BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5160.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777372.1| MarR family transcription regulator protein ... 256 6e-67 ref|ZP_03265720.1| transcriptional regulator, MarR family [Burkh... 138 3e-31 ref|YP_001778650.1| MarR family transcriptional regulator [Burkh... 137 6e-31 ref|YP_003606843.1| MarR family transcriptional regulator [Burkh... 135 1e-30 ref|ZP_02906543.1| transcriptional regulator, MarR family [Burkh... 135 2e-30 >ref|YP_003777372.1| MarR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65464.1| MarR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 169 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 143/168 (85%), Positives = 153/168 (91%), Gaps = 2/168 (1%) Query: 4 TTPPK--DESQLIDLYEHPGHLLRRAQQISVSIFHDETGGIITPVQYAILRMLSNHPGID 61 + PP DES L DLYEHPGHLLRRAQQISVSIFHDE GG++TPVQYAILRMLSNHPGID Sbjct: 2 SRPPSHSDESPLTDLYEHPGHLLRRAQQISVSIFHDEIGGVVTPVQYAILRMLSNHPGID 61 Query: 62 QVSLSGLVAIDTSTGATVCARLEEKGLLVREVIPHNRRQRALRITQAGEALLEELIPGLQ 121 QV+L+GLVAIDTSTGATVCARLEEKGLL+REVIPHNRRQRALR T AGEALLEEL PGLQ Sbjct: 62 QVTLAGLVAIDTSTGATVCARLEEKGLLLREVIPHNRRQRALRTTAAGEALLEELTPGLQ 121 Query: 122 RLRKRILAPLDEAEQQQFMLLLDKLVHENNPQSRAPLARLRDQDCQED 169 RLRKRILAPL+EAEQ+QFM LLDKLV NNPQSRAPLARL+D+ C ED Sbjct: 122 RLRKRILAPLEEAEQRQFMALLDKLVQLNNPQSRAPLARLQDERCDED 169 >ref|ZP_03265720.1| transcriptional regulator, MarR family [Burkholderia sp. H160] gb|EEA02692.1| transcriptional regulator, MarR family [Burkholderia sp. H160] Length = 166 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 86/163 (52%), Positives = 106/163 (65%), Gaps = 2/163 (1%) Query: 1 MPQTTPPKDESQLIDLYEHPGHLLRRAQQISVSIFHDETGGIITPVQYAILRMLSNHPGI 60 M +T + IDLY PGHL+RRA QISVS+FHD G +TPVQYA+LRML PG+ Sbjct: 1 MATSTDTSTSAISIDLYHQPGHLIRRAHQISVSMFHDLVGREVTPVQYAVLRMLQELPGL 60 Query: 61 DQVSLSGLVAIDTSTGATVCARLEEKGLLVREVIPHNRRQRALRITQAGEALLEELIPGL 120 DQV+L+ V +DTST A + RLE KG +VREV RRQR L +T AGE LL+ELIPG+ Sbjct: 61 DQVTLAQRVGLDTSTTADIAVRLEAKGWIVREV--LPRRQRRLLLTPAGEQLLDELIPGV 118 Query: 121 QRLRKRILAPLDEAEQQQFMLLLDKLVHENNPQSRAPLARLRD 163 L +L + E + + + LL K VH NN QSRAPL D Sbjct: 119 NALNHSLLDGMGEEDAHELLRLLRKFVHLNNDQSRAPLRSASD 161 >ref|YP_001778650.1| MarR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA94160.1| transcriptional regulator, MarR family [Burkholderia cenocepacia MC0-3] Length = 162 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 111/158 (70%), Gaps = 2/158 (1%) Query: 1 MPQTTPPKDESQLIDLYEHPGHLLRRAQQISVSIFHDETGGIITPVQYAILRMLSNHPGI 60 M +TTP + IDLY+ PGHL+RRA QI+V++F+++ G +TPVQYA+LRML +PG+ Sbjct: 1 MEKTTPADLPAFPIDLYDEPGHLIRRAHQIAVAMFYEKLGRDVTPVQYAVLRMLYENPGL 60 Query: 61 DQVSLSGLVAIDTSTGATVCARLEEKGLLVREVIPHNRRQRALRITQAGEALLEELIPGL 120 DQV+L+ VA+DTST A + RLE KGL+VREV+ RRQR L +TQAG LL LIP + Sbjct: 61 DQVTLAQRVALDTSTTADLAVRLEAKGLIVREVL--PRRQRRLLLTQAGVELLTHLIPSV 118 Query: 121 QRLRKRILAPLDEAEQQQFMLLLDKLVHENNPQSRAPL 158 LR + + E + Q+ M LL K VH NN QSRAPL Sbjct: 119 TELRAGLFDGMGEDDSQELMRLLRKFVHLNNEQSRAPL 156 >ref|YP_003606843.1| MarR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG17332.1| transcriptional regulator, MarR family [Burkholderia sp. CCGE1002] Length = 166 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 85/163 (52%), Positives = 109/163 (66%), Gaps = 2/163 (1%) Query: 1 MPQTTPPKDESQLIDLYEHPGHLLRRAQQISVSIFHDETGGIITPVQYAILRMLSNHPGI 60 M +T + IDLY+ PGHL+RRA QISVS+FHD G +TPVQYA+LRML PG+ Sbjct: 1 MVTSTETSTSAISIDLYDQPGHLIRRAHQISVSMFHDLIGREVTPVQYAVLRMLQELPGL 60 Query: 61 DQVSLSGLVAIDTSTGATVCARLEEKGLLVREVIPHNRRQRALRITQAGEALLEELIPGL 120 DQV+L+ V +DTST A + RLE KG +VREV+ RRQR L +T AGE LL+ELIPG+ Sbjct: 61 DQVTLAQRVGLDTSTTADIAVRLEAKGWIVREVL--PRRQRRLLLTPAGEQLLDELIPGV 118 Query: 121 QRLRKRILAPLDEAEQQQFMLLLDKLVHENNPQSRAPLARLRD 163 L +L + + + ++ + LL K VH NN QSRAPL D Sbjct: 119 NALNHGLLDGMGDDDARELLRLLRKFVHLNNDQSRAPLRSASD 161 >ref|ZP_02906543.1| transcriptional regulator, MarR family [Burkholderia ambifaria MEX-5] gb|EDT42328.1| transcriptional regulator, MarR family [Burkholderia ambifaria MEX-5] Length = 179 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 1 MPQTTPPKDESQLIDLYEHPGHLLRRAQQISVSIFHDETGGIITPVQYAILRMLSNHPGI 60 M +T P + +DLY+ PGHL+RRA QI+V++F+++ G +TPVQYA+LRML PG+ Sbjct: 18 MEKTNPADAPAFPLDLYDEPGHLIRRAHQIAVAMFYEKLGRDVTPVQYAVLRMLYECPGL 77 Query: 61 DQVSLSGLVAIDTSTGATVCARLEEKGLLVREVIPHNRRQRALRITQAGEALLEELIPGL 120 DQV+L+ VA+DTST A + RLE KGL+VREV+ RRQR L +T AG LL LIP + Sbjct: 78 DQVTLAQRVALDTSTTADLAVRLEAKGLIVREVL--PRRQRRLLLTPAGVELLTHLIPSV 135 Query: 121 QRLRKRILAPLDEAEQQQFMLLLDKLVHENNPQSRAPL 158 + LR + + E + ++ M LL K VH NN QSRAPL Sbjct: 136 KELRAGLFDGMGEGDSEELMRLLRKFVHLNNAQSRAPL 173