BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5164.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777378.1| branched-chain amino acid ABC transporter pe... 416 e-114 ref|YP_001900019.1| inner-membrane translocator [Ralstonia picke... 333 1e-89 ref|YP_002982011.1| inner-membrane translocator [Ralstonia picke... 332 4e-89 ref|ZP_00943592.1| LivH [Ralstonia solanacearum UW551] >gi|20774... 320 2e-85 ref|YP_003751829.1| transmembrane abc transporter protein [Ralst... 318 9e-85 >ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65470.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 284/288 (98%), Positives = 287/288 (99%) Query: 1 MLGNFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGV 60 MLGNFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLN +GV Sbjct: 1 MLGNFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGV 60 Query: 61 PFLATLPLAFIAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQ 120 PFLATLPLAFIAAAIVGL+LERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQ Sbjct: 61 PFLATLPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQ 120 Query: 121 PVVLPDWLRGQISLLGLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA 180 PVVLPDWLRGQISLLGL+VGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA Sbjct: 121 PVVLPDWLRGQISLLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA 180 Query: 181 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK 240 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK Sbjct: 181 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK 240 Query: 241 GPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 GPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG Sbjct: 241 GPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 >ref|YP_001900019.1| inner-membrane translocator [Ralstonia pickettii 12J] ref|ZP_07676425.1| inner-membrane translocator [Ralstonia sp. 5_7_47FAA] gb|ACD27587.1| inner-membrane translocator [Ralstonia pickettii 12J] gb|EFP64997.1| inner-membrane translocator [Ralstonia sp. 5_7_47FAA] Length = 289 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 225/285 (78%), Positives = 255/285 (89%), Gaps = 2/285 (0%) Query: 6 LGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGVPFLAT 65 LGVLFDG+AYGSLLFLIS+GLSVTMG+MNFINLAHGAFAM GGYVCV L+NR+GVPFLAT Sbjct: 5 LGVLFDGLAYGSLLFLISIGLSVTMGLMNFINLAHGAFAMAGGYVCVVLMNRLGVPFLAT 64 Query: 66 LPLAFIAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLP 125 LP+AF+ AI+G +LE +LYRRLY+AS LDQVLFSI L FMA+AGAT+ WGP+QQPV LP Sbjct: 65 LPIAFVVTAIIGFVLECTLYRRLYRASPLDQVLFSIALVFMAMAGATYVWGPSQQPVELP 124 Query: 126 DWLRGQISLL--GLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGL 183 + LRGQ + GL+VG YR+FLIGVV+ +T L LIERTRFGAQ+RASVDNQ A+AGL Sbjct: 125 EMLRGQWPVFDSGLEVGRYRLFLIGVVIALTALLAWLIERTRFGAQVRASVDNQQASAGL 184 Query: 184 GINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPL 243 GINVS VFS+TFALGSGLAGLGGGLGIDVLGLDP FP+KYMVYFLLVVAVGGAG+IKG L Sbjct: 185 GINVSLVFSVTFALGSGLAGLGGGLGIDVLGLDPAFPIKYMVYFLLVVAVGGAGSIKGTL 244 Query: 244 LAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 LAAL+LGVFDVAGKYYVP++GAFVIYGLMVVLL+LFP GL+ RR Sbjct: 245 LAALVLGVFDVAGKYYVPDVGAFVIYGLMVVLLVLFPGGLLGRRA 289 >ref|YP_002982011.1| inner-membrane translocator [Ralstonia pickettii 12D] gb|ACS63339.1| inner-membrane translocator [Ralstonia pickettii 12D] Length = 289 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 224/285 (78%), Positives = 255/285 (89%), Gaps = 2/285 (0%) Query: 6 LGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGVPFLAT 65 LGVLFDG+AYGSLLFLIS+GLSVTMG+MNFINLAHGAFAM GGYVCV L+NR+GVPFLAT Sbjct: 5 LGVLFDGLAYGSLLFLISIGLSVTMGLMNFINLAHGAFAMAGGYVCVVLMNRLGVPFLAT 64 Query: 