BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5163.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777377.1| branched-chain amino acid ABC transporter pe... 474 e-131 ref|NP_520368.1| transmembrane ABC transporter protein [Ralstoni... 377 e-102 ref|YP_586911.1| branched-chain amino acid ABC transport system ... 376 e-102 emb|CAQ35887.1| transmembrane protein [Ralstonia solanacearum Mo... 376 e-102 ref|YP_001900018.1| inner-membrane translocator [Ralstonia picke... 375 e-102 >ref|YP_003777377.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65469.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 317/331 (95%), Positives = 326/331 (98%) Query: 5 STSTRAAAKPVLRLPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLI 64 +T +A +PVLRLPNDRWT LEILFWLLPVAAYF+FPDYLVLISQIMIVGLFAVSLDLI Sbjct: 8 NTPNPSAMQPVLRLPNDRWTLLEILFWLLPVAAYFIFPDYLVLISQIMIVGLFAVSLDLI 67 Query: 65 LGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGLVLAAIVAAVAGFLVSFLVVRGAD 124 LGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGL+LAA+VAA+AGFLVSFLVVRGAD Sbjct: 68 LGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGLLLAAVVAAIAGFLVSFLVVRGAD 127 Query: 125 LTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVL 184 LTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVL Sbjct: 128 LTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVL 187 Query: 185 LLLFVVLRRMVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQ 244 LLLFV+LRR+VNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQ Sbjct: 188 LLLFVILRRLVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQ 247 Query: 245 TTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIG 304 TTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIG Sbjct: 248 TTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIG 307 Query: 305 LLLIVIVLFARGGLLGGLAVLRDKFFKGGRA 335 LLLIVIVLFARGGLLGGLAVLRDKFFKGGRA Sbjct: 308 LLLIVIVLFARGGLLGGLAVLRDKFFKGGRA 338 >ref|NP_520368.1| transmembrane ABC transporter protein [Ralstonia solanacearum GMI1000] emb|CAD15954.1| probable transmembrane abc transporter protein [Ralstonia solanacearum GMI1000] Length = 341 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 233/305 (76%), Positives = 262/305 (85%) Query: 18 LPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAA 77 LP+ RW+PLEI FW +PV +F+ PDYLV SQ++IVGLFA+SLDL+LGYAGIVSLGHA Sbjct: 22 LPDARWSPLEIAFWCVPVLVFFILPDYLVFGSQVLIVGLFALSLDLVLGYAGIVSLGHAG 81 Query: 78 FFGLGAYTAGLLAVHGWGEPITGLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLM 137 FFGLGAYTAGLLA HGWGEP++GLV AA VAA+ G VSFLVVRG DLTRLMVTLGIGLM Sbjct: 82 FFGLGAYTAGLLAAHGWGEPLSGLVAAAAVAALTGCCVSFLVVRGQDLTRLMVTLGIGLM 141 Query: 138 LFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVLLLLFVVLRRMVNS 197 L+EAANK AF+TGGVDGLSG+ M K+ G FEFDL+GR AY YS AVL LFV+LRR+V S Sbjct: 142 LYEAANKMAFLTGGVDGLSGVTMDKLLGSFEFDLSGRTAYVYSLAVLFGLFVLLRRLVRS 201 Query: 198 PFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFP 257 PFGL LRGI++G RMPA+GADV RLV FTV+AAVAGVAG LLAQTTQFVGLD LGF Sbjct: 202 PFGLSLRGIQQGPGRMPALGADVRMRLVAAFTVSAAVAGVAGGLLAQTTQFVGLDALGFS 261 Query: 258 RSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIGLLLIVIVLFARGG 317 RSAELLI+LVLGG GRLYG LVGA V+MLAQD L+G+NP YWQFWIGLLL+ IVLFARGG Sbjct: 262 RSAELLIMLVLGGAGRLYGALVGAAVFMLAQDVLAGINPVYWQFWIGLLLMAIVLFARGG 321 Query: 318 LLGGL 322 +LGGL Sbjct: 322 ILGGL 326 >ref|YP_586911.1| branched-chain amino acid ABC transport system permease [Cupriavidus metallidurans CH34] gb|ABF11642.1| putative branched-chain amino acid ABC transport system permease protein [Cupriavidus metallidurans CH34] Length = 331 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 236/311 (75%), Positives = 272/311 (87%) Query: 15 VLRLPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLG 74 V RLP+ RW P EI+FWL PV A+FL PDYL+L SQI+IVGLFA+SLDLILGYAGIVSLG Sbjct: 5 