BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5172.p (391 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777384.1| branched-chain amino acid ABC transporter pe... 702 0.0 emb|CAP19688.1| periplasmic component protein [Herbaspirillum se... 697 0.0 ref|YP_298217.1| extracellular ligand-binding receptor [Ralstoni... 578 e-163 ref|YP_586906.1| ABC transporter substrate binding protein [Cupr... 578 e-163 ref|ZP_07676429.1| amino acid ABC transporter, periplasmic amino... 575 e-162 >ref|YP_003777384.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65476.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 391 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 370/391 (94%), Positives = 382/391 (97%) Query: 1 MRFKKIALLALISATNALAAPLAHAQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHG 60 MRFKKIALLA+++A+ L A LA AQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHG Sbjct: 1 MRFKKIALLAVMAASGGLLASLAQAQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHG 60 Query: 61 DTVAGKKIQVIIKDTTGPSPEIAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKK 120 D VAGKKIQ+IIKDTTGPSPEIAKRLAQELVVR+KVDFLAGFGLTPEALAVAPIAEQAKK Sbjct: 61 DQVAGKKIQIIIKDTTGPSPEIAKRLAQELVVREKVDFLAGFGLTPEALAVAPIAEQAKK 120 Query: 121 PMIVMNAASSVITTKSSYIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAET 180 PMI+MNAA+SVITTKS+YIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAET Sbjct: 121 PMIIMNAATSVITTKSNYIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAET 180 Query: 181 AFKTNLLGGGGQVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQGIAFMKGYRE 240 AFKTNLLGGGGQVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQ IAFMKGYRE Sbjct: 181 AFKTNLLGGGGQVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQSIAFMKGYRE 240 Query: 241 RGLAEAGIKVIATGDLTDDHVLPAMGDSTLGVITTFHYSAAHDSPENKAFLKSFAAANPG 300 RGLAEAGIKVIATGDLTDDHV+PAMG+STLGVITTFHYSAAHDSPENKAFLKSFAAANPG Sbjct: 241 RGLAEAGIKVIATGDLTDDHVMPAMGESTLGVITTFHYSAAHDSPENKAFLKSFAAANPG 300 Query: 301 AGRPNFMAVAAYDGMNAIYEVSKKLNGKIDGDRAMAILKAMKFTSPRGPIAIDPATRDIV 360 AGRPNFMAVAAYDGMNAIYEVSKKLNGKIDGDRAMAILK MKFTSPRGPIAIDPATRDIV Sbjct: 301 AGRPNFMAVAAYDGMNAIYEVSKKLNGKIDGDRAMAILKTMKFTSPRGPIAIDPATRDIV 360 Query: 361 QTVYVRKVEKVGNEVYNVEFDKFENMKDTGK 391 QTVYVRKVEK+GNE YNVEFDKFENMKDTGK Sbjct: 361 QTVYVRKVEKIGNEAYNVEFDKFENMKDTGK 391 >emb|CAP19688.1| periplasmic component protein [Herbaspirillum seropedicae] Length = 391 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 369/391 (94%), Positives = 381/391 (97%) Query: 1 MRFKKIALLALISATNALAAPLAHAQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHG 60 MRFKKIALLA+++A+ L A LA AQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHG Sbjct: 1 MRFKKIALLAVMAASGGLLASLAQAQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHG 60 Query: 61 DTVAGKKIQVIIKDTTGPSPEIAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKK 120 D VAGKKIQ+IIKDTTGPSPEIAKRLA ELVVR+KVDFLAGFGLTPEALAVAPIAEQAKK Sbjct: 61 DQVAGKKIQIIIKDTTGPSPEIAKRLAPELVVREKVDFLAGFGLTPEALAVAPIAEQAKK 120 Query: 121 PMIVMNAASSVITTKSSYIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAET 180 