BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5188.p (721 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774195.1| hypothetical protein Hsero_0768 [Herbaspiril... 1145 0.0 ref|YP_202147.1| hypothetical protein XOO3508 [Xanthomonas oryza... 402 e-110 ref|ZP_05133435.1| conserved hypothetical protein [Stenotrophomo... 358 1e-96 ref|YP_452337.1| hypothetical protein XOO_3308 [Xanthomonas oryz... 275 2e-71 ref|YP_004157985.1| hypothetical protein Varpa_5721 [Variovorax ... 253 7e-65 >ref|YP_003774195.1| hypothetical protein Hsero_0768 [Herbaspirillum seropedicae SmR1] gb|ADJ62287.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 720 Score = 1145 bits (2961), Expect = 0.0, Method: Composition-based stats. Identities = 558/717 (77%), Positives = 626/717 (87%), Gaps = 1/717 (0%) Query: 1 MSMLYTGRAVPSDGRRKFSAREASQRAKALACLRSRGSTECKGQVFVGMFFDGTGNNDKW 60 MSMLYTGR VP DG RKFSA+EA QRAKA+ CLR+RG TECKGQ+F G+FFDGTGNNDKW Sbjct: 1 MSMLYTGRPVPIDGHRKFSAKEALQRAKAMRCLRARGQTECKGQLFTGLFFDGTGNNDKW 60 Query: 61 VEEKQTATQRQRNKHSNVARLYDAYLDEPKNGFFKSYMQGVGTPFAEIGDNSKLGTDIGG 120 VE+ QT QRQRNKHSNVARL+DAY+D+P NGFF+ YMQGVGTPFAEIGD KLGTDIGG Sbjct: 61 VEDGQTKNQRQRNKHSNVARLFDAYIDDPDNGFFRVYMQGVGTPFAEIGDTFKLGTDIGG 120 Query: 121 NAFGFMGADRINWGITFLLDAVYTYLTGTGLFGDLVQRRQLVNFMSSSMLAGGNAYAATA 180 + FG+MGADRINWGIT LL+AVY+Y TG LF ++R LVN MS ML GN A Sbjct: 121 SGFGYMGADRINWGITSLLNAVYSYATGGSLFSG-NEQRDLVNLMSMQMLQNGNVNAMPP 179 Query: 181 DMKVGQWNVPGYLLNAPEQMRRADIYKQFIDKLTAAVKSSQRKIVQINVSVFGFSRGAAE 240 D ++G+W VPGYL APE++RR +YK F+ KL AVKSSQRK+VQINVSVFGFSRGAAE Sbjct: 180 DWQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQRKVVQINVSVFGFSRGAAE 239 Query: 241 ARAFTHWLHELFTPSGGAFEIAGVPIRIGFLGIFDTVASVGIGDVTPITFGHMAWAHNTQ 300 ARA HWLHELFTPSGGAFE+AG+PIRIGFLG+FDTVA+VGIGDVTP+TFGHMAWA TQ Sbjct: 240 ARACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDTVAAVGIGDVTPVTFGHMAWADKTQ 299 Query: 301 SILPAVEECAHFVALHEQRASFPLESSTGWKNVGYPGMHSDVGGGYLPGEQGKSMPDWGL 360 S+ PAVE+CAHFVALHEQRASFPLESSTGW NVGYPGMHSD+GGGY PGEQGKSMP WG Sbjct: 300 SVPPAVEQCAHFVALHEQRASFPLESSTGWTNVGYPGMHSDIGGGYFPGEQGKSMPSWGK 359 Query: 361 SPQLSQIPLIDMHFAALKGGVPLLTLAELAKDSASAKGFATDARLVKAYNDWLAGNGIKA 420 SP LSQIPLIDMHF ALK GVPL T E+ D + + +ATD RL+K+YNDWLA NGIKA Sbjct: 360 SPHLSQIPLIDMHFTALKAGVPLWTTGEINADPSLSASYATDPRLIKSYNDWLATNGIKA 419 Query: 421 