BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5169.p (373 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777383.1| porin transmembrane protein [Herbaspirillum ... 544 e-152 ref|YP_001859402.1| outer membrane protein (porin) [Burkholderia... 326 5e-87 ref|YP_728889.1| outer membrane protein (porin) [Ralstonia eutro... 313 4e-83 ref|YP_004680879.1| outer membrane protein [Cupriavidus necator ... 307 2e-81 ref|YP_002230293.1| putative outer membrane porin [Burkholderia ... 306 4e-81 >ref|YP_003777383.1| porin transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65475.1| porin transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 316/342 (92%), Positives = 333/342 (97%) Query: 32 QSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGFRGTEDLGGGLQALFVLE 91 QSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGF+GTEDLGGGLQA+FVLE Sbjct: 24 QSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGFKGTEDLGGGLQAMFVLE 83 Query: 92 SGFAPDTGAMGQGGRLFGRQSYVGLKSGWGQIMLGRQLNMTYISQLKTDVMGPNIFAIGS 151 SGFAPDTGAMGQGGRLFGRQSYVGLK+ WGQ+MLGRQ+NMTY+SQLKTDVMGPN+FAIGS Sbjct: 84 SGFAPDTGAMGQGGRLFGRQSYVGLKNSWGQLMLGRQVNMTYLSQLKTDVMGPNLFAIGS 143 Query: 152 IDPYLPNARSDNAIGYLGNFSGFTVGATYSFGRDAAGPAGPAATNCAGEVAGNSKACRQV 211 ID YLPNARSDNAIGYLGNFSGFTVGATYSFGRDAAGPAGPAATNC GEVAGNSKACRQV Sbjct: 144 IDAYLPNARSDNAIGYLGNFSGFTVGATYSFGRDAAGPAGPAATNCPGEVAGNSKACRQV 203 Query: 212 TGLLGYDGKGWGFTSSYDILYGNTGASNGLTSSDNSDQRITLNGYYMIGDVKIGAGVVDR 271 T LLGYDGKGWG TSSYDILYGNTGASNG+TSSDN+DQR+TLNGY+M+GDVKIG GVVDR Sbjct: 204 TALLGYDGKGWGVTSSYDILYGNTGASNGMTSSDNTDQRVTLNGYFMLGDVKIGGGVVDR 263 Query: 272 RTRAAANTNTDSDLYYLGVSYPLTTTLVLDAQVSRLDVKNSPNDVTLSVARLTYNLSKRT 331 RTRAAANTNTDSDLYYLGVSYPL+ LVLDAQVSRLDVKNSPNDVTLSVARLTYNLSKRT Sbjct: 264 RTRAAANTNTDSDLYYLGVSYPLSVALVLDAQVSRLDVKNSPNDVTLSVARLTYNLSKRT 323 Query: 332 ALYTSLGYIKNGGTSAVAIDAGGTVGAGKNQLGVMSGIRHTF 373 A+Y SLGYIKNGGTS+VA+DAGGTVGAGKNQLGVM+GIRHTF Sbjct: 324 AVYGSLGYIKNGGTSSVALDAGGTVGAGKNQLGVMTGIRHTF 365 >ref|YP_001859402.1| outer membrane protein (porin) [Burkholderia phymatum STM815] gb|ACC72356.1| outer membrane protein (porin) [Burkholderia phymatum STM815] Length = 361 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 194/366 (53%), Positives = 264/366 (72%), Gaps = 7/366 (1%) Query: 8 TLRAVALAAAACAMTAGAAGSAMAQSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGS 67 T+R+++L +++A AGSA AQS+VT+YGI+DTGV Y NA A+G SV MPSL+G Sbjct: 3 TIRSLSL----ISVSALVAGSACAQSNVTLYGIVDTGVQYYNNATASGGSVVGMPSLSGK 58 Query: 68 FPSRIGFRGTEDLGGGLQALFVLESGFAPDTGAMGQGGRLFGRQSYVGLKSGWGQIMLGR 127 PSR G RG EDLGGG +A FVLE+GFA + GA+G GGR+FGR + VG+ S +G + LGR Sbjct: 59 LPSRFGLRGVEDLGGGYKAFFVLENGFAVNNGALGYGGRIFGRAANVGIDSRFGTLTLGR 118 Query: 128 