BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5176.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777388.1| type II 3-hydroxyacyl-CoA dehydrogenase [Her... 401 e-110 ref|YP_001790028.1| short-chain dehydrogenase/reductase SDR [Lep... 308 6e-82 ref|YP_521559.1| short-chain dehydrogenase/reductase SDR [Rhodof... 295 3e-78 ref|YP_549926.1| short-chain dehydrogenase/reductase SDR [Polaro... 292 3e-77 ref|YP_004157338.1| short-chain dehydrogenase/reductase sdr [Var... 290 1e-76 >ref|YP_003777388.1| type II 3-hydroxyacyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65480.1| 3-hydroxyacyl-CoA dehydrogenase type II protein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 242/254 (95%), Positives = 246/254 (96%) Query: 1 MQLQGQAALVTGGASGLGAETARQLVQAGARVSILDVNMEAAQALADELRCHAVRCDITD 60 MQLQGQAALVTGGASGLGAET RQLVQAGARVSILDVNMEAAQALADELRCHAVRCDITD Sbjct: 1 MQLQGQAALVTGGASGLGAETVRQLVQAGARVSILDVNMEAAQALADELRCHAVRCDITD 60 Query: 61 SASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSPMPLEDFSRIVNVNLIGTFNV 120 S SV+ AL AAQ+ NGAPRILINCAGIGGAKRMVGKDG PMPLEDFSRIVNVNLIGTFNV Sbjct: 61 SDSVETALQAAQQTNGAPRILINCAGIGGAKRMVGKDGKPMPLEDFSRIVNVNLIGTFNV 120 Query: 121 IRLTAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITSMTLPLARDLAQ 180 IRL AARMAAAE LAEGERGVIVATASVAAFDGQVGQAGYAASKGGIT+MTLPLARDLAQ Sbjct: 121 IRLAAARMAAAEALAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLARDLAQ 180 Query: 181 HGIRVVTIAPGLFLTPLLYKLPEEVQQSLASSIPFPKRLGKAEEYAQLALHIATNLSLNG 240 +GIRVVTIAPGLFLTPLLYKLPEEVQQSLASSIPFPKRLGKAEEYAQLALHIATNLSLNG Sbjct: 181 YGIRVVTIAPGLFLTPLLYKLPEEVQQSLASSIPFPKRLGKAEEYAQLALHIATNLSLNG 240 Query: 241 EVIRLDGALRLAPR 254 EVIRLDGALRLAPR Sbjct: 241 EVIRLDGALRLAPR 254 >ref|YP_001790028.1| short-chain dehydrogenase/reductase SDR [Leptothrix cholodnii SP-6] gb|ACB33263.1| short-chain dehydrogenase/reductase SDR [Leptothrix cholodnii SP-6] Length = 254 Score = 308 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 187/254 (73%), Positives = 214/254 (84%) Query: 1 MQLQGQAALVTGGASGLGAETARQLVQAGARVSILDVNMEAAQALADELRCHAVRCDITD 60 MQ+QGQAALVTGG SGLGA AR+L + GARV++LDVN AQA+A E+ A+RCDITD Sbjct: 1 MQIQGQAALVTGGGSGLGAAVARELARLGARVAVLDVNEAGAQAVAAEIGGVAMRCDITD 60 Query: 61 SASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSPMPLEDFSRIVNVNLIGTFNV 120 SASV AALDAAQ A+G RIL+N AGIGGAKR+VG+DGSP PLEDF R+V VNLIGT+N+ Sbjct: 61 SASVTAALDAAQAAHGPARILMNIAGIGGAKRIVGRDGSPAPLEDFERVVRVNLIGTYNM 120 Query: 121 IRLTAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITSMTLPLARDLAQ 180 IRL AARM EPLA+GERGV+V TASVAA+DGQVGQ YAASKGG+ S+TLPLARDLAQ Sbjct: 121 IRLAAARMVGLEPLADGERGVMVNTASVAAYDGQVGQEAYAASKGGVVSLTLPLARDLAQ 180 Query: 181 HGIRVVTIAPGLFLTPLLYKLPEEVQQSLASSIPFPKRLGKAEEYAQLALHIATNLSLNG 240 G+RVVT+APGLF TPL+ +LPE VQQSLA+SIPFPKRLG EE+A LA H+ N LNG Sbjct: 181 WGVRVVTLAPGLFATPLMKELPEAVQQSLAASIPFPKRLGHPEEFAALAAHVVINGHLNG 240 Query: 241 EVIRLDGALRLAPR 254 EVIRLDGALRLAPR Sbjct: 241 EVIRLDGALRLAPR 254 >ref|YP_521559.1| short-chain dehydrogenase/reductase SDR [Rhodoferax ferrireducens T118] gb|ABD68028.1| short-chain dehydrogenase/reductase SDR [Rhodoferax ferrireducens T118] Length = 254 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 171/254 (67%), Positives = 201/254 (79%) Query: 1 MQLQGQAALVTGGASGLGAETARQLVQAGARVSILDVNMEAAQALADELRCHAVRCDITD 60 M +QGQAALVTGG SGLG TAR+L + GA+V+ILDVN+ A+ +A E+ A +CD+T Sbjct: 1 MNIQGQAALVTGGGSGLGEATARELARLGAKVAILDVNLANAEKVAAEIGGVACQCDVTS 60 Query: 61 SASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSPMPLEDFSRIVNVNLIGTFNV 120 SVQAA+D A A+G RIL+ AGIG AKR+VGKDG+ PLEDF R+VNVNLIGT+NV Sbjct: 61 PDSVQAAIDTATAAHGPARILMQIAGIGSAKRVVGKDGNAAPLEDFVRVVNVNLIGTYNV 120 Query: 121 IRLTAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITSMTLPLARDLAQ 180 RL AA A EP+ +GERG +V TASVAAFDGQVGQ Y+ASK G+ MTLP+ARDLAQ Sbjct: 121 ARLFAAACAKLEPMEDGERGAMVFTASVAAFDGQVGQQAYSASKAGVAGMTLPMARDLAQ 180 Query: 181 HGIRVVTIAPGLFLTPLLYKLPEEVQQSLASSIPFPKRLGKAEEYAQLALHIATNLSLNG 240 HGIRV TIAPGLF TPL+ LPE VQ SLA+SIPFP+RLGK EE+AQLA HI +N LNG Sbjct: 181 HGIRVCTIAPGLFATPLMKTLPEAVQVSLAASIPFPQRLGKPEEFAQLAAHIVSNCHLNG 240 Query: 241 EVIRLDGALRLAPR 254 EVIRLDGALR+APR Sbjct: 241 EVIRLDGALRMAPR 254 >ref|YP_549926.1| short-chain dehydrogenase/reductase SDR [Polaromonas sp. JS666] gb|ABE45028.1| short-chain dehydrogenase/reductase SDR [Polaromonas sp. JS666] Length = 261 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 171/261 (65%), Positives = 200/261 (76%), Gaps = 7/261 (2%) Query: 1 MQLQGQAALVTGGASGLGAETARQLVQAGARVSILDVNMEAAQALADELRCH-------A 53 M +QGQAALVTG SGLG TAR+L + GA+V++LDVN+ A +A E+ A Sbjct: 1 MNIQGQAALVTGAGSGLGEATARELARLGAKVAVLDVNLANADKVAAEINAAHGDGSAIA 60 Query: 54 VRCDITDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSPMPLEDFSRIVNVN 113 +CDITD+ S+QAA+ A A+G RIL++ AGIG AKR+V +DGSP PLEDF R+VNVN Sbjct: 61 CQCDITDTESLQAAIAKATAAHGTARILMSIAGIGSAKRVVSRDGSPAPLEDFVRVVNVN 120 Query: 114 LIGTFNVIRLTAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITSMTLP 173 LIGT+NV RL AA A P +GERGV+V TASVAAFDGQVGQ Y+ASK G+ MTLP Sbjct: 121 LIGTYNVARLFAAECAKLAPQEDGERGVMVFTASVAAFDGQVGQQAYSASKSGVVGMTLP 180 Query: 174 LARDLAQHGIRVVTIAPGLFLTPLLYKLPEEVQQSLASSIPFPKRLGKAEEYAQLALHIA 233 +ARDLAQHGIRV TIAPGLF TPL+ LPE VQQSLA SIPFP RLGK EE+AQLA HI Sbjct: 181 MARDLAQHGIRVCTIAPGLFATPLMRTLPEPVQQSLADSIPFPPRLGKPEEFAQLASHIV 240 Query: 234 TNLSLNGEVIRLDGALRLAPR 254 TN+ LNGEVIRLDGALR+APR Sbjct: 241 TNMHLNGEVIRLDGALRMAPR 261 >ref|YP_004157338.1| short-chain dehydrogenase/reductase sdr [Variovorax paradoxus EPS] gb|ADU39227.1| short-chain dehydrogenase/reductase SDR [Variovorax paradoxus EPS] Length = 254 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 168/254 (66%), Positives = 201/254 (79%) Query: 1 MQLQGQAALVTGGASGLGAETARQLVQAGARVSILDVNMEAAQALADELRCHAVRCDITD 60 M+++GQAALVTGGASGLG TAR+L + GA+V++LD N E A+ + E+ A CDITD Sbjct: 1 MKIEGQAALVTGGASGLGEATARELARLGAKVAVLDRNAELAEKVTAEIGGIACACDITD 60 Query: 61 SASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSPMPLEDFSRIVNVNLIGTFNV 120 + SV AALD A A+G RIL+N AGIG AKR+VGKDG+P PLEDF R+VN+NLIG +N+ Sbjct: 61 TDSVTAALDKAAAAHGPARILMNVAGIGSAKRIVGKDGNPAPLEDFVRVVNINLIGGYNM 120 Query: 121 IRLTAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITSMTLPLARDLAQ 180 RL AAR A + L GE+GV++ TASVAAFDGQVGQ Y+ASKGG+ MTLP+ARDLAQ Sbjct: 121 ARLFAARCAKLDALDNGEKGVMLFTASVAAFDGQVGQQAYSASKGGLVGMTLPMARDLAQ 180 Query: 181 HGIRVVTIAPGLFLTPLLYKLPEEVQQSLASSIPFPKRLGKAEEYAQLALHIATNLSLNG 240 H IRV T+APGLF TPLL +LPE VQ SLA+SIPFP RLGK E+A+LA HI TN LNG Sbjct: 181 HAIRVCTVAPGLFATPLLLELPEAVQHSLAASIPFPPRLGKPSEFAELACHIVTNGHLNG 240 Query: 241 EVIRLDGALRLAPR 254 EVIRLDGALR+APR Sbjct: 241 EVIRLDGALRMAPR 254