PMI+MNAA+SVITTKS+YIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAET Sbjct: 121 PMIIMNAATSVITTKSNYIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAET 180 Query: 181 AFKTNLLGGGGQVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQGIAFMKGYRE 240 AFKTNLLGGGGQVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQ IAFMKGYRE Sbjct: 181 AFKTNLLGGGGQVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQSIAFMKGYRE 240 Query: 241 RGLAEAGIKVIATGDLTDDHVLPAMGDSTLGVITTFHYSAAHDSPENKAFLKSFAAANPG 300 RGLAEAGIKVIATGDLTDDHV+PAMG+STLGVITTFHYSAAHDSPENKAFLKSFAAANPG Sbjct: 241 RGLAEAGIKVIATGDLTDDHVMPAMGESTLGVITTFHYSAAHDSPENKAFLKSFAAANPG 300 Query: 301 AGRPNFMAVAAYDGMNAIYEVSKKLNGKIDGDRAMAILKAMKFTSPRGPIAIDPATRDIV 360 AGRPNFMAVAAYDGMNAIYEVSKKLNGKIDGDRAMAILK MKFTSPRGPIAIDPATRDIV Sbjct: 301 AGRPNFMAVAAYDGMNAIYEVSKKLNGKIDGDRAMAILKTMKFTSPRGPIAIDPATRDIV 360 Query: 361 QTVYVRKVEKVGNEVYNVEFDKFENMKDTGK 391 QTVYVRKVEK+GNE YNVEFDKFENMKDTGK Sbjct: 361 QTVYVRKVEKIGNEAYNVEFDKFENMKDTGK 391 >ref|YP_298217.1| extracellular ligand-binding receptor [Ralstonia eutropha JMP134] gb|AAZ63373.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Ralstonia eutropha JMP134] Length = 391 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 289/365 (79%), Positives = 331/365 (90%) Query: 27 ETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHGDTVAGKKIQVIIKDTTGPSPEIAKRL 86 + IK+GLIA FSG FADYGKQME G+KAY + HGDTVAG+K+QVI+KDTTGP P++AKRL Sbjct: 27 DPIKIGLIAPFSGSFADYGKQMEAGVKAYQSLHGDTVAGRKVQVIMKDTTGPVPDVAKRL 86 Query: 87 AQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKKPMIVMNAASSVITTKSSYIARFSMTL 146 AQELVVRDKVD LAGFGLTPEALAVAP+AEQAKK M++ NAASSVITTKS+YIAR SMTL Sbjct: 87 AQELVVRDKVDILAGFGLTPEALAVAPVAEQAKKAMVIFNAASSVITTKSNYIARVSMTL 146 Query: 147 PQVSGPMATWALKNGIKRVVTLVADYGPGIDAETAFKTNLLGGGGQVLESIRVPLRNPEF 206 PQ+S PMATWA+KN +++VVTLVADY PGIDAETAFKTN +GGGGQ++ESIRVPLRNPEF Sbjct: 147 PQISAPMATWAVKNNVRKVVTLVADYAPGIDAETAFKTNFIGGGGQIIESIRVPLRNPEF 206 Query: 207 APYIQRIKDAKPEAVFIFVPAGEQGIAFMKGYRERGLAEAGIKVIATGDLTDDHVLPAMG 266 AP+IQRIKDAKPEAVF+F+PAGEQG+AFMKG+RERGLAEAGI+VIATGDLTDDHVLPAMG Sbjct: 207 APFIQRIKDAKPEAVFLFLPAGEQGVAFMKGFRERGLAEAGIRVIATGDLTDDHVLPAMG 266 Query: 267 DSTLGVITTFHYSAAHDSPENKAFLKSFAAANPGAGRPNFMAVAAYDGMNAIYEVSKKLN 326 DSTLGVIT+FHYS AHDS ENKAFL +++AANPGAGRPNFM VAAYDGM AIYE KK N Sbjct: 267 DSTLGVITSFHYSMAHDSRENKAFLSAYSAANPGAGRPNFMTVAAYDGMAAIYEALKKTN 326 Query: 327 GKIDGDRAMAILKAMKFTSPRGPIAIDPATRDIVQTVYVRKVEKVGNEVYNVEFDKFENM 386 G DGD+ + LK MK SPRGPI IDPATRD++QTVY+RKVEK G+E+YN+EFDKF ++ Sbjct: 327 GATDGDKIIGALKGMKIMSPRGPIMIDPATRDVIQTVYIRKVEKRGSELYNIEFDKFADV 386 Query: 387 KDTGK 391 KD+GK Sbjct: 387 KDSGK 391 >ref|YP_586906.1| ABC transporter substrate binding protein [Cupriavidus metallidurans CH34] gb|ABF11637.1| putative ABC transporter substrate binding protein [Cupriavidus metallidurans CH34] Length = 393 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 296/380 (77%), Positives = 336/380 (88%), Gaps = 1/380 (0%) Query: 13 SATNALAAPL-AHAQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHGDTVAGKKIQVI 71 SA L PL A + +K+GLIA FSG