GSIREFTQAHTRQYLRWRGSLHEGKGGLLLSKRFYRDAGTSDKKDLLEADVELGKMIRDW 480 GSIRE+T+AHTRQYLRWRGSLHEGKGGL+L KRFY+DAGTSDKKD+LEADVELGKMIRDW Sbjct: 420 GSIREYTEAHTRQYLRWRGSLHEGKGGLMLGKRFYQDAGTSDKKDMLEADVELGKMIRDW 479 Query: 481 RERGNLDLDQRMGQMARKYVRRVSPLAGVLTDAAKERLTAEEKKFYDIMCAGPVPPAASV 540 RER +L+LDQRMGQMA+KYVRRVSPL G+L +K+RLTA+EKKFYDIMC+ P+PPAA V Sbjct: 480 RERASLNLDQRMGQMAQKYVRRVSPLTGMLMGPSKDRLTAQEKKFYDIMCSDPMPPAACV 539 Query: 541 TLFDDYIHDSRAGFRVAGKHEPIFITGGYARFRQVFLQGEGDSATRKIGELVERKVGERA 600 TLF+DY+HDSRAGFRV GKHEPIF+TGGYARFR VFLQGEGDSATRKI ELVER VG+RA Sbjct: 540 TLFEDYVHDSRAGFRVMGKHEPIFLTGGYARFRHVFLQGEGDSATRKITELVERHVGDRA 599 Query: 601 ADMAEDARDIKDYTVRTYDRARDRIVSGYHAVEDAAVRAKREVEDKALAAKREIQEQAEA 660 ADMAEDARDIKDYTVRTYDRAR RIVSGYHAVEDAAVRAKREVE KALAAKREI+ QAEA Sbjct: 600 ADMAEDARDIKDYTVRTYDRARARIVSGYHAVEDAAVRAKREVEAKALAAKREIEAQAEA 659 Query: 661 ARKKLQAAAEAARDQASALKKKTMAEIKREADEAQRIYDAAQRHVMKKYEELGAMWH 717 AR+++QA A AA+ QA LK KT+AEIKREADEAQRIYDAAQ+ V++KY+++ A WH Sbjct: 660 ARRQVQATAAAAKRQAVVLKDKTVAEIKREADEAQRIYDAAQKQVIRKYQQMEAFWH 716 >ref|YP_202147.1| hypothetical protein XOO3508 [Xanthomonas oryzae pv. oryzae KACC10331] gb|AAW76762.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 610 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 257/594 (43%), Positives = 348/594 (58%), Gaps = 60/594 (10%) Query: 10 VPSDGRRKFSAREASQRAKALACLRSRGSTECKGQVFVGMFFDGTGNNDKW----VEEKQ 65 +P DG+R+ + EA +RA+A+ACLR + S+EC+GQV V +FFDGTGNN KW +E K+ Sbjct: 11 MPHDGQRRLTPSEAQRRAEAMACLRDK-SSECQGQVHVNLFFDGTGNNWKWEGTFIEGKK 69 Query: 66 TATQRQRNK--HSNVARLYDAYLDEPKNGFFKSYMQGVGTPFAEIGDNSKLGTDIGGNAF 123 +TQ QRN+ HSN+ARL+DA +EP +G F YM GVGTPF E+GD S G+ +GG A Sbjct: 70 RSTQTQRNRDGHSNIARLWDASFNEPDDGLFSVYMPGVGTPFPEVGDTSTEGSALGGAA- 128 Query: 124 GFMGADRINWGITFLLDAVYTYLTGTGLFGDLVQRRQLVNFMSSSMLAGGNAYAATADMK 183 GA RINW I + ++++ YL + + ++ +A + M Sbjct: 129 ALYGAHRINWAIIQVYNSIHRYL----------------DINHAPLIPDDSARLIVSQMS 172 Query: 184 VGQWNVPGYLLNAPEQMRRADIYKQFIDKLTAAVKSSQRKIVQINVSVFGFSRGAAEARA 243 L+ E RR + + KL VK+ QRKI +N++VFGFSRGAA ARA Sbjct: 173 ---------QLSLAEGFRRRTYLEIYGRKLEQLVKTHQRKIKSLNIAVFGFSRGAAAARA 223 Query: 244 FTHWLHELFTP--SGGAFEIAGVPIRIGFLGIFDTVASVGIGDVTPITFGHMAWAH-NTQ 300 F HWL+E+ P SG + +AGVP+++ FLGIFDTVASVG+ ++ ++ G MAWAH Sbjct: 224 FVHWLYEVVQPWGSGCGYNLAGVPMQLTFLGIFDTVASVGMAAMSRVSEGKMAWAHGEMM 283 Query: 301 