BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5161.p         (278 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777375.1| branched-chain amino acid ABC transporter AT...   411   e-113
ref|YP_003751832.1| high-affinity branched-chain amino acid tran...   323   2e-86
emb|CCA79531.1| High-affinity branched-chain amino acid transpor...   322   5e-86
gb|AEG68485.1| high-affinity branched-chain amino acid transport...   321   7e-86
ref|ZP_00943589.1| LivF [Ralstonia solanacearum UW551] >gi|20774...   320   1e-85

>ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65467.1| ABC-type branched-chain amino acid transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 219/233 (93%), Positives = 225/233 (96%)

Query: 46  MPELLTLDKVSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS 105
           MPELL LD+VSAGYG SIVLE+VSF+MQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS
Sbjct: 1   MPELLALDRVSAGYGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS 60

Query: 106 IHWRGSNIARVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWNLQKIYSIFPR 165
           I WRG +IARV THKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKW+LQKIY IFPR
Sbjct: 61  IRWRGGDIARVATHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWDLQKIYQIFPR 120

Query: 166 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 225
           LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE
Sbjct: 121 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 180

Query: 226 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLDDGETLDRLVAVA 278
           EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLL DG+ LDRLVAVA
Sbjct: 181 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGDKLDRLVAVA 233


>ref|YP_003751832.1| high-affinity branched-chain amino acid transport ATP-binding
           protein [Ralstonia solanacearum PSI07]
 emb|CBJ50536.1| High-affinity branched-chain amino acid transport ATP-binding
           protein [Ralstonia solanacearum PSI07]
          Length = 233

 Score =  323 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 167/233 (71%), Positives = 199/233 (85%)

Query: 46  MPELLTLDKVSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS 105
           M ELL+ + V+AG+G+++VL++VSFS+  G SLALLGRNGVGKT+LL TLMG TRLHGG 
Sbjct: 1   MAELLSFENVTAGHGNAVVLDDVSFSLDAGGSLALLGRNGVGKTTLLATLMGFTRLHGGR 60

Query: 106 IHWRGSNIARVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWNLQKIYSIFPR 165
           I WRG++IARVP H+RA AGLGWVPQER+MFPSL+VEEHLTVV+R G W++ ++Y  FPR
Sbjct: 61  IRWRGADIARVPPHRRARAGLGWVPQERWMFPSLTVEEHLTVVQRPGAWDVARVYKTFPR 120

Query: 166 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 225
           L ERR N+GNQLSGGEQQM+AIARAL+ +P++LLLDEPMEGLAPIIVQEL + IR LV E
Sbjct: 121 LGERRRNLGNQLSGGEQQMVAIARALVTNPALLLLDEPMEGLAPIIVQELGRAIRALVDE 180

Query: 226 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLDDGETLDRLVAVA 278
            GM+VI+VEQHAR+AL LTQRA+VLDRGRIVHAS S  LL D   L RLVAVA
Sbjct: 181 GGMAVILVEQHARLALELTQRALVLDRGRIVHASASADLLADAPLLQRLVAVA 233


>emb|CCA79531.1| High-affinity branched-chain amino acid transport ATP-binding
           protein [blood disease bacterium R229]
          Length = 233

 Score =  322 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 167/233 (71%), Positives = 198/233 (84%)

Query: 46  MPELLTLDKVSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS 105
           M ELL+ + V+AG+G+++VL++VSFS+  G SLALLGRNGVGKT+LL TLMG TRLHGG 
Sbjct: 1   MAELLSFENVTAGHGNAVVLDDVSFSLDAGGSLALLGRNGVGKTTLLATLMGFTRLHGGR 60

Query: 106 IHWRGSNIARVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWNLQKIYSIFPR 165
           I WRG +IARVP H+RA AGLGWVPQER+MFPSL+VEEHLTVV+R G W++ ++Y  FPR
Sbjct: 61  IRWRGVDIARVPPHRRARAGLGWVPQERWMFPSLTVEEHLTVVQRPGAWDVARVYKTFPR 120