QLNMTYISQLKTDVMGPNIFAIGSIDPYLPNARSDNAIGYLGNFSGFTVGATYSFGRDAA 187 Q+NMT + DV+GP+ ++ D YLPNARSDNA+GY+G + GFT+GATYSFGRDAA Sbjct: 119 QMNMTLYALTDADVIGPSNHSLAVFDTYLPNARSDNAVGYMGKWHGFTIGATYSFGRDAA 178 Query: 188 GPAGPAATNCAGEVAGNSKACRQVTGLLGYDGKGWGFTSSYDILYGNTGASNGLTSSDNS 247 GPAGP+ATNCAG+V G+ ACRQ T +L Y + G T+SYD++ G TGAS L+SS N+ Sbjct: 179 GPAGPSATNCAGQVPGDFVACRQYTVMLAYASETLGVTASYDVMRGGTGASAPLSSSANT 238 Query: 248 DQRITLNGYYMIGDVKIGAGVVDRRTRAAANTNTDSDLYYLGVSYPLTTTLVLDAQVSRL 307 D R ++GY G++K+GAG + R T ++ T++ SD+++ G +Y LT +DAQ R Sbjct: 239 DTRTIVDGYAKYGNLKLGAGWIRRNT--SSTTHSQSDIFFAGGTYLLTPAFAVDAQAVRY 296 Query: 308 DVKNSPNDVTLSVARLTYNLSKRTALYTSLGYIKNGGTSAVAIDAGGTVGAGKNQLGVMS 367 ++ + +D TL V R++Y LSKRT++Y+S GY+ N TSAV + AGGTVG GKNQ+G M Sbjct: 297 ILR-TRSDATLFVGRVSYFLSKRTSIYSSAGYMINSPTSAVPVSAGGTVGIGKNQVGFMV 355 Query: 368 GIRHTF 373 G++ F Sbjct: 356 GMQQRF 361 >ref|YP_728889.1| outer membrane protein (porin) [Ralstonia eutropha H16] emb|CAJ95524.1| outer membrane protein (porin) [Ralstonia eutropha H16] Length = 364 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 184/351 (52%), Positives = 241/351 (68%), Gaps = 10/351 (2%) Query: 29 AMAQSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGFRGTEDLGGGLQALF 88 A AQSSVT+YG+IDTGV Y +N ANG+ + +MP+LT + PSR G RGTEDLGGGL+++F Sbjct: 18 ASAQSSVTLYGVIDTGVEYVSNVGANGDGLVRMPNLTATVPSRWGIRGTEDLGGGLKSIF 77 Query: 89 VLESGFAPDTGAMGQGGRLFGRQSYVGLKSGWGQIMLGRQLNMTYISQLKTDVMGPNIFA 148 VLESGF+PD+G QGGRLFGRQ+ VGL + +GQ+ GRQ M + + L +DV+GPN++ Sbjct: 78 VLESGFSPDSGTSNQGGRLFGRQALVGLSNQYGQLSFGRQYTMLFWATLDSDVLGPNVYG 137 Query: 149 IGSIDPYLPNARSDNAIGYLGNFSGFTVGATYSFGRDA--AGPAGPAATNCAGEVAGNSK 206 GS+D YLPN R+DNA+ Y NFSGF VGATYSFGRDA AGP+ P+ TNCAGE A + K Sbjct: 138 SGSLDSYLPNTRADNAVSYKANFSGFVVGATYSFGRDAVNAGPS-PSGTNCAGENATDKK 196 Query: 207 ACRQVTGLLGYDGKGWGFTSSYDILYGNTGASNGLTSSDNSDQRITLNGYYMIGDVKIGA 266 ACRQ + +LGYD K WG T++YD G GA GLT+S+ +D R++L GY + KIGA Sbjct: 197 ACRQWSAMLGYDNKTWGVTAAYDSQRGGPGAFGGLTNSNLTDDRLSLGGYMLFQRTKIGA 256 Query: 267 GVVDRRTRAAANTNTDSDLYYLGVSYPLTTTLVLDAQVSRLDVKNSPNDVTLSVARLTYN 326 G + R + SDLYY G SY +T + L QV L+ S N L R Y+ Sbjct: 257 GWIRRDNEGSP--TPISDLYYAGASYDITPAVNLAGQVYFLNYHGSDNQAMLYTLRAMYS 314 Query: 327 LSKRTALYTSLGYIKNGGTSAVAIDAGGTVGA----GKNQLGVMSGIRHTF 373 SKRT++Y + G+I NGG A+++ +GG+ G+ G+NQ G M GI+H F Sbjct: 315 FSKRTSVYATAGFINNGGQLAMSV-SGGSPGSNPRPGENQWGSMIGIKHVF 364 >ref|YP_004680879.1| outer membrane protein [Cupriavidus necator N-1] gb|AEI79647.1| outer membrane protein [Cupriavidus necator N-1] Length = 364 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 182/348 (52%), Positives = 240/348 (68%), Gaps = 10/348 (2%) Query: 32 QSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGFRGTEDLGGGLQALFVLE 91 QSSVT+YG+IDTGV Y +N ANGN + +MP+LT + PSR G RGTEDLGGGL+++FVLE Sbjct: 21 QSSVTLYGVIDTGVEYVSNVGANGNGLVRMPNLTATVPSRWGIRGTEDLGGGLKSIFVLE 80 Query: 92 SGFAPDTGAMGQGGRLFGRQSYVGLKSGWGQIMLGRQLNMTYISQLKTDVMGPNIFAIGS 151 SGF+PD+G QGGRLFGRQ+ VGL + +G + GRQ M + + L +DV+GPN++ GS Sbjct: 81 SGFSPDSGTSNQGGRLFGRQALVGLTNQYGTLSFGRQYTMLFWATLDSDVLGPNVYGSGS 140 Query: 152 IDPYLPNARSDNAIGYLGNFSGFTVGATYSFGRDA--AGPAGPAATNCAGEVAGNSKACR 209 +D YLPN R+DNA+ Y NF+GF VGATYSFGRDA AGP+ P+ TNCAGE A + KACR Sbjct: 141 LDSYLPNTRADNAVSYKANFNGFVVGATYSFGRDAVNAGPS-PSGTNCAGENAADKKACR 199 Query: 210 QVTGLLGYDGKGWGFTSSYDILYGNTGASNGLTSSDNSDQRITLNGYYMIGDVKIGAGVV 269 + + +LGYD K WG T++YD G GA GLT+S+ +D R++L GY + KIGAG + Sbjct: 200 EWSAMLGYDNKTWGVTAAYDSQRGGPGAFGGLTNSNLTDDRLSLGGYMLFQRAKIGAGWI 259 Query: 270 DRRTRAAANTNTDSDLYYLGVSYPLTTTLVLDAQVSRLDVKNSPNDVTLSVARLTYNLSK 329 RR + T SDLYY G SY +T + L QV L+ S N L R Y+ SK Sbjct: 260 -RRDNEGSRTPI-SDLYYAGASYDITPAVNLAGQVYFLNYHGSDNQAMLYTLRAMYSFSK 317 Query: 330 RTALYTSLGYIKNGGTSAVAIDAGGTVGA----GKNQLGVMSGIRHTF 373 RT++Y + G+I NGG A+++ +GG+ G+ G+NQ G M GI+H F Sbjct: 318 RTSVYATAGFINNGGQLAMSV-SGGSPGSNPRPGENQWGSMIGIKHVF 364 >ref|YP_002230293.1| putative outer membrane porin [Burkholderia cenocepacia J2315] emb|CAR51454.1| putative outer membrane porin [Burkholderia cenocepacia J2315] Length = 364 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 193/361 (53%), Positives = 235/361 (65%), Gaps = 7/361 (1%) Query: 18 ACAMTAGAAGSAMAQSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGFRGT 77 + A A+G A QSSVT+YGI+DTGV Y +A A+G S MP LTG PSR GFRG Sbjct: 6 SAAGLVAASGLAYGQSSVTLYGIVDTGVSYYNHATAHGGSWVGMPVLTGELPSRFGFRGR 65 Query: 78 EDLGGGLQALFVLESGFAPDTGAMGQGGRLFGRQSYVGLKSGWGQIMLGRQLNMTYISQL 137 EDLGGG A FVLESGF P TGA+ GGRLFGRQ+ VG+ S G + LGRQ+NMT + Sbjct: 66 EDLGGGYHAFFVLESGFQPGTGALNYGGRLFGRQANVGVGSDDGALTLGRQMNMTTYALA 125 Query: 138 KTDVMGPNIFAIGSIDPYLPNARSDNAIGYLGNFSGFTVGATYSFGRDAAGPAGPAATNC 197 K DV+GP+I ++ D YLPNARSDNAIGYLG F G TVGATYSFGRDAAGPAGP ATNC Sbjct: 126 KADVIGPSIHSLYVFDGYLPNARSDNAIGYLGRFRGITVGATYSFGRDAAGPAGPGATNC 185 Query: 198 AGEVAGNSKACRQVTGLLGYDGKGWGFTSSYDILYGNTGASNGLTSSDNSDQRITLNGYY 257 AG+V G+ ACRQ T L+ YD +G +SYD++ G TGAS L + + R ++GY Sbjct: 186 AGQVPGDILACRQYTALVAYDTASFGVAASYDVMRGGTGASAPLNRNAYTATRNIVDGYL 245 Query: 258 MIGDVKIGAGVVDRRTRAAANTNTDSDLYYLGVSYPLTTTLVLDAQVSRL-----DVKNS 312 + G VK+G G + R AA T+ SD+++ G +Y T L +DAQ R D Sbjct: 246 VTGPVKVGIGWI--RNNMAAATHLQSDIFFAGATYSSTPALSIDAQGVRYLQRGRDEGAH 303 Query: 313 PNDVTLSVARLTYNLSKRTALYTSLGYIKNGGTSAVAIDAGGTVGAGKNQLGVMSGIRHT 372 TL VAR Y LSKRT YTSLGY+ N + ++ AGGTVG G NQLG M G++ Sbjct: 304 SAQSTLLVARANYALSKRTIAYTSLGYMFNSKLAENSVAAGGTVGTGMNQLGAMVGLQQK 363 Query: 373 F 373 F Sbjct: 364 F 364