BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5191.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspiril... 418 e-115 ref|YP_202150.1| hypothetical protein XOO3511 [Xanthomonas oryza... 157 2e-36 ref|YP_452342.1| hypothetical protein XOO_3313 [Xanthomonas oryz... 156 4e-36 ref|ZP_05134708.1| conserved hypothetical protein [Stenotrophomo... 140 4e-31 ref|YP_003774193.1| hypothetical protein Hsero_0766 [Herbaspiril... 117 2e-24 >ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspirillum seropedicae SmR1] gb|ADJ62283.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 216/306 (70%), Positives = 246/306 (80%) Query: 1 MSDVHDDPLALLHWAQACRERGHHAFLLLDTAQAEASHLKLQSMHVPYASLFEGKREEAL 60 MS DPL L WA C +RGH A+LLLD+AQAE SHLKLQ+M +PYASLF+GKREEAL Sbjct: 1 MSADQGDPLGLQAWALECADRGHGAYLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEAL 60 Query: 61 PEIVPLLLPLSGLDEQRALVLVRWVSQLGFAAPCLSWYESTLGLHDFAAHLRNFHHAGLS 120 PEI PLL+ LSGLD R L W+SQL F+APCLSWYES L L FAAHLRNFH GLS Sbjct: 61 PEIAPLLISLSGLDAPRRERLASWISQLAFSAPCLSWYESPLPLQAFAAHLRNFHQVGLS 120 Query: 121 DGQAMMMRWYDTRILPIWMQALTKDQLALFTGGMLSLAFVDRFGEARTLYQSEQVQPPSQ 180 DGQAMMMRWYDTRILPIW QALT +Q +LFTGGM S+A+VDRFGEA+T++Q+ + PPS Sbjct: 121 DGQAMMMRWYDTRILPIWAQALTPEQRSLFTGGMFSIAYVDRFGEAKTIHQASEAGPPSA 180 Query: 181 ALPLDAPLVTLDDRQFGLLVDAGDLDALLTHLRFVIPDETNALPPRTLVEFVAAYQQRAR 240 PLD PLVTLDD+QFGLLVDAGDLD L+ HL+FVIPDET L PRTL++FVA YQQ A Sbjct: 181 PPPLDQPLVTLDDQQFGLLVDAGDLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAV 240 Query: 241 EAGVDDIDRQTQYVLLALYTSGAGVEHPAVKALMQNPPDSLAGYFDALQAMPEEVWEAGP 300 AG+DDIDRQ QYVLLALYTSG G HP ++ALM +PP SL Y++A+QAMPEEVWEAG Sbjct: 241 AAGLDDIDRQAQYVLLALYTSGRGTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGA 300 Query: 301 PLWENE 306 PLWE E Sbjct: 301 PLWEQE 306 >ref|YP_202150.1| hypothetical protein XOO3511 [Xanthomonas oryzae pv. oryzae KACC10331] gb|AAW76765.1| hypothetical protein XOO3511 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 317 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 105/288 (36%), Positives = 149/288 (51%), Gaps = 10/288 (3%) Query: 26 FLLLDTAQAEASHLKLQSMHVPYASLFEGKREEALPEIVPLLLPLSGLDEQRALVLVRWV 85 + ++D+AQ H +L + Y SLF+ + EE+L EI PLL+ D L L + Sbjct: 23 YAVIDSAQRPHFHERLDRLGATYCSLFDQQAEESLTEIAPLLVACDRADPTSRLALE--L 80 Query: 86 SQLGFAAPCLSWYESTLGLHDFAAHLRNFHHAGLSDGQA---MMMRWYDTRILPIWMQAL 142 +LG A P +S+ S + + D A H FH + Q M++RWYDTRILP+W+Q L Sbjct: 81 ERLGAAKPAVSYIGSAMPMQDLACHFGTFHLVKVPVEQGERDMLLRWYDTRILPVWLQLL 140 Query: 143 TKDQLALFTGGMLSLAFVDRFGEARTLYQSEQVQPPSQALPLDAPLVTLDDRQFGLLVDA 202 T +Q A+FT + + DRFG+ Q + P A P + LDD Q+ +DA Sbjct: 141 TAEQKAVFTAAIEEWHYFDRFGD----LQPLPLPGPLAAGLAALPPLRLDDAQYAEFLDA 196 Query: 203 GDLDALLTHLRFVIPDETNALPPRTLVEFVAAYQQRAREAGVDDIDRQTQYVLLALYTSG 262 + D + LR +IPDE + R L FV ++AR G+ ID Y+LLALYT+G Sbjct: 197 CEPDVAIAQLRRIIPDEMRRVEHRVLYPFVQQQMEQARAHGLGSIDDHVHYLLLALYTNG 256 Query: 263 AGVEHPAVKALMQNPPDSLAGYFDALQA-MPEEVWEAGPPLWENEHVA 309 HP V + P F A A +P +VWE G PLWE+ +A Sbjct: 257 RFRSHPYVADRLAAPASMHEQAFAAWAATVPADVWELGRPLWESAPIA 304 >ref|YP_452342.1| hypothetical protein XOO_3313 [Xanthomonas oryzae pv. oryzae MAFF 311018] dbj|BAE70068.