BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5183.p (591 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbaspirillum serop... 1073 0.0 ref|YP_521552.1| acyl-CoA dehydrogenase-like protein [Rhodoferax... 593 e-167 ref|YP_002798618.1| acyl-CoA dehydrogenase [Azotobacter vineland... 592 e-167 ref|YP_004157340.1| acyL-CoA dehydrogenase domain-containing pro... 587 e-165 ref|YP_002946283.1| acyl-CoA dehydrogenase domain-containing pro... 568 e-160 >ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65487.1| acyl-CoA dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 591 Score = 1073 bits (2774), Expect = 0.0, Method: Composition-based stats. Identities = 547/590 (92%), Positives = 565/590 (95%) Query: 1 MTMHYTPPLRDFAFVLNEVLQAPQVLRALPAHAEIDGELMMQVLEEAGRFAADVVAPLNG 60 MTMHY PPLRDFAFVL+EVLQAPQVLRALPAHAEIDG+LMMQVLEEAGRFAADVVAPLNG Sbjct: 1 MTMHYAPPLRDFAFVLDEVLQAPQVLRALPAHAEIDGDLMMQVLEEAGRFAADVVAPLNG 60 Query: 61 IGDREGCRLENGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSA 120 IGDREGCR +NGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSA Sbjct: 61 IGDREGCRFKNGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSA 120 Query: 121 ANHGWTMYPGLLHGAYACLAAHGSPELQARYLEKIASGQWLATMCLTEAQAGSDLGQLRT 180 ANHGWTMYPGLLHGAYACLAAHGS LQARYL+KIASG+WLATMCLTEAQAGSDLGQLRT Sbjct: 121 ANHGWTMYPGLLHGAYACLAAHGSAALQARYLDKIASGEWLATMCLTEAQAGSDLGQLRT 180 Query: 181 RAVPQEDGSYRLTGDKIFISGGEHDLTPNIIHLVLARLPDALPGSKGLSLFLAPRVLDDG 240 RAVPQ+DGSYRL+GDKIFISGGEHDLTPNI+HLVLARLPDA GSKGLSLFLAPRVLDDG Sbjct: 181 RAVPQDDGSYRLSGDKIFISGGEHDLTPNIVHLVLARLPDAPAGSKGLSLFLAPRVLDDG 240 Query: 241 SRNGVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQGL 300 SRNGVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQGL Sbjct: 241 SRNGVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQGL 300 Query: 301 GLAEAAWQRASAYARERRQSRAPGSSGNDLIVRHPAVQKLLMEQRCRIEGARLLTCWAGL 360 GLAEAA+QRASAYARERRQSRAPGSSGNDLIV HPAVQKLLMEQRCRIEGARLLTCWAGL Sbjct: 301 GLAEAAYQRASAYARERRQSRAPGSSGNDLIVHHPAVQKLLMEQRCRIEGARLLTCWAGL 360 Query: 361 LLDLAEHDTDAAMRRVHHERLEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVETGIEQ 420 LLDLAEHD +AA+R HHERLEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVETGIEQ Sbjct: 361 LLDLAEHDPEAALRSRHHERLEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVETGIEQ 420 Query: 421 