BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5166.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777380.1| 3-oxoadipate CoA-transferase subunit B [Herb... 409 e-112 gb|AEG68477.1| 3-oxoadipate CoA-transferase subunit B [Ralstonia... 345 3e-93 ref|ZP_00943598.1| 3-oxoadipate CoA-transferase subunit B [Ralst... 342 2e-92 ref|YP_003745068.1| 3-oxoadipate CoA-transferase subunit B [Rals... 341 5e-92 ref|ZP_03697429.1| 3-oxoacid CoA-transferase, B subunit [Lutiell... 341 5e-92 >ref|YP_003777380.1| 3-oxoadipate CoA-transferase subunit B [Herbaspirillum seropedicae SmR1] gb|ADJ65472.1| 3-oxoadipate CoA-transferase subunit B protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 206/213 (96%), Positives = 210/213 (98%) Query: 1 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP Sbjct: 1 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60 Query: 61 GEEDEDLINAGKQPVTLLTGGSYFDHADSFSMMRGGHLDICVLGAFQVSAKGDLANWHTG 120 GEEDEDLINAGKQPVTLLTGG+YF HADSF+MMRGGHLDICVLGAFQVSAKGDLANWHTG Sbjct: 61 GEEDEDLINAGKQPVTLLTGGAYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTG 120 Query: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI 180 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI Sbjct: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI 180 Query: 181 DVTPQGLQVREIVEGLSFAQLQELTGAPLRPAA 213 DVTP GLQVREIVEGLSF +LQ+LTGAPLRPAA Sbjct: 181 DVTPHGLQVREIVEGLSFDELQKLTGAPLRPAA 213 >gb|AEG68477.1| 3-oxoadipate CoA-transferase subunit B [Ralstonia solanacearum Po82] Length = 444 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 170/212 (80%), Positives = 188/212 (88%) Query: 1 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60 ++R+TR++IAARVA+DIPEG+ VNLGIGLPT VAN LPAD+EI LHSENG+LGMGPAPAP Sbjct: 233 IRRWTRDQIAARVARDIPEGSVVNLGIGLPTLVANQLPADREILLHSENGLLGMGPAPAP 292 Query: 61 GEEDEDLINAGKQPVTLLTGGSYFDHADSFSMMRGGHLDICVLGAFQVSAKGDLANWHTG 120 GEED DLINAGKQPVT+ GG+YF HADSF+MMRGGHLD CVLGAFQVSA GDLANWHTG Sbjct: 293 GEEDPDLINAGKQPVTIRPGGAYFHHADSFAMMRGGHLDYCVLGAFQVSATGDLANWHTG 352 Query: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI 180 APDAIPAVGGAMDLAIGAKQVFVMM+HQTK G+SK+V C+YPLTGIGCV+ IYTDLAVI Sbjct: 353 APDAIPAVGGAMDLAIGAKQVFVMMEHQTKQGDSKIVPTCTYPLTGIGCVDTIYTDLAVI 412 Query: 181 DVTPQGLQVREIVEGLSFAQLQELTGAPLRPA 212 DVTP GL VRE+ EGL F LQ LT PLR A Sbjct: 413 DVTPDGLIVREMAEGLDFDTLQTLTAVPLRRA 444 >ref|ZP_00943598.1| 3-oxoadipate CoA-transferase subunit B [Ralstonia solanacearum UW551] ref|YP_002260249.1| 3-oxoadipate coa-transferase subunit b protein [Ralstonia solanacearum IPO1609] gb|EAP74005.1| 3-oxoadipate CoA-transferase subunit B [Ralstonia solanacearum UW551] emb|CAQ62184.1| 3-oxoadipate coa-transferase subunit b protein [Ralstonia solanacearum IPO1609] Length = 220 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 170/212 (80%), Positives = 188/212 (88%) Query: 1 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60 ++R+TR++IAARVA+DIPEG+ VNLGIGLPT VAN LPAD+EI LHSENG+LGMGPAPAP Sbjct: 9 IRRWTRDQIAARVARDIPEGSVVNLGIGLPTLVANQLPADREILLHSENGLLGMGPAPAP 68 Query: 61 GEEDEDLINAGKQPVTLLTGGSYFDHADSFSMMRGGHLDICVLGAFQVSAKGDLANWHTG 120 GEED DLINAGKQPVT+ GG+YF HADSF+MMRGGHLD CVLGAFQVSA GDLANWHTG Sbjct: 69 GEEDPDLINAGKQPVTIRPGGAYFHHADSFAMMRGGHLDYCVLGAFQVSATGDLANWHTG 128 Query: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI 180 APDAIPAVGGAMDLAIGAKQVFVMM+HQTK G+SK+V C+YPLTGIGCV+ IYTDLAVI Sbjct: 129 APDAIPAVGGAMDLAIGAKQVFVMMEHQTKQGDSKIVPTCTYPLTGIGCVDTIYTDLAVI 188 Query: 181 DVTPQGLQVREIVEGLSFAQLQELTGAPLRPA 212 DVTP GL VRE+ EGL F LQ LT PLR A Sbjct: 189 DVTPDGLVVREMAEGLDFDTLQTLTAVPLRRA 220 >ref|YP_003745068.1| 3-oxoadipate CoA-transferase subunit B [Ralstonia solanacearum CFBP2957] emb|CBJ42441.1| 3-oxoadipate CoA-transferase subunit B [Ralstonia solanacearum CFBP2957] Length = 220 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 169/212 (79%), Positives = 187/212 (88%) Query: 1 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60 ++R+TR++IA RVA+DIPEG+ VNLGIGLPT VAN LPAD+EI LHSENG+LGMGPAPAP Sbjct: 9 IRRWTRDQIAERVARDIPEGSVVNLGIGLPTLVANQLPADREILLHSENGLLGMGPAPAP 68 Query: 61 GEEDEDLINAGKQPVTLLTGGSYFDHADSFSMMRGGHLDICVLGAFQVSAKGDLANWHTG 120 GEED DLINAGKQPVT+ GG+YF HADSF+MMRGGHLD CVLGAFQVSA GDLANWHTG Sbjct: 69 GEEDPDLINAGKQPVTIRPGGAYFHHADSFAMMRGGHLDYCVLGAFQVSATGDLANWHTG 128 Query: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI 180 APDAIPAVGGAMDLAIGAKQVFVMM+HQTK G+SK+V C+YPLTGIGCV+ IYTDLAVI Sbjct: 129 APDAIPAVGGAMDLAIGAKQVFVMMEHQTKQGDSKIVPTCTYPLTGIGCVDTIYTDLAVI 188 Query: 181 DVTPQGLQVREIVEGLSFAQLQELTGAPLRPA 212 DVTP GL VRE+ EGL F LQ LT PLR A Sbjct: 189 DVTPDGLVVREMAEGLDFDTLQTLTAVPLRRA 220 >ref|ZP_03697429.1| 3-oxoacid CoA-transferase, B subunit [Lutiella nitroferrum 2002] ref|YP_004847727.1| 3-oxoacid CoA-transferase subunit B [Pseudogulbenkiania sp. NH8B] gb|EEG09915.1| 3-oxoacid CoA-transferase, B subunit [Lutiella nitroferrum 2002] dbj|BAK77313.1| 3-oxoacid CoA-transferase, B subunit [Pseudogulbenkiania sp. NH8B] Length = 218 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 168/213 (78%), Positives = 190/213 (89%) Query: 1 MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60 M + TR+++A RVA+DIPEG+YVNLGIGLPTKVANYLP ++EIFLHSENG+LGMG AP P Sbjct: 1 MNKLTRDQMAERVARDIPEGSYVNLGIGLPTKVANYLPKEREIFLHSENGLLGMGEAPEP 60 Query: 61 GEEDEDLINAGKQPVTLLTGGSYFDHADSFSMMRGGHLDICVLGAFQVSAKGDLANWHTG 120 GEED +LINAGK+PVTLL GGS+F H DSF+MMRGGHLDICVLGAFQVSA GDLANWHTG Sbjct: 61 GEEDPELINAGKEPVTLLEGGSFFHHGDSFAMMRGGHLDICVLGAFQVSASGDLANWHTG 120 Query: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI 180 AP AIPAVGGAMDLA+GAKQVFVMMD TKTGESKLVEACSYPLTG+GCV+RIYTD+AVI Sbjct: 121 APGAIPAVGGAMDLAVGAKQVFVMMDLLTKTGESKLVEACSYPLTGVGCVDRIYTDVAVI 180 Query: 181 DVTPQGLQVREIVEGLSFAQLQELTGAPLRPAA 213 DVTP GL VRE+VEG SF +LQ + PL+ A+ Sbjct: 181 DVTPDGLVVRELVEGNSFDELQRIVPVPLKMAS 213