BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5179.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777391.1| branched-chain amino acid ABC transporter pe... 480 e-133 ref|YP_521556.1| inner-membrane translocator [Rhodoferax ferrire... 341 9e-92 ref|YP_981041.1| inner-membrane translocator [Polaromonas naphth... 337 2e-90 ref|YP_001790026.1| inner-membrane translocator [Leptothrix chol... 332 5e-89 ref|YP_287294.1| inner-membrane translocator:ABC transporter rel... 318 9e-85 >ref|YP_003777391.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65483.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 346 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 338/346 (97%), Positives = 340/346 (98%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR Sbjct: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 Query: 61 PGPLWLLLVLAVCAAGMQAAQLLRAGQAALLPRTLLGTLGVPLAIAALVWWAAPQQFALP 120 PGPLWLLLVLA+CAAGMQAA LLRAGQAALLPR LLGTLGVPL IAALVWWAAPQQFALP Sbjct: 61 PGPLWLLLVLALCAAGMQAASLLRAGQAALLPRALLGTLGVPLVIAALVWWAAPQQFALP 120 Query: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP Sbjct: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 Query: 181 AFWDERWNLAALTLSAQTVVVVVAAAALLVALWLFSGRTLYGKALRATAVNRLGARLMGI 240 AFWDERWNLA+LTLSAQTVVVV AAAALLVALW FSGRTLYGKALRATAVNRLGARLMGI Sbjct: 181 AFWDERWNLASLTLSAQTVVVVAAAAALLVALWFFSGRTLYGKALRATAVNRLGARLMGI 240 Query: 241 STTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLIGLKGFVAATIGALASFPAAAGG 300 STTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLIGLKGFVAATIGALASFPAAAGG Sbjct: 241 STTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLIGLKGFVAATIGALASFPAAAGG 300 Query: 301 ALLVGLLESFSSFWASDFKEVIVFLALLPILLWRSLVTPAHDEDEE 346 ALLVGLLESFSSFWASDFKEVIVFLALLPILLWRSLV PAHDEDEE Sbjct: 301 ALLVGLLESFSSFWASDFKEVIVFLALLPILLWRSLVIPAHDEDEE 346 >ref|YP_521556.1| inner-membrane translocator [Rhodoferax ferrireducens T118] gb|ABD68025.1| inner-membrane translocator [Rhodoferax ferrireducens T118] Length = 345 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 217/344 (63%), Positives = 265/344 (77%), Gaps = 1/344 (0%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD SIA+IL LDG+TNG VY L+ +A VLVF+VTR++FIPQGEFVAYGALTLA+ Q G+ Sbjct: 1 MDFSIASILLLDGITNGAVYALLGLATVLVFSVTRVIFIPQGEFVAYGALTLAIFQTGKV 60 Query: 61 PGPLWLLLVLAVCAAGMQAA-QLLRAGQAALLPRTLLGTLGVPLAIAALVWWAAPQQFAL 119 PG +WLLL++AV AA M A G A + L L PL ++ L WAAP Q L Sbjct: 61 PGTVWLLLIMAVLAALMDARLSWQHTGDAKRALKAGLSALAAPLVVSLLSIWAAPHQLPL 120 Query: 120 PVQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRT 179 VQ LLT+ ++TA GPL+Y++ Y+S+ADAS L LLIVSVG+H AMTGLGL+FFGAEGFR Sbjct: 121 