SILPAVEECAHFVALHEQRASFPLESSTGWKNVGYPGMHSDVGGGYLPGEQGKSMPDWGL 360 SI P V++C HF ALHEQR +FP + + K YPGMHSDVGGGY PG QGK D Sbjct: 284 SIHPEVKQCVHFAALHEQRINFPADLAASGKEALYPGMHSDVGGGYSPGGQGKDCVDAQA 343 Query: 361 --SPQLSQIPLIDMHFAALKGGVPLLTLAELAKDSASAKGFATDARLVKAYNDWLAGNGI 418 + +LSQIPLIDMH A+K GVPL+T+ E+ + A AK FA +L+ AYN WLAG+ I Sbjct: 344 LGAAKLSQIPLIDMHHEAIKAGVPLMTMEEIRQRPALAKYFACHPQLIDAYNGWLAGHAI 403 Query: 419 KAGSIREFTQAHTRQYLRWRG-SLHEGKGGLLLSKRFYRDAGTSDKKDLLEADVELGKMI 477 G + + H RQY+RW+G L EG LL + FY A DK DL +A G+++ Sbjct: 404 AGGDHMQQIRQHCRQYVRWKGMRLWEGPDS-LLQQPFYVRADAEDKVDLAKAQHAFGQLV 462 Query: 478 RDW-RERGNLDLDQ----------RMGQMARKYVRRVSPLAGVLTDAAKERLTAEEKKFY 526 D R+ +D Q + Q +R+ R V P V D A A K+ Sbjct: 463 ADMSRQNDAVDGYQQAFADYKARDQAWQTSRQGPRPVPPRRIVSADLAD----AGTKELL 518 Query: 527 DIMCA-GPVPPAASVTLFDDYIHDSRAGFRVAGKHE---PIFITGGYARFRQVF 576 D++ + PVPP + LFD+Y+HDS AGF + E P+ T GY R+R VF Sbjct: 519 DVVLSKKPVPPVVA-NLFDNYVHDSLAGFYIKRWTELDIPVAATNGYLRYRSVF 571 >ref|ZP_05133435.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gb|EED37496.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 599 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 237/594 (39%), Positives = 327/594 (55%), Gaps = 59/594 (9%) Query: 10 VPSDGRRKFSAREASQRAKALACLRSRGSTECKGQVFVGMFFDGTGNNDKWV------EE 63 +P++G+R S EA QRA+A+ACLR +GS EC+GQV V ++FDGTGNN +W + Sbjct: 1 MPANGQRALSGAEAQQRARAMACLREKGS-ECQGQVHVSIYFDGTGNNREWEGTFVTGKT 59 Query: 64 KQTATQRQRNKHSNVARLYDAYLDEPKNGFFKSYMQGVGTPFAEIGDNSKLGTDIGGNAF 123 + TQ RN HSNVARLYDA L E +NGFF Y+ GVGTPFA++GD ++ G +GG A Sbjct: 60 RSPKTQLARNGHSNVARLYDAALKERENGFFSIYVPGVGTPFADVGDTNQDGDTLGGGAA 119 Query: 124 GFMGADRINWGITFLLDAVYTYLTGTGLFGDLVQRRQ---LVNFMSSSMLAGGNAYAATA 180 + GADRI+W I ++++V+ YL + DL+Q + LV MS + L G Sbjct: 120 RY-GADRIHWAILQIINSVHQYLNAS----DLIQPNEMKVLVASMSETRLLEG------- 167 Query: 181 DMKVGQWNVPGYLLNAPEQMRRADIYKQFIDKLTAAVKSSQRKIVQINVSVFGFSRGAAE 240 M R + +L V QR++ ++VSVFGFSRGAA+ Sbjct: 168 -------------------MARRSMLTAIAQRLERVVNGHQRRVKSVHVSVFGFSRGAAQ 208 Query: 241 ARAFTHWLHELFTP--SGGAFEIAGVPIRIGFLGIFDTVASVGIGDVTPITFGHMAWAH- 297 ARAF H L+E SG + IAG+P+ + F+GIFDTVASVG+ ++ ++ G WA Sbjct: 209 ARAFVHRLYETAEAWGSGCGYNIAGIPLYLNFMGIFDTVASVGVAAMSRVSKGKWDWAAG 268 Query: 298 NTQSILPAVEECAHFVALHEQRASFPLESSTGWKNVGYPGMHSDVGGGYLPGEQGKSMPD 357 + SI P +C HF ALHEQR +FPL+ +T + V YPGMHSDVGGGY PG QGK Sbjct: 269 