66 LPLAFIAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLP 125 LP+AF+ AI+G +LE +LYRRLY+AS LDQVLFSI L F+A+AGAT+ WGP+QQPV LP Sbjct: 65 LPIAFVVTAIIGFVLECTLYRRLYRASPLDQVLFSIALVFVAMAGATYVWGPSQQPVELP 124 Query: 126 DWLRGQISLL--GLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGL 183 + LRGQ + GL+VG YR+FLIGVV+ +T L LIERTRFGAQ+RASVDNQ A+AGL Sbjct: 125 EMLRGQWRVFDSGLEVGRYRLFLIGVVIALTALLAWLIERTRFGAQVRASVDNQQASAGL 184 Query: 184 GINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPL 243 GINVS VFS+TFALGSGLAGLGGGLGIDVLGLDP FP+KYMVYFLLVVAVGGAG+IKG L Sbjct: 185 GINVSLVFSVTFALGSGLAGLGGGLGIDVLGLDPAFPIKYMVYFLLVVAVGGAGSIKGTL 244 Query: 244 LAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 LAAL+LGVFDVAGKYYVP++GAFVIYGLMVVLL+LFP GL+ RR Sbjct: 245 LAALVLGVFDVAGKYYVPDVGAFVIYGLMVVLLVLFPGGLLGRRA 289 >ref|ZP_00943592.1| LivH [Ralstonia solanacearum UW551] ref|YP_002260245.1| transmembrane protein [Ralstonia solanacearum IPO1609] gb|EAP73999.1| LivH [Ralstonia solanacearum UW551] emb|CAQ62180.1| transmembrane protein [Ralstonia solanacearum IPO1609] Length = 289 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 224/285 (78%), Positives = 255/285 (89%), Gaps = 2/285 (0%) Query: 6 LGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGVPFLAT 65 LGVLFDG+AYG LLFLI +GLSVTMG+M+FINLAHGAFAM GGYVCV L+NR+GVPFLAT Sbjct: 5 LGVLFDGLAYGCLLFLIGIGLSVTMGLMHFINLAHGAFAMAGGYVCVVLMNRLGVPFLAT 64 Query: 66 LPLAFIAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLP 125 LP+AF+A A VG +LER+LYRRLY+AS LDQVLFSI L FMA+AGAT+ WGP+QQPV LP Sbjct: 65 LPIAFLATAAVGFVLERTLYRRLYRASPLDQVLFSIALVFMAMAGATYIWGPSQQPVELP 124 Query: 126 DWLRGQISLL--GLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGL 183 + LRGQ S+ GL+VG YR+FL+GVVV++T LG LIERTRFGAQ+RASVDN A+AGL Sbjct: 125 EALRGQWSVFDTGLEVGRYRLFLVGVVVVLTALLGWLIERTRFGAQVRASVDNPQASAGL 184 Query: 184 GINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPL 243 GINV VFS+TFALGSGLAGLGGGLGIDVLGLDP FP+KYMVYFLLVVAVGGAG+IKG L Sbjct: 185 GINVGLVFSVTFALGSGLAGLGGGLGIDVLGLDPAFPIKYMVYFLLVVAVGGAGSIKGTL 244 Query: 244 LAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 LAAL+LGVFDVAGKYYVPE+GAFVIYGLMV+LL+LFP GL+ RR Sbjct: 245 LAALVLGVFDVAGKYYVPEVGAFVIYGLMVLLLVLFPGGLLGRRA 289 >ref|YP_003751829.1| transmembrane abc transporter protein [Ralstonia solanacearum PSI07] emb|CBJ50533.1| putative transmembrane abc transporter protein [Ralstonia solanacearum PSI07] emb|CCA79535.1| putative transmembrane abc transporter protein [blood disease bacterium R229] Length = 289 Score = 318 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 224/285 (78%), Positives = 255/285 (89%), Gaps = 2/285 (0%) Query: 6 LGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGVPFLAT 65 LGVLFDG+AYG LLFLI +GLSVTMG+M+FINLAHGAFAM GGYVCV L+NR+GVPFLAT Sbjct: 5 LGVLFDGLAYGCLLFLIGIGLSVTMGLMHFINLAHGAFAMAGGYVCVVLMNRLGVPFLAT 64 Query: 66 LPLAFIAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLP 125 LP+AF+A A G +LER+LYRRLY+AS LDQVLFSI L FMA+AGAT+ WGP+QQPV LP Sbjct: 65 LPIAFLATAAAGFVLERTLYRRLYRASPLDQVLFSIALVFMAMAGATYVWGPSQQPVELP 124 Query: 126 DWLRGQISLL--GLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGL 183 + LRGQ+ + GL+VG YR+FL+GVVV++TV L LIERTRFGAQ+RASVDNQ AAAGL Sbjct: 125 EALRGQLRVFDTGLEVGRYRLFLVGVVVVLTVLLAWLIERTRFGAQVRASVDNQQAAAGL 184 Query: 184 GINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPL 243 GINV VFS+TFALGSGLAGLGGGLGIDVLGLDP FP+KYMVYFLLVVAVGGAG+IKG L Sbjct: 185 GINVGLVFSVTFALGSGLAGLGGGLGIDVLGLDPAFPIKYMVYFLLVVAVGGAGSIKGTL 244 Query: 244 LAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 LAAL+LGVFDVAGKYYVPE+GAFVIYGLMV+LL LFP+GL+ RR Sbjct: 245 LAALVLGVFDVAGKYYVPEVGAFVIYGLMVLLLALFPSGLLGRRA 289