BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5155.p (395 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777369.1| branched-chain amino acid ABC transporter pe... 677 0.0 ref|YP_550192.1| extracellular ligand-binding receptor [Polaromo... 448 e-124 ref|YP_994969.1| extracellular ligand-binding receptor [Verminep... 440 e-121 ref|YP_521574.1| extracellular ligand-binding receptor [Rhodofer... 439 e-121 ref|YP_002943663.1| extracellular ligand-binding receptor [Vario... 427 e-117 >ref|YP_003777369.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65461.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 373/395 (94%), Positives = 388/395 (98%) Query: 1 MMSEMIDTRRRHLVLAGTALAAMGAPLVARAADALKVGLIVPMSGPFASTGRQIEAAVKL 60 MMSEMI+TRRR ++LAGTAL A GAP++ARAAD LKVGLIVPMSGPFASTGRQIEAAVKL Sbjct: 1 MMSEMINTRRRQVMLAGTALVAGGAPMLARAADVLKVGLIVPMSGPFASTGRQIEAAVKL 60 Query: 61 YQQKFGDSAAGRKVEILLKDDGGVSPDVTKRLAQELVARDKAQVLMGFGLTPLALAAAPI 120 YQQK+GDS AGRKVEI+LKDDGGVSPDVTKRLAQELV+R+KAQVLMGFGLTPLALAAAPI Sbjct: 61 YQQKYGDSVAGRKVEIVLKDDGGVSPDVTKRLAQELVSREKAQVLMGFGLTPLALAAAPI 120 Query: 121 ATQAKVPMIVTAAATSIIPQRSPYIVRTGFTLAQVTSPLASWAAKNGIKSVVTFVSDYGP 180 ATQAK PMIVTAAATSIIPQRSPYIVRTGFTLAQVT+PLASWAAKNGIKSVVTFVSDYGP Sbjct: 121 ATQAKAPMIVTAAATSIIPQRSPYIVRTGFTLAQVTAPLASWAAKNGIKSVVTFVSDYGP 180 Query: 181 GLDAEKVFVKTFSEAGGKVMESVRVPLRNPDYAPFLQRVKDAKPQALFVFVPSGEGAAVL 240 GLDAEKVFVKTF EAGGKVMESVRVPLRNPDYAPFLQRVKDAKPQALFVFVPSGEGAAVL Sbjct: 181 GLDAEKVFVKTFGEAGGKVMESVRVPLRNPDYAPFLQRVKDAKPQALFVFVPSGEGAAVL 240 Query: 241 KQFTERGLAAAGIRLICTGDVLDDDLMAGIGAAAKDVVSSHHYSAAHPSAANKEYVDAMA 300 KQFTERGLAAAGIRLICTGDVLDDDLMAGIGAAAKDVVSSHHYSAAHPSAANKEYV+AMA Sbjct: 241 KQFTERGLAAAGIRLICTGDVLDDDLMAGIGAAAKDVVSSHHYSAAHPSAANKEYVEAMA 300 Query: 301 KANKGMRANFHSVGAYDGMHLLYESLKKTGGDADGEKLLAAMKGMSWESVRGPVSIDAST 360 KANKGMRANFHSVGAYDGMHLLYESLKKTGGDADG+KLLAAMKGMSWESVRGPV++DA+T Sbjct: 301 KANKGMRANFHSVGAYDGMHLLYESLKKTGGDADGDKLLAAMKGMSWESVRGPVAVDAAT 360 Query: 361 RDIVQTVYMRKAELRGAEFYNVEFDQVEKVRDPGV 395 RDIVQTVYMRKAELRGAEFYNVEFDQVEKVRDPGV Sbjct: 361 RDIVQTVYMRKAELRGAEFYNVEFDQVEKVRDPGV 395 >ref|YP_550192.1| extracellular ligand-binding receptor [Polaromonas sp. JS666] gb|ABE45294.