BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5187.p (543 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herba... 662 0.0 ref|YP_002909638.1| methyl-accepting chemotaxis protein [Burkhol... 354 3e-95 ref|YP_001351851.1| methyl-accepting chemotaxis transducer trans... 353 4e-95 ref|YP_315378.1| methyl-accepting chemotaxis sensory transducer ... 346 6e-93 ref|YP_003778030.1| methyl-accepting chemotaxis transducer trans... 344 2e-92 >ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ65490.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 434/507 (85%), Positives = 471/507 (92%) Query: 37 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLGEG 96 MKIGTRLGGSF+LVTLL C LI AS LTLT+IG+HW DFSGTVL KQDYATQGYIKLG+G Sbjct: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWNDFSGTVLGKQDYATQGYIKLGDG 60 Query: 97 VQNFKNYVVRGKDYDKHFLADMDAIARLMSEYRKLGVGNPKEEELLQKISTGERNYRDAV 156 VQNFKNYVVRGKDYD+HFLADMDAI RLM +YRKLGV NPKEE LL+KIS GER YR+A+ Sbjct: 61 VQNFKNYVVRGKDYDRHFLADMDAIVRLMEQYRKLGVDNPKEEALLEKISNGERRYREAL 120 Query: 157 AKAQGMKAAGASVSEIDASISGADKVLGAGFAGLLAIARENANGTGQEISSAIRNGEAVE 216 AKAQ MKAAGAS SE+DA+ISGADKVLGAGF+GLLAIARENA TG++ISSAI G+++ Sbjct: 121 AKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARENAGSTGEQISSAIGAGKSLS 180 Query: 217 LGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGSRIEVRRKDETGELLQAL 276 L VGA+VV+LA +LA+LATRSIT+P+ EAV IAKTVAAGDLGSRI V RKDETGELLQAL Sbjct: 181 LAVGALVVILALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQAL 240 Query: 277 KEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTV 336 KEMN+SLQ+VVGGVR GSDTIVTASTQIAGGNLDLSARTE+QASSLE+TAAAME+ITSTV Sbjct: 241 KEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQASSLEQTAAAMEEITSTV 300 Query: 337 RRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAREIADIISVIDGIAFQTN 396 RRNADHARQANAMAGSVS VASRSGLVVSDVV TM+EIQASAREI +IISVIDGIAFQTN Sbjct: 301 RRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASAREIEEIISVIDGIAFQTN 360 Query: 397 ILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKDLIGNSVEKVEAGSQLVR 456 ILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKEIKDLIGNSVEK+ AGS+LV+ Sbjct: 361 ILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKEIKDLIGNSVEKIAAGSKLVQ 420 Query: 457 NAGATIEELVVSVRSVTQIMSEISAASGEQEAGIEQVNQAIAQMDTVTQQNAALVEEAAA 516 AGATIEELV SVR VTQIMSEISAASGEQE+GIEQVNQAIAQMDTVTQQNAALVEEAAA Sbjct: 421 AAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQAIAQMDTVTQQNAALVEEAAA 480 Query: 517 ATEALKEQARRLAESVSVFRLGVGRMA 543 ATEALK QARRLAESVSVFRLG G+MA Sbjct: 481 ATEALKAQARRLAESVSVFRLGGGQMA 507 >ref|YP_002909638.1| methyl-accepting chemotaxis protein [Burkholderia glumae BGR1] gb|ACR32403.1| Methyl-accepting chemotaxis protein [Burkholderia glumae BGR1] Length = 526 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 243/504 (48%), Positives = 332/504 (65%) Query: 37 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLGEG 96 + IG RL +F + L+ +L + L+ I + W + L K G+ Sbjct: 8 LSIGVRLAIAFFIAALMTALLGAVAYTRLSSISEQWRTYESVTLAKLQLLQHAKDVFGDA 67 Query: 97 VQNFKNYVVRGKDYDKHFLADMDAIARLMSEYRKLGVGNPKEEELLQKISTGERNYRDAV 156 V N+K+YV+RG DY FLA++DAI + +LG E + ++ ++ YR ++ Sbjct: 68 VHNYKDYVLRGGDYRTKFLANLDAIDQAAQTSLELGTFGSGESDAVRTLTAATAGYRASL 127 Query: 157 AKAQGMKAAGASVSEIDASISGADKVLGAGFAGLLAIARENANGTGQEISSAIRNGEAVE 216 K + +GAS+ D +SGADK +G L+AI RE + G+ ++ E+ Sbjct: 128 DKLDALVNSGASIEARDHVVSGADKPIGKALDVLIAIGRERTHEQGKNVTHLASVAESTI 187 Query: 217 LGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGSRIEVRRKDETGELLQAL 276 + V + A LLA TR IT PI AV+ A+ VA GDL I R DETG LL+AL Sbjct: 188 IAVTITALAAAVLLAFFITRDITLPIGVAVSAAEAVARGDLTQDITTDRADETGRLLRAL 247 Query: 277 KEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTV 336 ++MN +L +VVG VR+G+DT+ TA+++IA GN DLS+RTE+QASSL+ETA++ME++T+TV Sbjct: 248 RDMNENLLQVVGRVRSGADTMATATSEIAAGNHDLSSRTEEQASSLQETASSMEELTATV 307 Query: 337 RRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAREIADIISVIDGIAFQTN 396 R+NAD+A + + +A S + VA + VV VV TMEEI S++ I+DI V++GIAFQTN Sbjct: 308 RQNADNAHRGSTLATSAADVAHQGSAVVGKVVRTMEEISESSKRISDITGVVEGIAFQTN 367 Query: 397 ILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKDLIGNSVEKVEAGSQLVR 456 ILALNAAVEAARAG+QGRGFAVVA EVRNLAQRS +AAKEIK+LI SV KV+ G+ L Sbjct: 368 ILALNAAVEAARAGDQGRGFAVVAGEVRNLAQRSGSAAKEIKELIAASVRKVQDGTNLAS 427 Query: 457 NAGATIEELVVSVRSVTQIMSEISAASGEQEAGIEQVNQAIAQMDTVTQQNAALVEEAAA 516 AGAT+ E+ +V V+ IM EI+AAS EQ GIEQVN A++QMD VTQQNAALVE+AAA Sbjct: 428 EAGATMSEVTRAVARVSDIMGEIAAASTEQSRGIEQVNLAVSQMDQVTQQNAALVEQAAA 487 Query: 517 ATEALKEQARRLAESVSVFRLGVG 540 A+ +L+EQ R+L+E V+ FRL G Sbjct: 488 ASASLQEQGRQLSEVVAFFRLRSG 511 >ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR89391.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 259/510 (50%), Positives = 332/510 (65%), Gaps = 7/510 (1%) Query: 35 TGMKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLG 94 T +KI TRL F L+ L ++ +L L +G + T+L K+ A + + Sbjct: 4 TNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVD 63 Query: 95 -EGVQNFKNYVVRGKDYDKHFLADMDAIARLMSEYRK---LGVGNPKEEELLQKISTGER 150 G + + + F MD + +E +K + P+++ L +++ Sbjct: 64 VNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVARN 123 Query: 151 NYRDAVAKAQGMKAAGASVSE---IDASISGADKVLGAGFAGLLAIARENANGTGQEISS 207 YRD +KA G I+ + A +L ++ + G I S Sbjct: 124 AYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQS 183 Query: 208 AIRNGEAVELGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGSRIEVRRKD 267 A +G ++ +G+ A V L A SITRP+ AVT+A+TVA+GDL ++IEV D Sbjct: 184 AFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSND 243 Query: 268 ETGELLQALKEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAA 327 ETG+L+QALK+M SL + V VR+G++TI TAS QIA GNLDLS+RTE+QASSL ETAA Sbjct: 244 ETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETAA 303 Query: 328 AMEQITSTVRRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAREIADIISV 387 +M Q+TSTVR+NAD+ARQAN++A S S VA + G VVS+VV TM I SAR+I DIISV Sbjct: 304 SMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIISV 363 Query: 388 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKDLIGNSVEK 447 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIK LIG+SV K Sbjct: 364 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVGK 423 Query: 448 VEAGSQLVRNAGATIEELVVSVRSVTQIMSEISAASGEQEAGIEQVNQAIAQMDTVTQQN 507 VEAGS+LV AG+T+ E+V SV+ VT IM+EI AAS EQ +GI+QVNQAI QMD VTQQN Sbjct: 424 VEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQN 483 Query: 508 AALVEEAAAATEALKEQARRLAESVSVFRL 537 AALVEEAAAA E+L++QA LA VS F+L Sbjct: 484 AALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >ref|YP_315378.1| methyl-accepting chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] gb|AAZ97573.