FMRDARITMIYEGTNEIQAIDFLMRKVLGDEGKRLDDFLTLVRADIEDGTLLGEQARLLA 480 FMRDARITMIYEGTNEIQAIDFLMRKVLGDEG+RLDDFL LVRADI + + LGEQARLL Sbjct: 421 FMRDARITMIYEGTNEIQAIDFLMRKVLGDEGRRLDDFLGLVRADIAEASGLGEQARLLG 480 Query: 481 NAVDKLSGLATRIASAAVQSPSLPYYVADEMLRLTGHVALGWMWLRAGRRALSAMASDPA 540 AVDKL A+RIA+AA Q+P+LPYYVADEMLRL GHVALGWMWLRAGRRALSAMA DP Sbjct: 481 EAVDKLRIFASRIAAAAAQAPALPYYVADEMLRLCGHVALGWMWLRAGRRALSAMAQDPL 540 Query: 541 WYGGKRDAACYHFAFVFAEVHQLSSVIEGCLATGLPPLPTDLDHHAAQEA 590 WYGGKRDAACYHFAFVFAEV QLSSVIE CLATGLPPLPTDLDHHAAQEA Sbjct: 541 WYGGKRDAACYHFAFVFAEVQQLSSVIEACLATGLPPLPTDLDHHAAQEA 590 >ref|YP_521552.1| acyl-CoA dehydrogenase-like protein [Rhodoferax ferrireducens T118] gb|ABD68021.1| acyl-CoA dehydrogenase-like [Rhodoferax ferrireducens T118] Length = 569 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 311/528 (58%), Positives = 375/528 (71%), Gaps = 11/528 (2%) Query: 3 MHYTPPLRDFAFVLNEVLQAPQVLRALPAHAEIDGELMMQVLEEAGRFAADVVAPLNGIG 62 M Y PPL+D F+L+EVL AP L++LP AE+D +LM QVL+EAG+F +V+APLN G Sbjct: 1 MRYEPPLQDIQFILHEVLNAPACLQSLPTFAEVDADLMHQVLDEAGKFVGEVIAPLNRSG 60 Query: 63 DREGCRLENGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 D GC+ NG VTTPPGF+ AY F GWPALACA E GGQGLP +L+ LYEMLSAAN Sbjct: 61 DEVGCQFANGQVTTPPGFKAAYQAFWQAGWPALACAVEDGGQGLPGLLEAVLYEMLSAAN 120 Query: 123 HGWTMYPGLLHGAYACLAAHGSPELQARYLEKIASGQWLATMCLTEAQAGSDLGQLRTRA 182 HGWTM PGLLHGAY C+ H S EL+ RYL KIA+G+WLATMCLTE QAGSDLG +RT+A Sbjct: 121 HGWTMAPGLLHGAYECVKHHASDELKTRYLGKIATGEWLATMCLTEPQAGSDLGLVRTKA 180 Query: 183 VPQEDGSYRLTGDKIFISGGEHDLTPNIIHLVLARLPDALPGSKGLSLFLAPRVLDDGSR 242 PQ DGS RL+G KIFISGGEHDLT NI+HLVLARLPDA PG KGLSLFL+P+ + DG+R Sbjct: 181 QPQADGSCRLSGTKIFISGGEHDLTDNIVHLVLARLPDAPPGPKGLSLFLSPKFMPDGAR 240 Query: 243 NGVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQGLGL 302 N VHC IE KMG+HGSATC + F++A W+VGE GRGL AMFVMMNAARLHVG QG+GL Sbjct: 241 NPVHCERIEEKMGLHGSATCVMRFDEATGWIVGEPGRGLNAMFVMMNAARLHVGLQGIGL 300 Query: 303 AEAAWQRASAYARERRQSRAP--GSSG--NDLIVRHPAVQKLLMEQRCRIEGARLLTCWA 358 +AAWQ+A AYA+ERRQ RAP G+S DLIV HPA++++L QR I+G R+L Sbjct: 301 LDAAWQKADAYAKERRQMRAPVRGTSAAEADLIVEHPAMRRILDTQRAWIDGGRVLAYKT 360 Query: 359 GLLLDLAEHDTDAAMRRVHHER-LEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVETG 417 L LD+ +H ++ R+ ER +TPV+KA T Q F AS LQVFGGHGYV E G Sbjct: 361 ALELDVIKHHPNSK-RKAEAERWCSLVTPVLKAAWTAQAFNGASDCLQVFGGHGYVREWG 