LVQALLTVAIVTAFGPLVYRLAYQSLADASSLVLLIVSVGVHFAMTGLGLLFFGAEGFRN 180 Query: 180 PAFWDERWNLAALTLSAQTVVVVVAAAALLVALWLFSGRTLYGKALRATAVNRLGARLMG 239 P+FWDER NL L ++ Q +++V+ + A++V LW F RTLYGKAL+ATAVNRLGARLMG Sbjct: 181 PSFWDERLNLGPLAITGQAIIIVLTSLAMIVLLWQFFNRTLYGKALQATAVNRLGARLMG 240 Query: 240 ISTTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLIGLKGFVAATIGALASFPAAAG 299 IST AG+ +FA+AA IGALSG+LIGP +T+FYDSGFLIGLKGFVAA +G L S+P AA Sbjct: 241 ISTHGAGQATFAMAALIGALSGLLIGPTTTVFYDSGFLIGLKGFVAAVMGGLHSYPLAAL 300 Query: 300 GALLVGLLESFSSFWASDFKEVIVFLALLPILLWRSLVTPAHDE 343 GAL VGL+ESF SFWAS FKEVIVF +LPILLWRS+ +E Sbjct: 301 GALFVGLVESFGSFWASAFKEVIVFTLVLPILLWRSVAGGNEEE 344 >ref|YP_981041.1| inner-membrane translocator [Polaromonas naphthalenivorans CJ2] gb|ABM36120.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Polaromonas naphthalenivorans CJ2] Length = 346 Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 221/345 (64%), Positives = 271/345 (78%), Gaps = 1/345 (0%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD SIA+IL LDG+TNG +Y L+ +A VLVFTVTR++FIPQGEFVAYGALTLA+LQ G+ Sbjct: 1 MDFSIASILLLDGVTNGAIYALLGLATVLVFTVTRVIFIPQGEFVAYGALTLAILQTGKI 60 Query: 61 PGPLWLLLVLAVCAAGMQAAQLLRAGQAALLP-RTLLGTLGVPLAIAALVWWAAPQQFAL 119 PG +WLLL+LA AA M R AL ++ L TL +P+ +A L WAAP Q L Sbjct: 61 PGTVWLLLILAAIAAAMDGVGAWRRHHNALATLKSALKTLVIPVVVAGLTAWAAPLQMPL 120 Query: 120 PVQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRT 179 +Q LL++ ++TA GPL+Y+V Y+S+ADAS L LLIVSVG+H AMTGLGL+FFGAEGFR Sbjct: 121 LLQALLSVCIVTAFGPLVYRVAYQSLADASPLVLLIVSVGVHFAMTGLGLLFFGAEGFRN 180 Query: 180 PAFWDERWNLAALTLSAQTVVVVVAAAALLVALWLFSGRTLYGKALRATAVNRLGARLMG 239 P+FWD R +L ALTLS Q +++++ + AL+V LWLF R+LYGKALRATAVNRLGARLMG Sbjct: 181 PSFWDLRMSLGALTLSGQAIIIMLTSVALIVLLWLFFERSLYGKALRATAVNRLGARLMG 240 Query: 240 ISTTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLIGLKGFVAATIGALASFPAAAG 299 IS+ AG+L+FA+AA IGALSG+LIGP +TIFYDSGFLIGLKGFVAA LAS+P A Sbjct: 241 ISSQSAGQLTFAMAALIGALSGLLIGPTTTIFYDSGFLIGLKGFVAAVAAGLASYPGALL 300 Query: 300 GALLVGLLESFSSFWASDFKEVIVFLALLPILLWRSLVTPAHDED 344 GAL VGL+E+F+SFWAS FKEVIVF +LP+LLWRSL DE+ Sbjct: 301 GALFVGLVEAFASFWASAFKEVIVFTLILPVLLWRSLQGGHSDEE 345 >ref|YP_001790026.1| inner-membrane translocator [Leptothrix cholodnii SP-6] gb|ACB33261.1| inner-membrane translocator [Leptothrix cholodnii SP-6] Length = 345 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 224/345 (64%), Positives = 272/345 (78%), Gaps = 1/345 (0%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD SIA+IL LDG TNG +Y L+A+A VL+F VTR++FIPQGEFVA+GALTLAMLQ GQ Sbjct: 1 MDFSIASILALDGFTNGAIYALLAMATVLLFAVTRVIFIPQGEFVAFGALTLAMLQMGQV 60 Query: 