BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5168.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777382.1| IclR family transcription regulator protein ... 438 e-121 ref|XP_002536664.1| Pca regulon regulatory protein, putative [Ri... 329 3e-88 gb|AAT50997.1| PA0155 [synthetic construct] 266 3e-69 ref|NP_248845.1| transcriptional regulator PcaR [Pseudomonas aer... 266 4e-69 ref|YP_788313.1| transcriptional regulator PcaR [Pseudomonas aer... 263 3e-68 >ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65474.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 252/260 (96%), Positives = 258/260 (99%) Query: 54 LTIAEEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 113 +TIA+EIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK Sbjct: 1 MTIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 60 Query: 114 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEV 173 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDD+EV Sbjct: 61 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV 120 Query: 174 LYVARSATSRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKLRALTDKTVV 233 LYVARSA SRVMSVALNTGSRLPAYCTSLGRAMLAHLP+DQLKAYF+KVKLRALT+KTVV Sbjct: 121 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV 180 Query: 234 SQKRLRDILAGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 293 SQKRLRDILAGVRA GYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM Sbjct: 181 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 240 Query: 294 EEEILPVLLRGAQELSVLLP 313 EEEILPVLLRGAQELSVLLP Sbjct: 241 EEEILPVLLRGAQELSVLLP 260 >ref|XP_002536664.1| Pca regulon regulatory protein, putative [Ricinus communis] gb|EEF25717.1| Pca regulon regulatory protein, putative [Ricinus communis] Length = 271 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 193/268 (72%), Positives = 227/268 (84%), Gaps = 2/268 (0%) Query: 46 SAPEAERELTIAEEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAV 105 + P A R TIAEEIDAL DP FMTSLARGLAV+RAF+D+R+ TIAQISQ+TGIPRAAV Sbjct: 6 ATPAAPR--TIAEEIDALADPDFMTSLARGLAVLRAFADTRKPQTIAQISQQTGIPRAAV 63 Query: 106 RRCLHTLKQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSL 165 RRCLHTL+QLGY D+++NNFSLRPK+LTLGYSYLSSTPLT +AQP LN +S+ LGES SL Sbjct: 64 RRCLHTLRQLGYVDAELNNFSLRPKVLTLGYSYLSSTPLTAAAQPCLNGVSKALGESSSL 123 Query: 166 AVLDDNEVLYVARSATSRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKLR 225 AVL++++VLYVAR+ATSRVMSV+L GSRLPAYC+SLGR +LAHLP D+L AY + L Sbjct: 124 AVLEEDQVLYVARAATSRVMSVSLAAGSRLPAYCSSLGRVLLAHLPQDELDAYLARTTLT 183 Query: 226 ALTDKTVVSQKRLRDILAGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQA 285 +T++TV RLRDILA VR GYAV +EELE+GLRSIAVPVRGASG VLAALNVGA A Sbjct: 184 PMTERTVTDPARLRDILAQVRRDGYAVNNEELELGLRSIAVPVRGASGRVLAALNVGAHA 243 Query: 286 ARVSVAQMEEEILPVLLRGAQELSVLLP 313 ARV+ +M EE LPVL +GAQEL++LLP Sbjct: 244 ARVTPERMVEEFLPVLRQGAQELAMLLP 271 >gb|AAT50997.1| PA0155 [synthetic construct] Length = 280 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 160/274 (58%), Positives = 206/274 (75%), Gaps = 4/274 (1%) Query: 41 QEPAASAPEAERELTIAEEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTG 99 + PA AP L+ AE I+A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T Sbjct: 6 EHPATLAPPTV--LSPAERIEAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTE 63 Query: 100 IPRAAVRRCLHTLKQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTL 159 IPRAAVRRCLHTL QLGYA +D +SL PK+LTLG++YLSSTPL ++AQP L+ +S L Sbjct: 64 IPRAAVRRCLHTLMQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQL 123 Query: 160 GESCSLAVLDDNEVLYVARSAT-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAY 218 E+CS+A L+ ++VLY+ARSAT R++SV LN GSRLPAYCTS+GR +LA L DD L AY Sbjct: 124 HEACSMATLEGDDVLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAY 183 Query: 219 FEKVKLRALTDKTVVSQKRLRDILAGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAA 278 F V+++A T +T+ + + L L +R QG+ +D+ELEVGLRS+AVPVR ++G+VLAA Sbjct: 184 FGGVEMQAKTSRTLYTPETLLPCLVEIRRQGWCNVDQELEVGLRSLAVPVRDSAGHVLAA 