BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5178.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777390.1| branched-chain amino acid ABC transporter pe... 675 0.0 ref|YP_981040.1| extracellular ligand-binding receptor [Polaromo... 447 e-123 ref|YP_001790027.1| extracellular ligand-binding receptor [Lepto... 428 e-118 ref|YP_521557.1| extracellular ligand-binding receptor [Rhodofer... 424 e-116 ref|YP_001795920.1| branched amino acid transporter permease, pe... 404 e-110 >ref|YP_003777390.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65482.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 381 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 365/381 (95%), Positives = 374/381 (98%) Query: 1 MKTKLAIKAGVLAAMLACAGAAQAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIGGEK 60 MKTKLAIKAGVLAAMLACAG A AELTIGVVMSLTGPGSGLGIPAKNGFALWPETI GEK Sbjct: 1 MKTKLAIKAGVLAAMLACAGIAHAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIAGEK 60 Query: 61 VKLIILDDATDPTQASKNARRLVAEDKVDLLIGSAAVPPTLAVADVALESQTVQLAISPI 120 VK+IILDDATDPTQASKNARRLVAEDKVDL+IGSAAVPPTLA+ADVALE+QTVQLAISPI Sbjct: 61 VKMIILDDATDPTQASKNARRLVAEDKVDLIIGSAAVPPTLAIADVALETQTVQLAISPI 120 Query: 121 ETAEGKDAWTFRLPQSTAVMAGGVVEQMKKMGVKTIGFLGYSDSYGENWLKEVQRLAIAA 180 ETAEGKDAWTFRLPQSTAVMAGGVV QMKK+GVKTIGFLGYSDSYGENWLKEVQRLA AA Sbjct: 121 ETAEGKDAWTFRLPQSTAVMAGGVVNQMKKLGVKTIGFLGYSDSYGENWLKEVQRLATAA 180 Query: 181 GMKMGTVERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQT 240 GMKMGTVERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQT Sbjct: 181 GMKMGTVERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQT 240 Query: 241 HSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLAMDFVTRYEKQFGAGTRNL 300 HSAASRDLIRLGGKDVEG+YVISGPAVVPEALPDSN SKKLAMDFVTRYEKQFGAG+RNL Sbjct: 241 HSAASRDLIRLGGKDVEGAYVISGPAVVPEALPDSNASKKLAMDFVTRYEKQFGAGSRNL 300 Query: 301 FAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETAGPIQISQGTLNYSAKDHFG 360 FAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALET+GPIQI+QGTLNYS KDHFG Sbjct: 301 FAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETSGPIQITQGTLNYSPKDHFG 360 Query: 361 LGDDARIMLTIQNGNWKAVNP 381 LGDDARIMLTIQNGNWKAVNP Sbjct: 361 LGDDARIMLTIQNGNWKAVNP 381 >ref|YP_981040.1| extracellular ligand-binding receptor [Polaromonas naphthalenivorans CJ2] gb|ABM36119.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas naphthalenivorans CJ2] Length = 377 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 224/363 (61%), Positives = 290/363 (79%), Gaps = 1/363 (0%) Query: 15 MLACAGAAQAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIGGEKVKLIILDDATDPTQ 74 +LAC G A A++TIGV + LTGP SGLGIP N LWP TIGGEKV+LIILDDATDPT Sbjct: 14 LLAC-GTALADITIGVSLPLTGPASGLGIPVNNQMKLWPSTIGGEKVRLIILDDATDPTN 72 Query: 75 ASKNARRLVAEDKVDLLIGSAAVPPTLAVADVALESQTVQLAISPIETAEGKDAWTFRLP 134 +KNA+R V +DKVD++IGS A P + +ADVA ES+TVQL++SPI+ GKD WTFR+P Sbjct: 73 GTKNAKRFVTDDKVDIIIGSVATPVAIPIADVAAESKTVQLSLSPIQLPPGKDGWTFRMP 