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] Length = 559 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 229/344 (66%), Positives = 275/344 (79%) Query: 195 RENANGTGQEISSAIRNGEAVELGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAA 254 ++ + T I +G + +G+ V +++ A TRSITRP+ +AV +A+TVAA Sbjct: 166 KQAIDATAGNIHRQYESGRMLLIGLSIVALMMGIGFAFWITRSITRPMNQAVKVAQTVAA 225 Query: 255 GDLGSRIEVRRKDETGELLQALKEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSAR 314 GDL SRIEV KDETG LLQALK+MN SL ++VG VR G+D I TAS++IA GNLDLS+R Sbjct: 226 GDLTSRIEVEGKDETGRLLQALKDMNDSLVKIVGQVRLGTDAIATASSEIATGNLDLSSR 285 Query: 315 TEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEI 374 TE+QASSLEETA++MEQ+TSTV++NADHARQAN MA S S VA + G VV+ VV TM I Sbjct: 286 TEEQASSLEETASSMEQLTSTVKQNADHARQANQMAVSASEVAVKGGAVVAQVVDTMGSI 345 Query: 375 QASAREIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 434 S+R+I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA Sbjct: 346 NESSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAA 405 Query: 435 KEIKDLIGNSVEKVEAGSQLVRNAGATIEELVVSVRSVTQIMSEISAASGEQEAGIEQVN 494 KEIK LIG+SVEK + GS+LV AGAT++E+V SV+ VT IM EI+AAS EQ AGIEQVN Sbjct: 406 KEIKTLIGDSVEKADIGSKLVGQAGATMDEIVASVKRVTDIMGEITAASQEQSAGIEQVN 465 Query: 495 QAIAQMDTVTQQNAALVEEAAAATEALKEQARRLAESVSVFRLG 538 QAIAQMD VTQQNAALVEEAAAA ++++QA LAE+VSVFRL Sbjct: 466 QAIAQMDEVTQQNAALVEEAAAAASSMQDQAANLAEAVSVFRLA 509 >ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66122.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 255/508 (50%), Positives = 340/508 (66%), Gaps = 7/508 (1%) Query: 37 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLGE- 95 +KIG RL F+ + +L V++ + L IG D + L K+ A Q + + E Sbjct: 4 LKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKEN 63 Query: 96 GVQNFKNYVVRGKDYDKHFLADMDAIARLMSEYRK---LGVGNPKEEELLQKISTGERNY 152 GV+ F + +F +DA + +S+ +K + + +E+ L ++ Y Sbjct: 64 GVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRAAY 123 Query: 153 RDAVAKAQGMKAAGASVSEIDASISGADKVLGAGFAGLLAIA---RENANGTGQEISSAI 209 R +K AG + + + K++ G+L A ++ + T I+ Sbjct: 124 RATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINRDY 183 Query: 210 RNGEAVELGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGSRIEVRRKDET 269 R+G ++ L +GA+ ++L A LA L TRSITRP+ +AVTIA+TVAAGDL SRI+ +DET Sbjct: 184 RSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDET 243 Query: 270 GELLQALKEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAM 329 G+LL ALK MN +L +VG VR G++TI TAS +IA GNLDLSARTE QA SLEETA+AM Sbjct: 244 GKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAM 303 Query: 330 EQITSTVRRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAREIADIISVID 389 EQ+TSTV++NAD+ARQAN +A S S VA++ G VV VV+TM I AS+++IADII VID Sbjct: 304 EQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVID 363 Query: 390 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKDLIGNSVEKVE 449 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI +SVEKV+ Sbjct: 364 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVD 423 Query: 450 AGSQLVRNAGATIEELVVSVRSVTQIMSEISAASGEQEAGIEQVNQAIAQMDTVTQQNAA 509 GS+LV AG T++E+V SV VT ++ EI+ AS EQ GIEQVN AI +D TQQNAA Sbjct: 424 DGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAA 483 Query: 510 LVEEAAAATEALKEQARRLAESVSVFRL 537 LVE+AAAA ++++QA L ++VSVFRL Sbjct: 484 LVEQAAAAARSMQDQAASLTDAVSVFRL 511