Query: 166 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 225
           L ERR N+GNQLSGGEQQM+AIARAL+ +P++LLLDEPMEGLAPIIVQEL + IR LV E
Sbjct: 121 LGERRRNLGNQLSGGEQQMVAIARALVTNPALLLLDEPMEGLAPIIVQELGRAIRALVDE 180

Query: 226 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLDDGETLDRLVAVA 278
            GM+VI+VEQHAR+AL LTQRA+VLDRGRIVHAS S  LL D   L RLVAVA
Sbjct: 181 GGMAVILVEQHARLALELTQRALVLDRGRIVHASASADLLADAPLLQRLVAVA 233


>gb|AEG68485.1| high-affinity branched-chain amino acid transport ATP-binding
           protein [Ralstonia solanacearum Po82]
          Length = 233

 Score =  321 bits (823), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 166/233 (71%), Positives = 198/233 (84%)

Query: 46  MPELLTLDKVSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS 105
           M ELL+ ++V+AGYG+++VL+EVSF +  G SLALLGRNGVGKT+LL TLMG TRLHGG 
Sbjct: 1   MAELLSFERVTAGYGNAVVLDEVSFGLDAGGSLALLGRNGVGKTTLLATLMGFTRLHGGR 60

Query: 106 IHWRGSNIARVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWNLQKIYSIFPR 165
           I WRG++IARVP H+RA AGLGWVPQER+MFPSL+VEEHLT V R G W++ ++Y  FPR
Sbjct: 61  IRWRGADIARVPPHRRARAGLGWVPQERWMFPSLTVEEHLTAVLRPGAWDVARVYQTFPR 120

Query: 166 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 225
           L ERR N+GNQLSGGEQQM+AIARAL+ +P++LLLDEPMEGLAPIIVQEL + IR LV +
Sbjct: 121 LEERRRNLGNQLSGGEQQMVAIARALVTNPALLLLDEPMEGLAPIIVQELGRAIRALVDD 180

Query: 226 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLDDGETLDRLVAVA 278
            GM+VI+VEQHAR+AL+LTQRA+VLDRGRIVHAS S  LL D   L RLVAVA
Sbjct: 181 GGMAVILVEQHARLALALTQRALVLDRGRIVHASASADLLADAPLLQRLVAVA 233


>ref|ZP_00943589.1| LivF [Ralstonia solanacearum UW551]
 ref|YP_002260242.1| atp-binding protein [Ralstonia solanacearum IPO1609]
 gb|EAP73996.1| LivF [Ralstonia solanacearum UW551]
 emb|CAQ35889.1| atp-binding protein [Ralstonia solanacearum MolK2]
 emb|CAQ62177.1| atp-binding protein [Ralstonia solanacearum IPO1609]
          Length = 233

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 165/233 (70%), Positives = 196/233 (84%)

Query: 46  MPELLTLDKVSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS 105
           M ELL  D+V+AGYG+++VL++VSF +  G SLALLGRNGVGKT+LL TLMG TRLHGG 
Sbjct: 1   MAELLAFDRVTAGYGNAVVLDDVSFGLDAGGSLALLGRNGVGKTTLLATLMGFTRLHGGR 60

Query: 106 IHWRGSNIARVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWNLQKIYSIFPR 165
           I WRG++IARVP H+RA AGLGWVPQER+MFPSL+VEEHLT V R G W++ ++Y  FPR
Sbjct: 61  IRWRGADIARVPPHRRARAGLGWVPQERWMFPSLTVEEHLTAVLRPGAWDVARVYQTFPR 120

Query: 166 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 225
           L ERR N+GNQLSGGEQQM+AIARAL+ +P++LLLDEPMEGLAPIIVQEL + IR LV +
Sbjct: 121 LEERRRNLGNQLSGGEQQMVAIARALVTNPALLLLDEPMEGLAPIIVQELGRAIRALVDD 180

Query: 226 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLDDGETLDRLVAVA 278
            GM+VI+VEQHAR+AL LTQRA+VLDRGRIVHAS S  LL D   L RLVA+A
Sbjct: 181 GGMAVILVEQHARLALELTQRALVLDRGRIVHASASADLLADAPLLQRLVAMA 233