132 Query: 135 QSTAVMAGGVVEQMKKMGVKTIGFLGYSDSYGENWLKEVQRLAIAAGMKMGTVERFSRAD 194 QS AVM+ ++ MKK GVKT+GFLGY+D+YGE WLK+ A G+K+ ERF+R+D Sbjct: 133 QSNAVMSHAMMGLMKKQGVKTVGFLGYTDAYGEGWLKDFTAEAEKNGIKVIATERFARSD 192 Query: 195 TSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQTHSAASRDLIRLGGK 254 TSVT Q L++V++NPDA+L+VASGSGAAMPH A++ERGYKGKI+QTH+AA+RDL+R+GGK Sbjct: 193 TSVTGQVLKLVAANPDAMLIVASGSGAAMPHMAVVERGYKGKIYQTHAAATRDLMRVGGK 252 Query: 255 DVEGSYVISGPAVVPEALPDSNPSKKLAMDFVTRYEKQFGAGTRNLFAAHTYDAQLVLQK 314 VEG+YV+SGPAV+ E LPDS+PSKK A+DFV ++EK +G G+RN FA H YDA+LVL+K Sbjct: 253 AVEGAYVVSGPAVIAEQLPDSHPSKKAAIDFVQKFEKAYGPGSRNQFAGHGYDAELVLEK 312 Query: 315 VVPEALKKAKPGTPAFRAALKEALETAGPIQISQGTLNYSAKDHFGLGDDARIMLTIQNG 374 +VP ALKKAKPGTP FRAAL++A+ET G ++ G +N++ DH+G + +ML + NG Sbjct: 313 IVPMALKKAKPGTPEFRAALRDAMETMGRSVVAHGVVNWTKDDHWGYTPETGVMLKVVNG 372 Query: 375 NWK 377 +WK Sbjct: 373 DWK 375 >ref|YP_001790027.1| extracellular ligand-binding receptor [Leptothrix cholodnii SP-6] gb|ACB33262.1| Extracellular ligand-binding receptor [Leptothrix cholodnii SP-6] Length = 380 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 222/377 (58%), Positives = 292/377 (77%), Gaps = 3/377 (0%) Query: 4 KLAIKAGVLAAMLACAG-AAQAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIGGEKVK 62 K K AA+L +G AA A++TIGV + LTGP SGLGIPA NG LWP IGGEK+ Sbjct: 2 KTVFKQIAAAALLTLSGTAALADITIGVSLPLTGPASGLGIPANNGVKLWPTHIGGEKLN 61 Query: 63 LIILDDATDPTQASKNARRLVAEDKVDLLIGSAAVPPTLAVADVALESQTVQLAISPIET 122 +++LDDATDPT+A +NA+R V++DKVDL++GS A P LA+AD ES T +SP Sbjct: 62 VVVLDDATDPTKAVQNAKRFVSDDKVDLVVGSVATPAALAMADTVAESGTPHFMLSPAVL 121 Query: 123 AEGKDAWTFRLPQSTAVMAGGVVEQMKKMGVKTIGFLGYSDSYGENWLKEVQRLAIAAGM 182 GKD W FRLPQS AVM+ +++ M K+GVKT+GFLGY+D+YGE+WLK+ Q A A G+ Sbjct: 122 QAGKDGWAFRLPQSNAVMSHAMLKHMSKLGVKTVGFLGYTDAYGESWLKDFQAEATAMGL 181 Query: 183 --KMGTVERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQT 240 K+ ERF+R+DT+VT QAL++VS+NPDA+L+VASGSGAAMPHKA++ERG+KGKI+QT Sbjct: 182 PIKIVATERFARSDTAVTGQALKLVSANPDAMLIVASGSGAAMPHKAIVERGFKGKIYQT 241 Query: 241 HSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLAMDFVTRYEKQFGAGTRNL 300 H+AA+RDL+R+GGKDVEG++V+SGPAVV E L D++PSKK+A++FV +YEK +GAG+RN Sbjct: 242 HAAATRDLMRIGGKDVEGAFVVSGPAVVAEQLSDAHPSKKIALEFVQKYEKAYGAGSRNQ 301 Query: 301 FAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETAGPIQISQGTLNYSAKDHFG 360 FA H YDA +VL+K+VP ALKKAKPGT FRAALKEA ET G ++ G LNY+ +H+G Sbjct: 302 FAGHAYDAAVVLEKIVPMALKKAKPGTKEFRAALKEATETMGRTVVAHGVLNYTKDNHWG 361 Query: 361 LGDDARIMLTIQNGNWK 377 + ++L + NG+WK Sbjct: 362 FTTETGVILKVVNGDWK 378 >ref|YP_521557.1| extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] gb|ABD68026.1| Extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] Length = 377 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 219/358 (61%), Positives = 285/358 (79%) Query: 20 GAAQAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIGGEKVKLIILDDATDPTQASKNA 79 G+A A++TIG+ + L+GP