BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5184.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777396.1| MarR family transcription regulator protein ...   240   7e-62
ref|YP_002908322.1| MarR family transcriptional regulator [Burkh...   128   3e-28
ref|YP_001565550.1| MarR family transcriptional regulator [Delft...   126   9e-28
ref|YP_004487658.1| MarR family transcriptional regulator [Delft...   125   2e-27
emb|CBA32368.1| hypothetical protein Csp_D31790 [Curvibacter put...   124   6e-27

>ref|YP_003777396.1| MarR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65488.1| MarR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 161

 Score =  240 bits (612), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 154/161 (95%), Positives = 158/161 (98%)

Query: 1   MLPKKPADFDSDDDAAPSAPLDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFT 60
           MLPKKPADFDSDDDAA SAPLDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFT
Sbjct: 1   MLPKKPADFDSDDDAASSAPLDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFT 60

Query: 61  VLSLLKANPNINQKRLSKAINVSPPNLATLLDKLEQRGLVVRQRNPQDRRSQVLALTPAG 120
           VLSLLKANP+INQKRLSKAINVSPPNLATLLD+LEQRGLV+RQRNPQDRRSQVLALT AG
Sbjct: 61  VLSLLKANPDINQKRLSKAINVSPPNLATLLDRLEQRGLVLRQRNPQDRRSQVLALTTAG 120

Query: 121 MRMCTKAEQTAIELELKATEMLSDGERAQLIGLLQKMFLPQ 161
           +RMCTKAEQTAIELELKATEMLSD ERAQLIGLLQKMFLPQ
Sbjct: 121 LRMCTKAEQTAIELELKATEMLSDAERAQLIGLLQKMFLPQ 161


>ref|YP_002908322.1| MarR family transcriptional regulator [Burkholderia glumae BGR1]
 gb|ACR31087.1| Transcriptional regulator, MarR family [Burkholderia glumae BGR1]
          Length = 157

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/157 (49%), Positives = 102/157 (64%), Gaps = 2/157 (1%)

Query: 2   LPKKPADFDSDDDAAPSAPLDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFTV 61
           +  K    +S DD A    +DQ  LL L+GYN RRAY+ I   F+ +M K ELR  DF V
Sbjct: 1   MSTKSVSNNSADDLADR--VDQSELLDLLGYNIRRAYLVIQSTFDAQMEKLELRQADFAV 58

Query: 62  LSLLKANPNINQKRLSKAINVSPPNLATLLDKLEQRGLVVRQRNPQDRRSQVLALTPAGM 121
           LS L+ NP INQK L+ A+ ++PPNLATLLD+LE RGL+ RQR+  DRR Q ++LTP G 
Sbjct: 59  LSTLRHNPGINQKALADALAIAPPNLATLLDRLESRGLLTRQRSLDDRRIQHVSLTPQGT 118

Query: 122 RMCTKAEQTAIELELKATEMLSDGERAQLIGLLQKMF 158
           R+  +A ++A + +  A +MLS   R QL  LL K+F
Sbjct: 119 RLHGQALKSAQKADEVAVQMLSGAGREQLKSLLTKIF 155


>ref|YP_001565550.1| MarR family transcriptional regulator [Delftia acidovorans SPH-1]
 gb|ABX37165.1| transcriptional regulator, MarR family [Delftia acidovorans SPH-1]
          Length = 166

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 70/144 (48%), Positives = 99/144 (68%)

Query: 15  AAPSAPLDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFTVLSLLKANPNINQK 74
           AAP   +D   L +LVGYN RRA ++I+ +F +RMA  +L+ V+F+VLSL+  NP I  +
Sbjct: 22  AAPGPSIDASFLHTLVGYNARRASLSIIEVFVERMATHDLKMVEFSVLSLVSHNPGITSR 81

Query: 75  RLSKAINVSPPNLATLLDKLEQRGLVVRQRNPQDRRSQVLALTPAGMRMCTKAEQTAIEL 134
           +L  A++V PPNL  L+  LE+R L+ R+ +P DRR+  + LTPAG  +  +AE+TA EL
Sbjct: 82  QLCAALDVMPPNLVGLIAALERRKLIERRTHPTDRRAVGVHLTPAGAELTARAERTAAEL 141

Query: 135 ELKATEMLSDGERAQLIGLLQKMF 158
           EL AT  L+D ER  LI LLQK++
Sbjct: 142 ELDATYRLTDAERRTLIQLLQKIY 165


>ref|YP_004487658.1| MarR family transcriptional regulator [Delftia sp. Cs1-4]
 gb|AEF89303.1| transcriptional regulator, MarR family [Delftia sp. Cs1-4]
          Length = 166

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/144 (47%), Positives = 99/144 (68%)

Query: 15  AAPSAPLDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFTVLSLLKANPNINQK 74
           AAP   +D   L +LVGYN RRA ++I+ +F +RMA  +L+ V+F+VLSL+  NP I  +
Sbjct: 22  AAPGPSIDASFLHTLVGYNARRASLSIIEVFVERMATHDLKMVEFSVLSLVSHNPGITSR 81

Query: 75  RLSKAINVSPPNLATLLDKLEQRGLVVRQRNPQDRRSQVLALTPAGMRMCTKAEQTAIEL 134
           +L  A++V PPNL  L+  LE+R L+ R+ +P DRR+  + LTPAG  +  +AE+TA EL
Sbjct: 82  QLCAALDVMPPNLVGLIAALERRKLIERRTHPTDRRAVGVHLTPAGAELTARAERTAAEL 141

Query: 135 ELKATEMLSDGERAQLIGLLQKMF 158
           E+ AT  L+D ER  LI LLQK++
Sbjct: 142 EMDATYRLTDAERRTLIQLLQKIY 165


>emb|CBA32368.1| hypothetical protein Csp_D31790 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 142

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/140 (47%), Positives = 94/140 (67%)

Query: 21  LDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFTVLSLLKANPNINQKRLSKAI 80
           +D   L +LVGYN RRA + I+  F  RMA ++L+ VDF+VLSL+  NP I  ++L  A+
Sbjct: 1   MDTSYLRTLVGYNARRASLAIIESFMVRMAPYDLKVVDFSVLSLVAHNPGITSRQLCAAL 60

Query: 81  NVSPPNLATLLDKLEQRGLVVRQRNPQDRRSQVLALTPAGMRMCTKAEQTAIELELKATE 140
           NV PPNL  L+  LE+RGL+ R  +P D R+  + LTP G+ +  +AE+TA +LE+ AT 
Sbjct: 61  NVLPPNLVGLIATLERRGLIERLPHPSDGRAMGVHLTPQGLELMVQAEKTAFDLEMDATS 120

Query: 141 MLSDGERAQLIGLLQKMFLP 160
            L+D ER  LI LLQK++ P
Sbjct: 121 RLTDAERKTLIRLLQKVYTP 140