VHRLPDGRWHPAEIVFWLAPVVAFFLLPDYLILGSQILIVGLFALSLDLILGYAGIVSLG 64 Query: 75 HAAFFGLGAYTAGLLAVHGWGEPITGLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGI 134 HAAFFGLGAY AGLL HGWGEP+TGL+ AA VAA+AG+L SFLV+RG DLTRLMVTLGI Sbjct: 65 HAAFFGLGAYMAGLLGAHGWGEPLTGLLAAAAVAALAGWLCSFLVIRGGDLTRLMVTLGI 124 Query: 135 GLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVLLLLFVVLRRM 194 GLMLFEAANKAAF+TGGVDGLSG+ M KI G+FEFDL G+ AY YS VL ++F+++RR+ Sbjct: 125 GLMLFEAANKAAFLTGGVDGLSGVTMNKILGMFEFDLFGKTAYVYSLVVLFVIFLLVRRL 184 Query: 195 VNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVL 254 V SPFGL LRGIREG RRMPA+G DV RL +FTVAAA+AGVAG LLAQTTQFVG+DVL Sbjct: 185 VASPFGLSLRGIREGARRMPALGTDVPARLRAVFTVAAAIAGVAGGLLAQTTQFVGMDVL 244 Query: 255 GFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIGLLLIVIVLFA 314 GFPRSAELL++LVLGGTGRLYG LVGA ++M+AQD L+G+NP YWQFWIGLLL+VIVLFA Sbjct: 245 GFPRSAELLVMLVLGGTGRLYGALVGAALFMIAQDVLAGINPVYWQFWIGLLLVVIVLFA 304 Query: 315 RGGLLGGLAVL 325 RGG++G L+ L Sbjct: 305 RGGVMGALSAL 315 >emb|CAQ35887.1| transmembrane protein [Ralstonia solanacearum MolK2] Length = 341 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 234/305 (76%), Positives = 263/305 (86%) Query: 18 LPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAA 77 LP+ RW+PLEI FW +PV +F+ PDYLV SQ++I GLFA+SLDL+LGYAGIVSLGHA Sbjct: 22 LPDARWSPLEIAFWCVPVLVFFVLPDYLVFGSQVLIAGLFALSLDLVLGYAGIVSLGHAG 81 Query: 78 FFGLGAYTAGLLAVHGWGEPITGLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLM 137 FFGLGAYTAGLLA HGWGEP++GL AA VAA+AG VSFLVVRG DLTRLMVTLGIGLM Sbjct: 82 FFGLGAYTAGLLAAHGWGEPLSGLAAAAAVAALAGCCVSFLVVRGQDLTRLMVTLGIGLM 141 Query: 138 LFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVLLLLFVVLRRMVNS 197 L+EAANK AF+TGGVDGLSG+ M K+ G FEFDL+GR AY YS AVL LFV+LRR+V S Sbjct: 142 LYEAANKMAFLTGGVDGLSGVTMEKLLGRFEFDLSGRTAYVYSLAVLFGLFVLLRRLVRS 201 Query: 198 PFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFP 257 PFGL LRGI++G RMPA+GADV RLVV FTV+AAVAGVAG LLAQTTQFVGLD LGF Sbjct: 202 PFGLSLRGIQQGPARMPALGADVRMRLVVAFTVSAAVAGVAGGLLAQTTQFVGLDALGFS 261 Query: 258 RSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIGLLLIVIVLFARGG 317 RSAELLI+LVLGG GRLYG LVGA V+MLAQD L+G+NP YWQFWIGLLL+VIVLFARGG Sbjct: 262 RSAELLIMLVLGGAGRLYGALVGAAVFMLAQDVLAGINPVYWQFWIGLLLMVIVLFARGG 321 Query: 318 LLGGL 322 +LGGL Sbjct: 322 ILGGL 326 >ref|YP_001900018.1| inner-membrane translocator [Ralstonia pickettii 12J] ref|ZP_07676426.1| inner-membrane translocator [Ralstonia sp. 5_7_47FAA] gb|ACD27586.1| inner-membrane translocator [Ralstonia pickettii 12J] gb|EFP64998.1| inner-membrane translocator [Ralstonia sp. 5_7_47FAA] Length = 344 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 230/305 (75%), Positives = 261/305 (85%) Query: 18 LPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAA 77 LP RW+P EI FW +P+A +FL PDYLV SQ++IVGLFA+SLDL+LGYAGIVSLGHA Sbjct: 22 LPQARWSPFEIAFWCVPIAVFFLLPDYLVFGSQVLIVGLFALSLDLVLGYAGIVSLGHAG 81 Query: 78 FFGLGAYTAGLLAVHGWGEPITGLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLM 137 FFGLGAYTAGLLA HGWGEP+TGL A+VAA+AGF VSFLVVRG DLTRLMVTLGIGLM Sbjct: 82 FFGLGAYTAGLLAAHGWGEPLTGLAAGAVVAALAGFCVSFLVVRGQDLTRLMVTLGIGLM 141 Query: 138 LFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVLLLLFVVLRRMVNS 197 L+EAANK AF+TGGVDGLSG+ M + G FEFDL GR AY YS VL L+FV LRR+V S Sbjct: 142 LYEAANKMAFLTGGVDGLSGVAMRNLLGTFEFDLEGRTAYFYSLVVLFLVFVGLRRLVRS 201 Query: 198 PFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFP 257 PFGL LRGI++G +RMPAIGA+V RLV FTV+AA+AGVAG LLAQTTQFVGLD LGF Sbjct: 202 PFGLSLRGIQQGPKRMPAIGANVRMRLVAAFTVSAAIAGVAGGLLAQTTQFVGLDSLGFS 261 Query: 258 RSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIGLLLIVIVLFARGG 317 RSAELLI+LVLGG GRLYG L+GA V+M+AQD L+G+NP YWQFWIGLLL+VIVLFARGG Sbjct: 262 RSAELLIMLVLGGAGRLYGALIGAAVFMIAQDVLAGINPVYWQFWIGLLLMVIVLFARGG 321 Query: 318 LLGGL 322 +LGGL Sbjct: 322 ILGGL 326