FADYGKQMEGGIKA+ +GD VAG+KI+VI Sbjct: 14 SAFAVLTYPLLTLAADPVKIGLIAPFSGSFADYGKQMEGGIKAWQKLNGDVVAGRKIEVI 73 Query: 72 IKDTTGPSPEIAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKKPMIVMNAASSV 131 +KDTTGP PE+AKRLAQELVVRDKVD LAGFGLTPEALAVAP+AEQAKKPM++ NAASSV Sbjct: 74 MKDTTGPVPEVAKRLAQELVVRDKVDILAGFGLTPEALAVAPVAEQAKKPMVIFNAASSV 133 Query: 132 ITTKSSYIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAETAFKTNLLGGGG 191 ITTKS+YI R SMTLPQ+S PMATWA++N +++VVTLVADY PGIDAETAFKTN LGGGG Sbjct: 134 ITTKSNYITRVSMTLPQISAPMATWAVRNNVRKVVTLVADYAPGIDAETAFKTNFLGGGG 193 Query: 192 QVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQGIAFMKGYRERGLAEAGIKVI 251 Q++ESIRVPLRNPEFAP+IQRIKDAKPEAVF+F+PAGEQG+AFMKG+RERGLA+AGI+VI Sbjct: 194 QIVESIRVPLRNPEFAPFIQRIKDAKPEAVFLFLPAGEQGVAFMKGFRERGLADAGIRVI 253 Query: 252 ATGDLTDDHVLPAMGDSTLGVITTFHYSAAHDSPENKAFLKSFAAANPGAGRPNFMAVAA 311 ATGDLTDDHVLPAMGD+TLGVIT+FHYSAAHDS ENKAFLK+FA ANPGAGRPNFMAVAA Sbjct: 254 ATGDLTDDHVLPAMGDATLGVITSFHYSAAHDSKENKAFLKAFADANPGAGRPNFMAVAA 313 Query: 312 YDGMNAIYEVSKKLNGKIDGDRAMAILKAMKFTSPRGPIAIDPATRDIVQTVYVRKVEKV 371 YDGM AIY+ KK NG DGD+ + LK MK SPRG I IDPATRD+VQTVY+RKVEKV Sbjct: 314 YDGMAAIYDALKKTNGATDGDKLVGALKGMKLQSPRGAITIDPATRDVVQTVYIRKVEKV 373 Query: 372 GNEVYNVEFDKFENMKDTGK 391 E+YNVEFDKF+ +KD+GK Sbjct: 374 NGELYNVEFDKFDGVKDSGK 393 >ref|ZP_07676429.1| amino acid ABC transporter, periplasmic amino-acid binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP65001.1| amino acid ABC transporter, periplasmic amino-acid binding protein [Ralstonia sp. 5_7_47FAA] Length = 392 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 292/388 (75%), Positives = 337/388 (86%), Gaps = 1/388 (0%) Query: 4 KKIALLALISATNALAAPLAHAQETIKVGLIAAFSGPFADYGKQMEGGIKAYMAQHGDTV 63 ++ LL +++ T P A A E IK+GLIA FSGPFADYGKQME GIKAY HG T Sbjct: 6 RRRVLLTVVAGTLMTGLP-AFADEPIKIGLIAPFSGPFADYGKQMEDGIKAYQRLHGTTA 64 Query: 64 AGKKIQVIIKDTTGPSPEIAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKKPMI 123 G+++Q+I+KDTTGP P++AKRLAQELVVRDKVDFLAGFGLTPEALAVAPIA+QAKKPM+ Sbjct: 65 GGRQVQIIVKDTTGPVPDVAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAQQAKKPMV 124 Query: 124 VMNAASSVITTKSSYIARFSMTLPQVSGPMATWALKNGIKRVVTLVADYGPGIDAETAFK 183 + NAASS ITTKS Y+ R SMTLPQ+S P+A+WALKNGIK+V T+VADY PGIDAE AFK Sbjct: 125 IFNAASSSITTKSDYVTRVSMTLPQISTPIASWALKNGIKQVATVVADYAPGIDAENAFK 184 Query: 184 TNLLGGGGQVLESIRVPLRNPEFAPYIQRIKDAKPEAVFIFVPAGEQGIAFMKGYRERGL 243 GGGQV+E++RVPLRNPEFAP+IQR+KDAKP+AVF+F+PAGEQG+AFMKG+RERGL Sbjct: 185 QTFTAGGGQVVEAVRVPLRNPEFAPFIQRVKDAKPQAVFVFLPAGEQGVAFMKGFRERGL 244 Query: 244 AEAGIKVIATGDLTDDHVLPAMGDSTLGVITTFHYSAAHDSPENKAFLKSFAAANPGAGR 303 A+AGIKVIATGDLTDDHVLPAMGD+TLGVIT+FHYSAAHDSP+NK FLK+FA ANPGAGR Sbjct: 245 AQAGIKVIATGDLTDDHVLPAMGDATLGVITSFHYSAAHDSPQNKTFLKAFAEANPGAGR 304 Query: 304 PNFMAVAAYDGMNAIYEVSKKLNGKIDGDRAMAILKAMKFTSPRGPIAIDPATRDIVQTV 363 PNFMAVAAYDG+ AIY V KL GKIDG++AMA K MK SPRGPI IDPATRD+VQTV Sbjct: 305 PNFMAVAAYDGIGAIYNVINKLGGKIDGEKAMAAFKGMKIDSPRGPITIDPATRDVVQTV 364 Query: 364 YVRKVEKVGNEVYNVEFDKFENMKDTGK 391 Y+RKVEKVGNE+YNVEFDKF ++KD GK Sbjct: 365 YIRKVEKVGNELYNVEFDKFADVKDPGK 392