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 298 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 105/288 (36%), Positives = 149/288 (51%), Gaps = 10/288 (3%) Query: 26 FLLLDTAQAEASHLKLQSMHVPYASLFEGKREEALPEIVPLLLPLSGLDEQRALVLVRWV 85 + ++D+AQ H +L + Y SLF+ + EE+L EI PLL+ D L L + Sbjct: 4 YAVIDSAQRPHFHERLDRLGATYCSLFDQQAEESLTEIAPLLVACDRADPTSRLALE--L 61 Query: 86 SQLGFAAPCLSWYESTLGLHDFAAHLRNFHHAGLSDGQA---MMMRWYDTRILPIWMQAL 142 +LG A P +S+ S + + D A H FH + Q M++RWYDTRILP+W+Q L Sbjct: 62 ERLGAAKPAVSYIGSAMPMQDLACHFGTFHLVKVPVEQGERDMLLRWYDTRILPVWLQLL 121 Query: 143 TKDQLALFTGGMLSLAFVDRFGEARTLYQSEQVQPPSQALPLDAPLVTLDDRQFGLLVDA 202 T +Q A+FT + + DRFG+ Q + P A P + LDD Q+ +DA Sbjct: 122 TAEQKAVFTAAIEEWHYFDRFGD----LQPLPLPGPLAAGLAALPPLRLDDAQYAEFLDA 177 Query: 203 GDLDALLTHLRFVIPDETNALPPRTLVEFVAAYQQRAREAGVDDIDRQTQYVLLALYTSG 262 + D + LR +IPDE + R L FV ++AR G+ ID Y+LLALYT+G Sbjct: 178 CEPDVAIAQLRRIIPDEMRRVEHRVLYPFVQQQMEQARAHGLGSIDDHVHYLLLALYTNG 237 Query: 263 AGVEHPAVKALMQNPPDSLAGYFDALQA-MPEEVWEAGPPLWENEHVA 309 HP V + P F A A +P +VWE G PLWE+ +A Sbjct: 238 RFRSHPYVADRLAAPASMHEQAFAAWAATVPADVWELGRPLWESAPIA 285 >ref|ZP_05134708.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gb|EED38769.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 288 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 148/280 (52%), Gaps = 9/280 (3%) Query: 28 LLDTAQAEASHLKLQSMHVPYASLFEGKREEALPEIVPLLLPLSGLDEQRALVLVRWVSQ 87 ++D+AQ H +L+ + Y SLFEG E +L +I PLL+ D L + Q Sbjct: 1 MIDSAQRPHFHERLERLGAHYRSLFEGTAEASLLDIAPLLVAWP--DTAVHARLDAEIRQ 58 Query: 88 LGFAAPCLSWYESTLGLHDFAAHLRNFHHAGLSD--GQAMMMRWYDTRILPIWMQALTKD 145 +G P ++ S L L + A LR FH + + G+ M++RWYDTRILP ++ L Sbjct: 59 MGTQRPGVTLLWSALELDELAKRLRTFHLVKVPEKGGREMLLRWYDTRILPALLELLLPA 118 Query: 146 QLALFTGGMLSLAFVDRFGEARTLYQSEQVQPPSQALPLDAPLVTLDDRQFGLLVDAGDL 205 Q A G+ L + DR+G+ + +E ALP PL LD +Q+ L+DA + Sbjct: 119 QRAALLEGVQRLQYFDRYGDLQEWPLAEVDDAGLPALP---PL-RLDPQQYTRLLDACEP 174 Query: 206 DALLTHLRFVIPDETNALPPRTLVEFVAAYQQRAREAGVDDIDRQTQYVLLALYTSGAGV 265 D + LR VIPDE +P R+L FV + Q GVD +D QY+LLALYTSGA Sbjct: 175 DVAIAQLRRVIPDEMKRVPYRSLYPFVVKHMQDTIAHGVDQVDDHVQYLLLALYTSGACR 234 Query: 266 EHPAVKALMQNPPDSLAGYF-DALQAMPEEVWEAGPPLWE 304 +H AV+A + F D A+P+++W G PLWE Sbjct: 235 DHSAVRARFSQEASAFEAPFPDWASALPDDIWLMGVPLWE 274 >ref|YP_003774193.1| hypothetical protein Hsero_0766 [Herbaspirillum seropedicae SmR1] gb|ADJ62285.1| hypothetical protein Hsero_0766 [Herbaspirillum seropedicae SmR1] Length = 164 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 58/106 (54%), Positives = 76/106 (71%) Query: 204 DLDALLTHLRFVIPDETNALPPRTLVEFVAAYQQRAREAGVDDIDRQTQYVLLALYTSGA 263 DL AL+ HL+FVIPDET + P+ L FVA YQ+RA AG+ DIDRQT YVL+ALYTSG Sbjct: 56 DLKALVDHLKFVIPDETALVDPQQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGK 115 Query: 264 GVEHPAVKALMQNPPDSLAGYFDALQAMPEEVWEAGPPLWENEHVA 309 GVE P K +M++PP S + DA+ +P+ V+++G PLW+N A Sbjct: 116 GVERPEFKKVMEHPPASADEFSDAMIGLPQSVYDSGTPLWDNSAYA 161