419 Query: 418 IEQFMRDARITMIYEGTNEIQAIDFLMRKVLGDEGKRLDDFLTLVRADIEDGTLLGEQA- 476 IEQ +RD+R+ MIYEGTNEIQAID L+RKVL D G LT + + D + E A Sbjct: 420 IEQIVRDSRVAMIYEGTNEIQAIDLLVRKVLPDGGAG----LTALLQQLSDDLVCSEVAD 475 Query: 477 RLLANAVDKLSGLATRIASAAVQSPSLPYYVADEMLRLTGHVALGWMW 524 + V L L ++ +A+ LPY+VAD+ L L W W Sbjct: 476 KAFQTQVTVLCDLTRQLVAASALDRQLPYWVADDYLHAVAMTLLAWAW 523 >ref|YP_002798618.1| acyl-CoA dehydrogenase [Azotobacter vinelandii DJ] gb|ACO77643.1| acyl-CoA dehydrogenase [Azotobacter vinelandii DJ] Length = 585 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 330/585 (56%), Positives = 397/585 (67%), Gaps = 12/585 (2%) Query: 4 HYTPPLRDFAFVLNEVLQAPQVLRALPAHAEIDGELMMQVLEEAGRFAADVVAPLNGIGD 63 HY PLRD FV+ E L AP + +PA +DGEL QV+EEA RFA+ V+APLN GD Sbjct: 3 HYQAPLRDMRFVIEEWLAAPADWQGMPAFESLDGELAAQVIEEAARFASGVLAPLNAPGD 62 Query: 64 REGCRLENGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSAANH 123 R+GCR ENG VTTP GF AY F GGW ALACAPE GGQGLP +L+ AL EM+ + NH Sbjct: 63 RQGCRFENGRVTTPDGFPAAYRAFVEGGWAALACAPEDGGQGLPQLLNAALLEMIYSTNH 122 Query: 124 GWTMYPGLLHGAYACLAAHGSPELQARYLEKIASGQWLATMCLTEAQAGSDLGQLRTRAV 183 W MYPG+ HGAY CL AHG+PEL+ RYL I SG+ L TMCLTE QAGSD+G LR+RA Sbjct: 123 AWAMYPGIAHGAYECLRAHGTPELRERYLADIVSGEILPTMCLTEPQAGSDVGLLRSRAE 182 Query: 184 PQEDGSYRLTGDKIFISGGEHDLTPNIIHLVLARLPDALPGSKGLSLFLAPRVLDDGSRN 243 P DG YRL+G K+F SGGEHDLT NI+HLVLARLPDA PGS+G+SLFL P++L DG RN Sbjct: 183 PAADGGYRLSGSKLFASGGEHDLTGNILHLVLARLPDAPPGSRGISLFLVPKLLPDGRRN 242 Query: 244 GVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQGLGLA 303 V C GIEHK+GI GSATC+L FE A+ WL+GE +GLAAMFVMMN+ARLHVG QGLG A Sbjct: 243 AVRCDGIEHKLGIRGSATCTLSFEHAEGWLLGEPHKGLAAMFVMMNSARLHVGLQGLGHA 302 Query: 304 EAAWQRASAYARERRQSRA----PG--SSGNDLIVRHPAVQKLLMEQRCRIEGARLLTCW 357 EAAWQ A+ YA ERRQ RA PG + D I HPA++++L+E R EG R L W Sbjct: 303 EAAWQNAAQYAAERRQMRAVRRPPGRAEAPADPIHYHPAMRRVLLELRTLTEGMRALGYW 362 Query: 358 AGLLLDLAEHDTDAAMRRVHHERLEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVETG 417 LLD AE D A R R +TP++KAF T+QGF+ AS ALQVFGG+GYV E Sbjct: 363 TAHLLDEAEQGADPARRARAQGRAMLLTPLVKAFFTEQGFRLASAALQVFGGYGYVQEYA 422 Query: 418 IEQFMRDARITMIYEGTNEIQAIDFLMRKVLGDEGKRLDDFLTLVRADIEDGTLLGEQAR 477 IEQ +RD+RI MIYEG+NEIQA D L+RKVLGD G L D L RA+ E + + A Sbjct: 423 IEQTLRDSRIAMIYEGSNEIQANDLLLRKVLGDGGAVLRDLLEEFRAEAEVAAICPDCAA 482 