BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5190.p         (168 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774193.1| hypothetical protein Hsero_0766 [Herbaspiril...   209   1e-52
ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspiril...   120   8e-26
ref|YP_452342.1| hypothetical protein XOO_3313 [Xanthomonas oryz...    65   2e-09
ref|YP_202150.1| hypothetical protein XOO3511 [Xanthomonas oryza...    65   3e-09
ref|ZP_05134708.1| conserved hypothetical protein [Stenotrophomo...    56   2e-06

>ref|YP_003774193.1| hypothetical protein Hsero_0766 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62285.1| hypothetical protein Hsero_0766 [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/151 (67%), Positives = 120/151 (79%)

Query: 18  GRMSMLHERWQKKIFFPQWALVLGMVFLLAMSCPRAHAQTNDDLKALVAHLKFVIPDETA 77
           GR  M HE W ++    Q  L +G+  LL +S   A AQTN DLKALV HLKFVIPDETA
Sbjct: 14  GRTRMSHEHWMRRTALLQAVLAMGLALLLCLSTFSARAQTNPDLKALVDHLKFVIPDETA 73

Query: 78  LVEPKKLERFVAQYQKRAVSAGLKDIDRQTAYVLLALYTSGKGLEQPEFKQVMAHPPASS 137
           LV+P++LERFVAQYQKRA +AGL+DIDRQTAYVL+ALYTSGKG+E+PEFK+VM HPPAS+
Sbjct: 74  LVDPQQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASA 133

Query: 138 DAFSDALIGLPQRVYDSGQPLWENAVNGGSR 168
           D FSDA+IGLPQ VYDSG PLW+N+     R
Sbjct: 134 DEFSDAMIGLPQSVYDSGTPLWDNSAYAKGR 164


>ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62283.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 59/101 (58%), Positives = 75/101 (74%)

Query: 60  DLKALVAHLKFVIPDETALVEPKKLERFVAQYQKRAVSAGLKDIDRQTAYVLLALYTSGK 119
           DL  LV HLKFVIPDET  + P+ L  FVA+YQ+ AV+AGL DIDRQ  YVLLALYTSG+
Sbjct: 204 DLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLALYTSGR 263

Query: 120 GLEQPEFKQVMAHPPASSDAFSDALIGLPQRVYDSGQPLWE 160
           G   P  + +MA PPAS DA+ +A+  +P+ V+++G PLWE
Sbjct: 264 GTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGAPLWE 304


>ref|YP_452342.1| hypothetical protein XOO_3313 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 dbj|BAE70068.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 298

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 65  VAHLKFVIPDETALVEPKKLERFVAQYQKRAVSAGLKDIDRQTAYVLLALYTSGKGLEQP 124
           +A L+ +IPDE   VE + L  FV Q  ++A + GL  ID    Y+LLALYT+G+    P
Sbjct: 184 IAQLRRIIPDEMRRVEHRVLYPFVQQQMEQARAHGLGSIDDHVHYLLLALYTNGRFRSHP 243

Query: 125 EFKQVMAHPPASSD-AFSDALIGLPQRVYDSGQPLWENA 162
                +A P +  + AF+     +P  V++ G+PLWE+A
Sbjct: 244 YVADRLAAPASMHEQAFAAWAATVPADVWELGRPLWESA 282


>ref|YP_202150.1| hypothetical protein XOO3511 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gb|AAW76765.1| hypothetical protein XOO3511 [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 317

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 65  VAHLKFVIPDETALVEPKKLERFVAQYQKRAVSAGLKDIDRQTAYVLLALYTSGKGLEQP 124
           +A L+ +IPDE   VE + L  FV Q  ++A + GL  ID    Y+LLALYT+G+    P
Sbjct: 203 IAQLRRIIPDEMRRVEHRVLYPFVQQQMEQARAHGLGSIDDHVHYLLLALYTNGRFRSHP 262

Query: 125 EFKQVMAHPPASSD-AFSDALIGLPQRVYDSGQPLWENA 162
                +A P +  + AF+     +P  V++ G+PLWE+A
Sbjct: 263 YVADRLAAPASMHEQAFAAWAATVPADVWELGRPLWESA 301


>ref|ZP_05134708.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
 gb|EED38769.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
          Length = 288

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 65  VAHLKFVIPDETALVEPKKLERFVAQYQKRAVSAGLKDIDRQTAYVLLALYTSGKGLEQP 124
           +A L+ VIPDE   V  + L  FV ++ +  ++ G+  +D    Y+LLALYTSG   +  
Sbjct: 178 IAQLRRVIPDEMKRVPYRSLYPFVVKHMQDTIAHGVDQVDDHVQYLLLALYTSGACRDHS 237

Query: 125 EFKQVMAHPPASSDA-FSDALIGLPQRVYDSGQPLWE 160
             +   +   ++ +A F D    LP  ++  G PLWE
Sbjct: 238 AVRARFSQEASAFEAPFPDWASALPDDIWLMGVPLWE 274