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas sp. JS666] Length = 390 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 227/362 (62%), Positives = 285/362 (78%), Gaps = 1/362 (0%) Query: 33 DALKVGLIVPMSGPFASTGRQIEAAVKLYQQKFGDSAAGRKVEILLKDDGGVSPDVTKRL 92 + ++GL++PM+GPFASTGRQIEAA KLY + GD+ AG+KVE+++KDD G +PDVTKRL Sbjct: 27 NKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNGDTVAGKKVELIIKDDTG-TPDVTKRL 85 Query: 93 AQELVARDKAQVLMGFGLTPLALAAAPIATQAKVPMIVTAAATSIIPQRSPYIVRTGFTL 152 AQE++ DK VL GFGLTPLALA AP+ATQ+K PM+V AAATS I Q SPYIVRT FTL Sbjct: 86 AQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTPMVVMAAATSSITQASPYIVRTSFTL 145 Query: 153 AQVTSPLASWAAKNGIKSVVTFVSDYGPGLDAEKVFVKTFSEAGGKVMESVRVPLRNPDY 212 QVT +A WA +NGIK VV+ VSDYGPG+DAE+ F F+ GG V+++VRVPLRNPD+ Sbjct: 146 PQVTIGVADWAPRNGIKKVVSLVSDYGPGIDAERTFKDRFTFNGGTVVDAVRVPLRNPDF 205 Query: 213 APFLQRVKDAKPQALFVFVPSGEGAAVLKQFTERGLAAAGIRLICTGDVLDDDLMAGIGA 272 APFLQ+V+DAKP A+F FVPSG G+A++KQF ERGL AGI+LI TGDV DDD++ +G Sbjct: 206 APFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERGLDKAGIKLIATGDVTDDDILNDMGE 265 Query: 273 AAKDVVSSHHYSAAHPSAANKEYVDAMAKANKGMRANFHSVGAYDGMHLLYESLKKTGGD 332 A VV+SHHYSAAH S N+++V+A KANKG+R NF +VG YDGM ++YE+LK T G Sbjct: 266 VAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLRPNFMAVGGYDGMRVIYEALKTTKGA 325 Query: 333 ADGEKLLAAMKGMSWESVRGPVSIDASTRDIVQTVYMRKAELRGAEFYNVEFDQVEKVRD 392 GE LLAAMKG +ES RGP+ +DA +RDIVQ VY+RK E G + YNVEF+ ++ V+D Sbjct: 326 GGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNVYIRKVEKVGGQLYNVEFETIKDVKD 385 Query: 393 PG 394 PG Sbjct: 386 PG 387 >ref|YP_994969.1| extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] gb|ABM55951.1| Extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] Length = 395 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 236/377 (62%), Positives = 287/377 (76%), Gaps = 2/377 (0%) Query: 19 ALAAMGAPLVARAADA-LKVGLIVPMSGPFASTGRQIEAAVKLYQQKFGDSAAGRKVEIL 77 ALA A L A D K+GLI+PM+G A+TGRQIEAA KLY + GD+ AGRKV++L Sbjct: 17 ALATGLAALPVFAQDKPFKIGLILPMTGQQATTGRQIEAAAKLYMAQNGDTVAGRKVQLL 76 Query: 78 LKDDGGVSPDVTKRLAQELVARDKAQVLMGFGLTPLALAAAPIATQAKVPMIVTAAATSI 137 ++DD + PD+T+RLAQELV DK VL G G+TP ALA AP+ATQ+K P++V +AATS Sbjct: 77 VRDDTSL-PDMTRRLAQELVVNDKVNVLAGMGITPSALATAPLATQSKTPLVVMSAATSS 135 Query: 138 IPQRSPYIVRTGFTLAQVTSPLASWAAKNGIKSVVTFVSDYGPGLDAEKVFVKTFSEAGG 197 I + SPY+VRT FTL QV+ PLA WA+ NGIK VVT VSDYGPG+DAEK F + S GG Sbjct: 136 ITEASPYVVRTSFTLPQVSVPLADWASGNGIKKVVTLVSDYGPGIDAEKYFSQRLSANGG 195 Query: 198 KVMESVRVPLRNPDYAPFLQRVKDAKPQALFVFVPSGEGAAVLKQFTERGLAAAGIRLIC 257 +V E++RVPLR+PD+APFLQ+V+DAKP ALFVFVPSG AAV+KQF ERGL AGIRLI Sbjct: 196 QVTEALRVPLRSPDFAPFLQKVRDAKPDALFVFVPSGASAAVMKQFLERGLGKAGIRLIA 255 Query: 258 TGDVLDDDLMAGIGAAAKDVVSSHHYSAAHPSAANKEYVDAMAKANKGMRANFHSVGAYD 317 TGDV +DD + +G A VV+SHHYSAAHPS NK++V A +ANKG+R NF +VG YD Sbjct: 256 TGDVTEDDQLNAMGDGALGVVTSHHYSAAHPSPLNKQFVQAFEQANKGLRPNFMAVGGYD 315 Query: 318 GMHLLYESLKKTGGDADGEKLLAAMKGMSWESVRGPVSIDASTRDIVQTVYMRKAELRGA 377 GM ++YE+LK T G DG+ LLAAMKG +ES RGPVSIDA TRDIVQ VY+RK E Sbjct: 316 GMRVIYEALKTTRGVGDGDALLAAMKGQVFESPRGPVSIDAQTRDIVQNVYLRKVERVDG 375 Query: 378 EFYNVEFDQVEKVRDPG 394 + YNVEFD +E V+DPG Sbjct: 376 QLYNVEFDVIEGVKDPG 392 >ref|YP_521574.1| extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] gb|ABD68043.1| Extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] Length = 390 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 230/386 (59%), Positives = 286/386 (74%), Gaps = 1/386 (0%) Query: 9 RRRHLVLAGTALAAMGAPLVARAADALKVGLIVPMSGPFASTGRQIEAAVKLYQQKFGDS 68 +R+ + A++ + A + K+GLI+PM+G ASTGRQIEAA KLY + GD+ Sbjct: 3 KRQFIHAIALAVSLLAASNSIAQGNTFKIGLILPMTGQQASTGRQIEAAAKLYMAQNGDT 62 Query: 69 AAGRKVEILLKDDGGVSPDVTKRLAQELVARDKAQVLMGFGLTPLALAAAPIATQAKVPM 128 AG+KV +++KDD + PDVTKRLAQ+LV DK VL GFG+TP ALA APIATQ+K P+ Sbjct: 63 VAGKKVGLIVKDDTSI-PDVTKRLAQDLVVNDKVNVLAGFGITPSALATAPIATQSKTPL 121 Query: 129 IVTAAATSIIPQRSPYIVRTGFTLAQVTSPLASWAAKNGIKSVVTFVSDYGPGLDAEKVF 188 +V AAATS I Q SPY+VRT FTLAQ + WA KNGIK VVT VSDYGPG+DAEK F Sbjct: 122 VVMAAATSSITQASPYVVRTSFTLAQAAVAMGDWAPKNGIKKVVTLVSDYGPGIDAEKYF 181 Query: 189 VKTFSEAGGKVMESVRVPLRNPDYAPFLQRVKDAKPQALFVFVPSGEGAAVLKQFTERGL 248 + F GG+V ES+RVPLRNPD+APFLQ+V+D KP ALFVFVPSG GAAV+KQF ERG+ Sbjct: 182 KERFLFNGGQVPESLRVPLRNPDFAPFLQKVRDLKPDALFVFVPSGAGAAVMKQFLERGM 241 Query: 249 