Query: 478 L---LANAVDKLSGLATRIASAAVQSPSLPYYVADEMLRLTGHVALGWMWLRAGRRALSA 534 LA+ D L+ A +A+A Q P PY A + LRL G VAL + WLR+ R A + Sbjct: 483 FAATLAHYCDCLTTAAEGLAAATTQDPERPYRAAGDFLRLLGLVALAFAWLRSARLA-AG 541 Query: 535 MASDPAWYGGKRDAACYHFAFVFAEVHQLSSVIEGCLATGLPPLP 579 DP +Y GK ++A + FA++ E ++IE LP LP Sbjct: 542 RGGDP-FYAGKLESAAFFFAYLLPEADHRLALIEASRQP-LPFLP 584 >ref|YP_004157340.1| acyL-CoA dehydrogenase domain-containing protein [Variovorax paradoxus EPS] gb|ADU39229.1| acyl-CoA dehydrogenase domain-containing protein [Variovorax paradoxus EPS] Length = 586 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 311/531 (58%), Positives = 368/531 (69%), Gaps = 10/531 (1%) Query: 3 MHYTPPLRDFAFVLNEVLQAPQVLRALPAHAEIDGELMMQVLEEAGRFAADVVAPLNGIG 62 M Y P D F+LN VL AP L+AL AE+D L QVL+EA RF DVVAP+N G Sbjct: 1 MDYRPRPEDVRFLLNAVLDAPARLQALAPFAEVDEALQSQVLDEAARFVGDVVAPINREG 60 Query: 63 DREGCRLENGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 D GC + G V +PPGF AY F GGWPAL+ A E GGQGLP VL+ LYE LSAAN Sbjct: 61 DEIGCHFDKGEVVSPPGFRAAYQAFVDGGWPALSAATEDGGQGLPSVLEAVLYEWLSAAN 120 Query: 123 HGWTMYPGLLHGAYACLAAHGSPELQARYLEKIASGQWLATMCLTEAQAGSDLGQLRTRA 182 HG TM PGLLHGAYAC+ HGS EL++RYL+KIA+G+WLATMCLTE+ AGSDLGQ+RTRA Sbjct: 121 HGLTMAPGLLHGAYACIKHHGSDELKSRYLQKIATGEWLATMCLTESHAGSDLGQVRTRA 180 Query: 183 VPQEDGSYRLTGDKIFISGGEHDLTPNIIHLVLARLPDALPGSKGLSLFLAPRVLDDGSR 242 VPQ DGS+R++G KIFISGGEHDLTPNI+HLVL RLPDA G KGLSL L P++L DG+R Sbjct: 181 VPQADGSFRVSGGKIFISGGEHDLTPNIVHLVLCRLPDAPAGPKGLSLVLMPKLLPDGAR 240 Query: 243 NGVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQGLGL 302 N VHC IE KMG+HGS TCS+ F+ A WLVGEAGRGLAAMFVMMN+ARLHV QG+GL Sbjct: 241 NAVHCERIEEKMGLHGSPTCSMRFDDATGWLVGEAGRGLAAMFVMMNSARLHVALQGIGL 300 Query: 303 AEAAWQRASAYARERRQSRAP-------GSSGNDLIVRHPAVQKLLMEQRCRIEGARLLT 355 +AAWQ+A AYA ERRQ RAP G+ DLI HPA++++L QR I+GAR L Sbjct: 301 LDAAWQKADAYAAERRQMRAPGAVPANRGTEAADLIAEHPAIRRILDTQRAWIDGARTLA 360 Query: 356 CWAGLLLDLAEHDTDAAMRRVHHERLEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVE 415 + L+LD+A HD D R +TPV+KA T Q F AS LQVFGGHGYV E Sbjct: 361 YRSALMLDVAAHDADPKARERAQRWCSLVTPVLKAACTHQAFHGASECLQVFGGHGYVRE 420 Query: 416 TGIEQFMRDARITMIYEGTNEIQAIDFLMRKVLGDEGKRLDDFLTLVRADIEDGTLLGEQ 475 GIEQ +RDAR+TMIYEGTNEIQAID L+RKVL D G + L +R ++ E Sbjct: 421 WGIEQVVRDARVTMIYEGTNEIQAIDLLVRKVLPDGGAAMSAVLLELRDTLDASR---EA 