BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5197.p         (298 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002538453.1| conserved hypothetical protein [Ricinus comm...    97   3e-18
ref|YP_004750718.1| hypothetical protein CFU_0056 [Collimonas fu...    80   4e-13

>ref|XP_002538453.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF23930.1| conserved hypothetical protein [Ricinus communis]
          Length = 245

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 104/223 (46%), Positives = 130/223 (58%), Gaps = 10/223 (4%)

Query: 1   MPASDTSSADEVRILNSISDGKTGTRSSTGSKAGKPRRLLVIVLVLLLVAGLATLAALRM 60
           +  SDT  ADEVRILNSISD K+  R+S  +  GK  R+  + ++LLL+ G      L  
Sbjct: 15  LSGSDTPGADEVRILNSISDTKSSGRASAPAARGKGGRIAAVAVLLLLLIGAGA-LVLNG 73

Query: 61  NRPDSAPVQATGANAPVPPVASV--TSASTPAAEAITTPAAPAAQESSGVGDTAVINDTG 118
                APV A     PV P+A+      S PAA + +TP A +A       DTAVINDTG
Sbjct: 74  RSESGAPVAAAPEAKPVAPLAAAEPNPNSVPAAPSASTPPAASA-------DTAVINDTG 126

Query: 119 SHATDDAASTASRGPDQLTSALEEGVKPPPATLKNALEAKPEKPAKPAAQHEDKKKKPAK 178
             +             QLT+ALEEGVKPPP+TLKNALEAKPEKP KPA Q   ++K+   
Sbjct: 127 PGSAQPEPPAPPSSQAQLTNALEEGVKPPPSTLKNALEAKPEKPEKPAKQAAREEKRKKA 186

Query: 179 AENRNDSDVDLIKALVARSGEVEKKRNANGSNNGGTAANAGNG 221
           AE +NDSDVDLIKALVAR+ E ++K  A  S  G ++     G
Sbjct: 187 AEAKNDSDVDLIKALVARTPEADRKSQARDSAAGASSRKLAQG 229


>ref|YP_004750718.1| hypothetical protein CFU_0056 [Collimonas fungivorans Ter331]
 gb|AEK59895.1| conserved hypothetical protein [Collimonas fungivorans Ter331]
          Length = 303

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 78/234 (33%), Positives = 103/234 (44%), Gaps = 34/234 (14%)

Query: 78  PPVASVTSASTPAAEAITTPAA----PAAQESSGVGDTAVINDTGSHATDDAASTASRGP 133
           P  A   SA  P     +TPA     PA  E +      + ND  +HA + +A   ++  
Sbjct: 84  PETAIAASAPAPKELPPSTPALAANDPAPAEKTESQAAVIENDPAAHADEASADPRAK-- 141

Query: 134 DQLTSALEEGVKPPPATLKNALEAKPEKPAKPAAQH----------EDKK----KKPAKA 179
             LT  LE GV      LK ALE       KPA +           ++KK    K P   
Sbjct: 142 --LTETLEAGVPVTSTALKKALEEPKASKPKPAPKSVNAPLVNRNVQEKKAVAPKPPKAG 199

Query: 180 ENRNDSDVDLIKALVARSGEVEKKRNANGSNNGGTAANAGNGTNVDGSPQKSAQAHANNT 239
               DSDV+++ ALV+    V +++         +   A          Q ++       
Sbjct: 200 VQPADSDVNILSALVSHGDSVTEQQPPKAKETAKSKQQAKKKAAEPALAQNASDGP---- 255

Query: 240 KSKEARNVDVVERKNGESTAALLQRCHALGFVEGEFCRWRICSGRWDSDPACKV 293
                   D+VERK G+ST  LLQRC  LG +EGE CRWRICSGRWD+D ACKV
Sbjct: 256 --------DIVERKAGDSTGGLLQRCKQLGMIEGELCRWRICSGRWDTDAACKV 301