DMMSIHPEARQCVHFAALHEQRINFPLDLATSGREVLYPGMHSDVGGGYSPGGQGKDFVS 328 Query: 358 WGL--SPQLSQIPLIDMHFAALKGGVPLLTLAELAKDSASAKGFATDARLVKAYNDWLAG 415 +LSQIPLIDMH A+K GV + T+ E+ A F +L++ YN WL G Sbjct: 329 GSADGKAKLSQIPLIDMHHEAVKAGVIVKTIDEIGTRPTLAMHFGCHPQLIRDYNAWLTG 388 Query: 416 NGIKAGSIREFTQAHTRQYLRWRGSLHEGKGGLLLSKRFYRDAGTSDKKDLLEADVE--- 472 +G+ G + H RQY+ W+G +L + F+ + D+ DL A + Sbjct: 389 HGVPGGGHAQQIAGHCRQYVAWKGKRLPNGPQSVLQQPFFTQSDAEDQVDLANAQRDFAN 448 Query: 473 -LGKMIRDWRE----RGNLDLDQRMGQMARKYVRRVSPLAGVLTDAAKER--LTAEEKKF 525 +GK+ R +E R LD Q+ + RK R V + AA + + AE Sbjct: 449 LVGKLSRGKQEMAAYRSQLDESQKRMEAGRKAGRPVFEPTPRASQAAYDYAGIPAETSTL 508 Query: 526 YDIMCAGPVPPAASVTLFDDYIHDSRAGFRVAGKHE---PIFITGGYARFRQVF 576 +++ G P S LFD+Y+HDS AGF + E P T GY R+R+VF Sbjct: 509 LNLVLDGAPVPDVSTNLFDNYMHDSLAGFYIGKWTELNIPAVSTYGYLRYREVF 562 >ref|YP_452337.1| hypothetical protein XOO_3308 [Xanthomonas oryzae pv. oryzae MAFF 311018] dbj|BAE70063.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 440 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 181/404 (44%), Positives = 239/404 (59%), Gaps = 27/404 (6%) Query: 194 LNAPEQMRRADIYKQFIDKLTAAVKSSQRKIVQINVSVFGFSRGAAEARAFTHWLHELFT 253 L+ E RR + + KL VK+ QRKI +N++VFGFSRGAA ARAF HWL+E+ Sbjct: 4 LSLAEGFRRRTYLEIYGRKLEQLVKTHQRKIKSLNIAVFGFSRGAAAARAFVHWLYEVVQ 63 Query: 254 P--SGGAFEIAGVPIRIGFLGIFDTVASVGIGDVTPITFGHMAWAH-NTQSILPAVEECA 310 P SG + +AGVP+++ FLGIFDTVASVG+ ++ ++ G MAWAH SI P V++C Sbjct: 64 PWGSGCGYNLAGVPMQLTFLGIFDTVASVGMAAMSRVSEGKMAWAHGEMMSIHPEVKQCV 123 Query: 311 HFVALHEQRASFPLESSTGWKNVGYPGMHSDVGGGYLPGEQGKSMPDWGL--SPQLSQIP 368 HF ALHEQR +FP + + K YPGMHSDVGGGY PG QGK D + +LSQIP Sbjct: 124 HFAALHEQRINFPADLAASGKEALYPGMHSDVGGGYSPGGQGKDCVDAQALGAAKLSQIP 183 Query: 369 LIDMHFAALKGGVPLLTLAELAKDSASAKGFATDARLVKAYNDWLAGNGIKAGSIREFTQ 428 LIDMH A+K GVPL+T+ E+ + A AK FA +L+ AYN WLAG+ I G + + Sbjct: 184 LIDMHHEAIKAGVPLMTMEEIRQRPALAKYFACHPQLIDAYNGWLAGHAIAGGDHMQQIR 243 Query: 429 AHTRQYLRWRG-SLHEGKGGLLLSKRFYRDAGTSDKKDLLEADVELGKMIRDW-RERGNL 486 H RQY+RW+G L EG LL + FY A DK DL +A G+++ D R+ + Sbjct: 244 QHCRQYVRWKGMRLWEGPDS-LLQQPFYVRADAEDKVDLAKAQHAFGQLVADMSRQNDAV 302 Query: 487 DLDQ----------RMGQMARKYVRRVSPLAGVLTDAAKERLTAEEKKFYDIMCA-GPVP 535 D Q + Q +R+ R V P V D A A K+ D++ + PVP Sbjct: 303 DGYQQAFADYKARDQAWQTSRQGPRPVPPRRIVSADLAD----AGTKELLDVVLSKKPVP 358 Query: 536 