61 PGPLWLLLVLAVCAAGMQAAQ-LLRAGQAALLPRTLLGTLGVPLAIAALVWWAAPQQFAL 119 PG +WLLL++A AA + L R AA L +L TL P+AI+ L WAAPQQ L Sbjct: 61 PGTVWLLLIMAGLAAATELFHGLRRRLPAAKLAGAVLATLAYPVAISLLAGWAAPQQLPL 120 Query: 120 PVQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRT 179 +Q LLTL ++T +G L+Y++ YES+ADA+VL LLIVSVG+H A+TGLGL+FFGAEGFR Sbjct: 121 LLQALLTLAIVTPMGSLLYRLAYESLADATVLVLLIVSVGVHFALTGLGLLFFGAEGFRN 180 Query: 180 PAFWDERWNLAALTLSAQTVVVVVAAAALLVALWLFSGRTLYGKALRATAVNRLGARLMG 239 P+FWDER+ L LS QT+++ +A+ AL+V LWLF R+LYGKALRATAVNRLGARLMG Sbjct: 181 PSFWDERFAAGPLMLSGQTLIIFLASGALIVMLWLFFERSLYGKALRATAVNRLGARLMG 240 Query: 240 ISTTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLIGLKGFVAATIGALASFPAAAG 299 I TT AG+LSF +AAFIGALSG+LIGP +TIFYDSGFLIGLKGFVAA L+S+P A Sbjct: 241 IKTTGAGRLSFTMAAFIGALSGLLIGPTTTIFYDSGFLIGLKGFVAAVFAGLSSYPLAMV 300 Query: 300 GALLVGLLESFSSFWASDFKEVIVFLALLPILLWRSLVTPAHDED 344 GAL VG+LESF SFWAS FKEVIVF ++LP+LLWRSL P +E+ Sbjct: 301 GALGVGVLESFGSFWASSFKEVIVFTSILPVLLWRSLRDPHTEEE 345 >ref|YP_287294.1| inner-membrane translocator:ABC transporter related [Dechloromonas aromatica RCB] gb|AAZ48824.1| amino acid/amide ABC transporter ATP-binding protein 1, HAAT family / amino acid/amide ABC transporter membrane protein 1, HAAT family / amino acid/amide ABC transporter membrane protein 2, HAAT family [Dechloromonas aromatica RCB] Length = 950 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 201/336 (59%), Positives = 255/336 (75%) Query: 1 MDSSIAAILTLDGLTNGIVYGLIAIALVLVFTVTRILFIPQGEFVAYGALTLAMLQQGQR 60 MD I +L DG+TNG +Y L+A+ALVLVF VTR++FIPQGEFVA+GALTLA LQ G+ Sbjct: 1 MDLQILLLLGQDGITNGAIYALLALALVLVFAVTRVIFIPQGEFVAFGALTLASLQAGKV 60 Query: 61 PGPLWLLLVLAVCAAGMQAAQLLRAGQAALLPRTLLGTLGVPLAIAALVWWAAPQQFALP 120 PG +WLLL L A + +LLR G+ A LP L+ +G+PL AA ++ P Q L Sbjct: 61 PGTVWLLLGLGTTVAILDGYRLLREGRYAKLPPLLIVNVGIPLLFAAGLFAMPPTQLPLW 120 Query: 121 VQVLLTLLLITALGPLMYQVVYESMADASVLQLLIVSVGIHLAMTGLGLVFFGAEGFRTP 180 QV++ +LL+ LGP++Y++ ++ +A A VL LLIV+V +HLA+ GLGL+FFGAEG+RTP Sbjct: 121 TQVVIAMLLVVPLGPMIYRIAFQPLASAPVLVLLIVAVAVHLALIGLGLLFFGAEGWRTP 180 Query: 181 AFWDERWNLAALTLSAQTVVVVVAAAALLVALWLFSGRTLYGKALRATAVNRLGARLMGI 240 AF D + LA L QTV+VVVA+A L++ L+ F RT+YGKALRATA+NR GARLMGI Sbjct: 181 AFTDLSFELAGAPLQGQTVLVVVASALLIIGLYFFFERTIYGKALRATAMNRTGARLMGI 240 Query: 241 STTLAGKLSFAVAAFIGALSGVLIGPMSTIFYDSGFLIGLKGFVAATIGALASFPAAAGG 300 LAGKL F +AA IGA SG+LI P++TI+YDSGFLIGLKGFV A IG LAS+P AA G Sbjct: 241 PPVLAGKLCFTLAAAIGAFSGILIAPITTIYYDSGFLIGLKGFVGAIIGGLASYPLAALG 300 Query: 301 ALLVGLLESFSSFWASDFKEVIVFLALLPILLWRSL 336 A+LVGLLES+SSF+AS FKEVIVF ++P+LLWRSL Sbjct: 301 AILVGLLESYSSFYASAFKEVIVFTLIIPVLLWRSL 336