SGLGIP N LWP +I GEK+K+I+LDDATDPT KNA Sbjct: 18 GSALADITIGISLPLSGPASGLGIPMGNQIKLWPTSIAGEKLKVIVLDDATDPTNGVKNA 77 Query: 80 RRLVAEDKVDLLIGSAAVPPTLAVADVALESQTVQLAISPIETAEGKDAWTFRLPQSTAV 139 +R V EDK D+++GSAA P + +A VA E++TVQ+A SP GKDAWTFRLPQS V Sbjct: 78 KRFVTEDKADIIMGSAATPVAIPMAAVAAEAETVQIAFSPAVLPPGKDAWTFRLPQSNDV 137 Query: 140 MAGGVVEQMKKMGVKTIGFLGYSDSYGENWLKEVQRLAIAAGMKMGTVERFSRADTSVTA 199 MA +V MKK GVKT+GFLGY+D+YGE+WLKE A A G+K+ ERF+R+DTSVTA Sbjct: 138 MAHAMVALMKKQGVKTVGFLGYTDAYGESWLKEFTAQANANGIKLIGTERFARSDTSVTA 197 Query: 200 QALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQTHSAASRDLIRLGGKDVEGS 259 QAL++V++NPDA+L+VASGSGAAMPH A+++RGYKGKI+QTH+AASRDL+R+GGK VEG+ Sbjct: 198 QALKLVAANPDAMLIVASGSGAAMPHMAVVDRGYKGKIYQTHAAASRDLMRVGGKAVEGA 257 Query: 260 YVISGPAVVPEALPDSNPSKKLAMDFVTRYEKQFGAGTRNLFAAHTYDAQLVLQKVVPEA 319 YV+SGPAV+ E LPDS+PSKK+A+DFV +YEK +G G+RN FA H+YDA L+L+KVVP A Sbjct: 258 YVVSGPAVIAEQLPDSHPSKKVAIDFVQQYEKAYGPGSRNQFAGHSYDAVLILEKVVPVA 317 Query: 320 LKKAKPGTPAFRAALKEALETAGPIQISQGTLNYSAKDHFGLGDDARIMLTIQNGNWK 377 LKK KPGT FRAAL++A+ET G +S G LN++ +H+G ++ +ML + NG+WK Sbjct: 318 LKKGKPGTKEFRAALRDAMETMGRTVVSHGVLNWTHDNHWGFTNETGVMLKVVNGDWK 375 >ref|YP_001795920.1| branched amino acid transporter permease, periplasmic binding component [Cupriavidus taiwanensis LMG 19424] emb|CAP63200.1| putative branched amino acid transport system permease, periplasmic binding component [Cupriavidus taiwanensis LMG 19424] Length = 383 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 208/380 (54%), Positives = 280/380 (73%), Gaps = 3/380 (0%) Query: 1 MKTKLAIKAGVLAAMLACA---GAAQAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIG 57 M ++ A + LA +A A A A++T+GV +S TGP + LGIP KN A P+ IG Sbjct: 1 MTSQTAARLARLALGIAVAFTATTALADITVGVSLSTTGPSASLGIPQKNSLAYLPQRIG 60 Query: 58 GEKVKLIILDDATDPTQASKNARRLVAEDKVDLLIGSAAVPPTLAVADVALESQTVQLAI 117 GE V+ I+LDDA+DPTQ +K ARR VAEDKVD+++GS+AV P++A+A+VA E+QTVQLA Sbjct: 61 GEPVRYIVLDDASDPTQGAKAARRFVAEDKVDIILGSSAVAPSIAIAEVADEAQTVQLAF 120 Query: 118 SPIETAEGKDAWTFRLPQSTAVMAGGVVEQMKKMGVKTIGFLGYSDSYGENWLKEVQRLA 177 SPIE G+ AWTFRL Q +MA V K GVKT+GF+G++D+YGE WLK+ A Sbjct: 121 SPIELKPGRGAWTFRLAQPVRLMANAVAATAKTHGVKTMGFIGFADAYGETWLKDFTAAA 180 Query: 178 IAAGMKMGTVERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKI 237 A G+++ ER+ RADTSVTAQ L+++++ PDA+L+ +G+GAA+PH L ERGY G + Sbjct: 181 TANGIRLIATERYGRADTSVTAQVLKLIAARPDAILIAGAGTGAALPHTTLRERGYGGTL 240 Query: 238 FQTHSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLAMDFVTRYEKQFGAGT 297 +QTH AA+RDLIR+GG+ V G+ + +GP +VPE LP +P +K A+D+VTRYEKQ+GA T Sbjct: 241 YQTHGAATRDLIRIGGRLVNGAILPAGPVIVPEQLPAGDPVRKPALDYVTRYEKQYGAET 300 Query: 298 RNLFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETAGPIQISQGTLNYSAKD 357 R F AH YDA LVL+++VP ALK+A+PGTPAFR AL+ ALET I +S G LN+SA+D Sbjct: 301 RTQFGAHAYDAGLVLERIVPVALKQARPGTPAFRQALRHALETERDIVVSHGVLNFSAQD 360 Query: 358 HFGLGDDARIMLTIQNGNWK 377 H+G R+M+TI+NGNWK Sbjct: 361 HYGFDQRGRVMVTIENGNWK 380