PAASVTLFDDYIHDSRAGFRVAGKHE---PIFITGGYARFRQVF 576 P + LFD+Y+HDS AGF + E P+ T GY R+R VF Sbjct: 359 PVVA-NLFDNYVHDSLAGFYIKRWTELDIPVAATNGYLRYRSVF 401 >ref|YP_004157985.1| hypothetical protein Varpa_5721 [Variovorax paradoxus EPS] gb|ADU39874.1| Protein of unknown function DUF2235 [Variovorax paradoxus EPS] Length = 651 Score = 253 bits (647), Expect = 7e-65, Method: Composition-based stats. Identities = 194/579 (33%), Positives = 280/579 (48%), Gaps = 64/579 (11%) Query: 1 MSMLYTGRAVPSDGRRKFSAREASQRAKALACLRSRGSTE-CKGQVFVGMFFDGTGNNDK 59 MS+ A+PS R FS E QR A AC+ + T C + VG+FFDGT NN K Sbjct: 1 MSVQSMPAALPS--ARPFSLIEQMQRIGASACVDYKDKTNMCSSMIHVGIFFDGTNNNKK 58 Query: 60 WVEEKQTATQRQRNKHSNVARLYDAYLDEPKNGFFKSYMQGVGTPFAEIGDNSKLGTDIG 119 +++ + HSNV L+D + D P G+++ Y+ GVGTPF E+G+ ++ Sbjct: 59 --RDQENVKDPNKRSHSNVVVLHDTFKDAPDEGYYRFYVPGVGTPFDEVGEKTETPD--- 113 Query: 120 GNAFGFMGADRINWGITFLLDAVYTYLT-GTGLFGDLVQRRQLVNFMSSSMLAGGNAYAA 178 G + G RINW + LL+A++ + G L D R + L GN Sbjct: 114 GKSMAAGGDARINWAMIQLLNAMHQGIVPGRLLIEDATAGRDATTAPLHASLTTGNRLEG 173 Query: 179 TADMKVGQWNVPGYLLNAPEQMRRADIYKQFIDKLTAAVKSSQRKIVQINVSVFGFSRGA 238 GY + + + + ++ + AA S RK++Q+NVSVFGFSRGA Sbjct: 174 KR----------GYFIGG--TLGKVNQLERLLGSKAAATPS--RKLLQVNVSVFGFSRGA 219 Query: 239 AEARAFTHWLHELFTPSG--GAFEIAGVPIRIGFLGIFDTVASVGIGDVTPITFGHMAWA 296 A+ARAF H++H + G G + +AGVP R FLG+FD+VASVG+ D +P G WA Sbjct: 220 AQARAFCHFVHHIMLKKGPAGGYTLAGVPFRFQFLGLFDSVASVGMADSSPFWRGLGGWA 279 Query: 297 HNTQSILPAVEECAHFVALHEQRASFPLESS-TGWKNVG-------YPGMHSDVGGGYLP 348 + T I+P+VE H A HE R +FPL + G K YPG HSDVGGGY P Sbjct: 280 NGTLDIVPSVERTVHLCAAHEIRINFPLSTGRIGEKQYPANCIEKVYPGAHSDVGGGYDP 339 Query: 349 GEQGKSMPDWGLSPQLSQIPLIDMHFAALKGGVPLLTLAEL---AKDSASAKGFATDARL 405 G QGK++ + LSQ+PL+DM+ A + VPLL + L K + +A+ D Sbjct: 340 GCQGKAIDS--RTKLLSQMPLLDMYREAQRSMVPLLNIDALKASGKTARTAEDLVIDPTC 397 Query: 406 VKAYNDWLA-GNGIKAGSIREFTQAHTRQYLRWRGSLHEGKGGLLLSKRFYRDAGTSDKK 464 K +N + GI G++ + H + Y RWR H+G+ L S Y A D+ Sbjct: 398 EKLFNAYRGFATGIN-GTVEDHLHGHVQLYWRWRLQ-HKGQMHKLPS---YAKAVRQDQI 452 Query: 465 DLLEADVELGKMIRDWRERGNLDLDQRMGQMARKYVRRVSPLAGVLTDAAKERLTAEEKK 524 D+ E+D + I E M Q+A + + +P RL ++ Sbjct: 453 DVWESDSDFSSDIAKALE---------MKQVADRQA-KANPHG-----PDTSRLDQAQRD 497 Query: 525 FYDIMCAGPVPPAASV-----TLFDDYIHDSRAGFRVAG 558 F + PP+ + FD +HDS A F + G Sbjct: 498 FLRVRKEYLHPPSTRMPKLVDDFFDQMLHDSHASFYMVG 536