477 Query: 476 ARLLANAVDKLSGLATRIASAAVQSPSLPYYVADEMLRLTGHVALGWMWLR 526 + + +L L T IA +A +P LPY VAD+ LR+ + W W R Sbjct: 478 DADVQRRLAQLRYLGTTIAMSAHANPVLPYEVADDYLRVVMLTMMAWAWAR 528 >ref|YP_002946283.1| acyl-CoA dehydrogenase domain-containing protein [Variovorax paradoxus S110] gb|ACS21017.1| acyl-CoA dehydrogenase domain protein [Variovorax paradoxus S110] Length = 589 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 319/538 (59%), Positives = 362/538 (67%), Gaps = 20/538 (3%) Query: 3 MHYTPPLRDFAFVLNEVLQAPQVLRALPAHAEIDGELMMQVLEEAGRFAADVVAPLNGIG 62 M Y P D F+LN VL AP LRAL AE+D L QVLEEA RF A+ VAP+N G Sbjct: 1 MDYRPRPEDSRFILNAVLDAPSKLRALAPFAEVDEALQQQVLEEAARFVAEAVAPINRGG 60 Query: 63 DREGCRLENGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 D GCR NG V TPPGF AY F GGWP+L+ APE GGQGLP VL+ LYE LSAAN Sbjct: 61 DETGCRFANGEVATPPGFRAAYQAFVDGGWPSLSAAPEDGGQGLPTVLEAILYEWLSAAN 120 Query: 123 HGWTMYPGLLHGAYACLAAHGSPELQARYLEKIASGQWLATMCLTEAQAGSDLGQLRTRA 182 HG TM PGLLHGAYACL HGS EL+A YL KIA+G+WLATMCLTEA AGSDLGQ+RTRA Sbjct: 121 HGLTMAPGLLHGAYACLKHHGSDELKALYLSKIATGEWLATMCLTEAHAGSDLGQVRTRA 180 Query: 183 VPQEDGSYRLTGDKIFISGGEHDLTPNIIHLVLARLP----DALPGSKGLSLFLAPRVLD 238 Q DGS R+ G KIFISGGEHDLTPNI+HLVL R+ A G KGLSL L P++L Sbjct: 181 TAQADGSLRVNGGKIFISGGEHDLTPNIVHLVLCRMHGSEVQAPAGPKGLSLVLVPKLLP 240 Query: 239 DGSRNGVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQ 298 DG+RN VHC IE KMG+HGS TC++ F+ A WLVGE GRGLAAMFVMMNAARLHV Q Sbjct: 241 DGTRNAVHCERIEEKMGLHGSPTCTMRFDDATGWLVGEPGRGLAAMFVMMNAARLHVALQ 300 Query: 299 GLGLAEAAWQRASAYARERRQSRAP-------GSSGNDLIVRHPAVQKLLMEQRCRIEGA 351 G+GL +AAWQ+A AYA ERRQ RAP GS DLI HPA++++L QR I+GA Sbjct: 301 GIGLLDAAWQKADAYAAERRQMRAPGTVPASRGSEAADLIAEHPAIRRILDTQRAWIDGA 360 Query: 352 RLLTCWAGLLLDLAEHDTDAAMRRVHHERLEFITPVIKAFLTDQGFQCASRALQVFGGHG 411 R L + L+LD+A HD DA R +TPV+KA T Q F AS LQVFGGHG Sbjct: 361 RTLAYRSALMLDVAAHDADAKARERAQRWCSLVTPVLKAACTQQAFHGASECLQVFGGHG 420 Query: 412 YVVETGIEQFMRDARITMIYEGTNEIQAIDFLMRKVLGDEGKRLDDFLTLVRADIEDGTL 471 YV E GIEQ +RDAR+TMIYEGTNEIQAID L+RKVL D G + L +R D D + Sbjct: 421 YVREWGIEQIVRDARVTMIYEGTNEIQAIDLLVRKVLPDGGAGMSAVLLELR-DALDASR 479 Query: 472 LGE---QARLLANAVDKLSGLATRIASAAVQSPSLPYYVADEMLRLTGHVALGWMWLR 526 + Q RL +L L T IA AA +P LPY VAD LR L W W R Sbjct: 480 DADADVQRRLA-----QLRYLGTTIAMAAQANPVLPYEVADAYLRAVMLAMLAWAWAR 532