243 Query: 279 LNVGAQAARVSVAQMEEEILPVLLRGAQELSVLL 312 LNVG A RVS A++E LP+LL ++ELS L Sbjct: 244 LNVGTHAGRVSRAELESRFLPLLLEASRELSARL 277 >ref|NP_248845.1| transcriptional regulator PcaR [Pseudomonas aeruginosa PAO1] ref|ZP_01363064.1| hypothetical protein PaerPA_01000155 [Pseudomonas aeruginosa PACS2] ref|YP_002437764.1| transcriptional regulator PcaR [Pseudomonas aeruginosa LESB58] ref|ZP_04930929.1| transcriptional regulator PcaR [Pseudomonas aeruginosa C3719] ref|ZP_04936583.1| transcriptional regulator PcaR [Pseudomonas aeruginosa 2192] ref|ZP_06876142.1| transcriptional regulator PcaR [Pseudomonas aeruginosa PAb1] ref|ZP_07798044.1| transcriptional regulator PcaR [Pseudomonas aeruginosa 39016] gb|AAG03545.1|AE004453_8 transcriptional regulator PcaR [Pseudomonas aeruginosa PAO1] gb|EAZ55048.1| transcriptional regulator PcaR [Pseudomonas aeruginosa C3719] gb|EAZ60702.1| transcriptional regulator PcaR [Pseudomonas aeruginosa 2192] emb|CAW24883.1| transcriptional regulator PcaR [Pseudomonas aeruginosa LESB58] gb|EFQ43140.1| transcriptional regulator PcaR [Pseudomonas aeruginosa 39016] gb|EGM14273.1| transcriptional regulator PcaR [Pseudomonas aeruginosa 152504] gb|EGM18114.1| transcriptional regulator PcaR [Pseudomonas aeruginosa 138244] dbj|GAA19790.1| transcriptional regulator PcaR [Pseudomonas aeruginosa NCMG1179] gb|AEO72645.1| transcriptional regulator PcaR [Pseudomonas aeruginosa M18] dbj|BAK87055.1| transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 279 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 159/274 (58%), Positives = 207/274 (75%), Gaps = 4/274 (1%) Query: 41 QEPAASAPEAERELTIAEEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTG 99 + PA AP L+ A+ I+A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T Sbjct: 6 EHPATLAPPTV--LSPAKRIEAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTE 63 Query: 100 IPRAAVRRCLHTLKQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTL 159 IPRAAVRRCLHTL QLGYA +D +SL PK+LTLG++YLSSTPL ++AQP L+ +S L Sbjct: 64 IPRAAVRRCLHTLMQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQL 123 Query: 160 GESCSLAVLDDNEVLYVARSAT-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAY 218 E+CS+A L+ ++VLY+ARSAT R++SV LN GSRLPAYCTS+GR +LA L DD L AY Sbjct: 124 HEACSMATLEGDDVLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAY 183 Query: 219 FEKVKLRALTDKTVVSQKRLRDILAGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAA 278 F V+++A T +T+ + + L L +R QG+ ++D+ELEVGLRS+AVPVR ++G+VLAA Sbjct: 184 FGGVEMQAKTSRTLYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAA 243 Query: 279 LNVGAQAARVSVAQMEEEILPVLLRGAQELSVLL 312 LNVG A RVS A++E LP+LL ++ELS L Sbjct: 244 LNVGTHAGRVSRAELESRFLPLLLEASRELSARL 277 >ref|YP_788313.1| transcriptional regulator PcaR [Pseudomonas aeruginosa UCBPP-PA14] gb|ABJ15112.1| transcriptional regulator PcaR [Pseudomonas aeruginosa UCBPP-PA14] Length = 279 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 155/261 (59%), Positives = 201/261 (77%), Gaps = 2/261 (0%) Query: 54 LTIAEEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTL 112 L+ A+ I A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T IPRAAVRRCLHTL Sbjct: 17 LSPAKRIKAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTL 76 Query: 113 KQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNE 172 QLGYA +D +SL PK+LTLG++YLSSTPL ++AQP L+ +S L E+CS+A L+ ++ Sbjct: 77 MQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDD 136 Query: 173 VLYVARSAT-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKLRALTDKT 231 VLY+ARSAT R++SV LN GSRLPAYCTS+GR +LA L DD L AYF V+++A T +T Sbjct: 137 VLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRT 196 Query: 232 VVSQKRLRDILAGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVA 291 + + + L L +R QG+ ++D+ELEVGLRS+AVPVR ++G+VLAALNVG A RVS A Sbjct: 197 LYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRA 256 Query: 292 QMEEEILPVLLRGAQELSVLL 312 ++E LP+LL ++ELS L Sbjct: 257 ELESRFLPLLLEASRELSARL 277