AAAGIRLICTGDVLDDDLMAGIGAAAKDVVSSHHYSAAHPSAANKEYVDAMAKANKGMRA 308 AGI+LI TGDV DDD + G+G A VV+SHHYS AHPSA NK++V+A KAN G+R Sbjct: 242 DKAGIKLIGTGDVTDDDQLNGMGDGALGVVTSHHYSTAHPSAVNKKFVEAFGKANPGLRP 301 Query: 309 NFHSVGAYDGMHLLYESLKKTGGDADGEKLLAAMKGMSWESVRGPVSIDASTRDIVQTVY 368 NF +VG YDGM ++YE+LK T G G+ LLAAMKG +ES RGP+ IDA TRD+V +Y Sbjct: 302 NFMAVGGYDGMRVIYEALKATKGQGGGDALLAAMKGQIFESPRGPMFIDAQTRDVVHNIY 361 Query: 369 MRKAELRGAEFYNVEFDQVEKVRDPG 394 +RK E + + YNVEFD ++ V+DPG Sbjct: 362 LRKVEKKDGQLYNVEFDVIKDVKDPG 387 >ref|YP_002943663.1| extracellular ligand-binding receptor [Variovorax paradoxus S110] gb|ACS18397.1| Extracellular ligand-binding receptor [Variovorax paradoxus S110] Length = 391 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 236/388 (60%), Positives = 294/388 (75%), Gaps = 3/388 (0%) Query: 9 RRRHLVLAG--TALAAMGAPLVARAADALKVGLIVPMSGPFASTGRQIEAAVKLYQQKFG 66 +RRHL+ TALA + A+ ++ K+GLI+PM+G ASTGRQIEAA +LY + G Sbjct: 2 QRRHLIQTAGLTALALSMSLATAQDSNKFKIGLILPMTGQQASTGRQIEAAARLYMAQNG 61 Query: 67 DSAAGRKVEILLKDDGGVSPDVTKRLAQELVARDKAQVLMGFGLTPLALAAAPIATQAKV 126 D+ AG+K+E+++KDD +PDVTKRLAQEL+ DK V+ GFG+TP ALAAAP+ATQ+K Sbjct: 62 DTVAGKKIELIVKDDVA-TPDVTKRLAQELIVNDKVNVIAGFGVTPAALAAAPLATQSKT 120 Query: 127 PMIVTAAATSIIPQRSPYIVRTGFTLAQVTSPLASWAAKNGIKSVVTFVSDYGPGLDAEK 186 P +V AAATS I + SPYIVR+ FTL QV+ + WA KNG+K+VVT V+DYGPG DAEK Sbjct: 121 PQVVMAAATSSITEASPYIVRSSFTLPQVSVAMGDWAPKNGVKTVVTLVADYGPGNDAEK 180 Query: 187 VFVKTFSEAGGKVMESVRVPLRNPDYAPFLQRVKDAKPQALFVFVPSGEGAAVLKQFTER 246 F + F GGKV+E +RVPLRNPD+APFLQ+V+DAKP ALFVFVPSG GAAV+KQF ER Sbjct: 181 FFTERFQLNGGKVIEKLRVPLRNPDFAPFLQKVRDAKPDALFVFVPSGAGAAVMKQFLER 240 Query: 247 GLAAAGIRLICTGDVLDDDLMAGIGAAAKDVVSSHHYSAAHPSAANKEYVDAMAKANKGM 306 G+ AGIR+I TGDV DDD + +G A VV+SHHYSAAHPS ANK++V+A KAN M Sbjct: 241 GMDKAGIRMIATGDVTDDDQLNDMGDGALGVVTSHHYSAAHPSPANKKFVEAFQKANPKM 300 Query: 307 RANFHSVGAYDGMHLLYESLKKTGGDADGEKLLAAMKGMSWESVRGPVSIDASTRDIVQT 366 R NF +VG YDGM ++YE+LK T G G+ LLAAMKG +ES RGPV IDA TRDIVQ Sbjct: 301 RPNFMAVGGYDGMRVIYEALKATKGQGGGDALLAAMKGQIFESPRGPVYIDAQTRDIVQD 360 Query: 367 VYMRKAELRGAEFYNVEFDQVEKVRDPG 394 VY+RK E + + YNVEFD ++ V+DPG Sbjct: 361 VYLRKVEKKDGQLYNVEFDVIKGVKDPG 388