BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5153.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777367.1| 3-carboxy-cis,cis-muconate cycloisomerase [H... 686 0.0 ref|YP_004752730.1| 3-carboxy-cis,cis-muconate cycloisomerase [C... 553 e-155 ref|YP_548686.1| 3-carboxy-cis,cis-muconate cycloisomerase [Pola... 367 3e-99 ref|YP_004154611.1| 3-carboxy-cis,cis-muconate cycloisomerase [V... 366 5e-99 ref|YP_981892.1| 3-carboxy-cis,cis-muconate cycloisomerase [Pola... 354 2e-95 >ref|YP_003777367.1| 3-carboxy-cis,cis-muconate cycloisomerase [Herbaspirillum seropedicae SmR1] gb|ADJ65459.1| 3-carboxy-cis,cis-muconate cycloisomerase protein [Herbaspirillum seropedicae SmR1] Length = 455 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 427/452 (94%), Positives = 438/452 (96%) Query: 1 MSVSIFDSFLTTSDMIAVFDDQAVVQAMLRFEQVLAEAEAAEGIIPEAAARAIASVCRAP 60 MSVSIFDSFLTTS+MIAVFDDQAVVQAMLRFEQVLAEA+AAEG+IP+AAARAIASVCRAP Sbjct: 1 MSVSIFDSFLTTSEMIAVFDDQAVVQAMLRFEQVLAEAQAAEGVIPDAAARAIASVCRAP 60 Query: 61 LYDINALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE 120 LYDI ALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE Sbjct: 61 LYDIPALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE 120 Query: 121 ALRLVDGELDQLAHRLLDLSQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL 180 ALRLV+GEL+QL+ RLLDL+QSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL Sbjct: 121 ALRLVEGELEQLSRRLLDLAQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL 180 Query: 181 QALAERALQLQLGGAVGTLAVLGEKGPAVAARMAAALGLKTPDAAWHTQRDEWIRLGTEM 240 QALAERALQLQLGGAVGTL VLGEKGPAVAARMAAAL LKTP+AAWHTQRD+WIRLG EM Sbjct: 181 QALAERALQLQLGGAVGTLTVLGEKGPAVAARMAAALELKTPEAAWHTQRDQWIRLGAEM 240 Query: 241 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAATRAPQ 300 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAA RAPQ Sbjct: 241 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAAARAPQ 300 Query: 301 QAAALLAAMSQQHERGLGNWQAELAEWPGLFLGVHGALRALNDAFAALVIDEARMLRNID 360 QAAALLAAMSQQHERGLGNWQAELAEWP LFLGVHGALRALNDAFA LVID RMLRNID Sbjct: 301 QAAALLAAMSQQHERGLGNWQAELAEWPALFLGVHGALRALNDAFAGLVIDAPRMLRNID 360 Query: 361 ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGAHLVDVLVDAVQADAQLSKEI 420 ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGA LVDVLVDAVQADAQL KEI Sbjct: 361 ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGAQLVDVLVDAVQADAQLRKEI 420 Query: 421 DLAMLRGLFDPVQATRPARRVAEGQLEHLRAL 452 DL MLRGLFDPVQATRPARR+AEGQLEHLR L Sbjct: 421 DLPMLRGLFDPVQATRPARRIAEGQLEHLRTL 452 >ref|YP_004752730.1| 3-carboxy-cis,cis-muconate cycloisomerase [Collimonas fungivorans Ter331] gb|AEK61907.1| 3-carboxy-cis,cis-muconate cycloisomerase [Collimonas fungivorans Ter331] Length = 463 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 334/451 (74%), Positives = 378/451 (83%) Query: 1 MSVSIFDSFLTTSDMIAVFDDQAVVQAMLRFEQVLAEAEAAEGIIPEAAARAIASVCRAP 60 MSVSIFDSFLTT +MIAVFDD AVVQAM RFE+ LA A+AAEGIIP++AARAIASVC A Sbjct: 1 MSVSIFDSFLTTPEMIAVFDDTAVVQAMFRFEEALARAQAAEGIIPDSAARAIASVCNAQ 60 Query: 61 LYDINALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE 120 LYDI AL+ A RRAG+LAIPLVKEL +TVAL+++E+A+HVHWGSTSQDV+DT MVLVTRE Sbjct: 61 LYDIPALVHASRRAGSLAIPLVKELTKTVALFNQESASHVHWGSTSQDVIDTGMVLVTRE 120 Query: 121 ALRLVDGELDQLAHRLLDLSQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL 180 AL L+D L L LL L+ HL TP+LARTLMQPAQVTS G K WAAPLLR+R QL Sbjct: 121 ALSLLDQGLQTLTDNLLRLAAQHLTTPILARTLMQPAQVTSFGFKLAGWAAPLLRARLQL 180 Query: 181 QALAERALQLQLGGAVGTLAVLGEKGPAVAARMAAALGLKTPDAAWHTQRDEWIRLGTEM 240 + A+RALQLQLGGAVGTLAV+G KGP VA RMA L L DAAWHTQRDEW+RLG E+ Sbjct: 181 RQAAQRALQLQLGGAVGTLAVMGAKGPLVAQRMADDLDLSVADAAWHTQRDEWVRLGLEV 240 Query: 241 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAATRAPQ 300 AVL+GSLGKIATDLSL+AQGEIAELAEPSGNGRGGSSAMPHKRNPVS+MIALAAATR PQ Sbjct: 241 AVLSGSLGKIATDLSLLAQGEIAELAEPSGNGRGGSSAMPHKRNPVSAMIALAAATRTPQ 300 Query: 301 QAAALLAAMSQQHERGLGNWQAELAEWPGLFLGVHGALRALNDAFAALVIDEARMLRNID 360 AAALLA M QQHERGLGNWQAELAEWPGLFL HGAL ALN+A A L +D ARMLRNID Sbjct: 301 NAAALLAGMGQQHERGLGNWQAELAEWPGLFLSAHGALSALNEAVAGLQVDAARMLRNID 360 Query: 361 ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGAHLVDVLVDAVQADAQLSKEI 420 ALQGLVFAE+ASI LAG IGRP+AH L+EQLT++AVADG L +V+++AV+AD +L ++ Sbjct: 361 ALQGLVFAEAASIYLAGAIGRPQAHGLMEQLTQRAVADGRQLAEVVLEAVKADERLRDQL 420 Query: 421 DLAMLRGLFDPVQATRPARRVAEGQLEHLRA 451 D +L LFDPV AT PA +A QL+ LRA Sbjct: 421 DPEVLSALFDPVAATAPAEALARRQLQGLRA 451 >ref|YP_548686.1| 3-carboxy-cis,cis-muconate cycloisomerase [Polaromonas sp. JS666] gb|ABE43788.1| 3-carboxy-cis,cis-muconate cycloisomerase [Polaromonas sp. JS666] Length = 419 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 210/372 (56%), Positives = 273/372 (73%), Gaps = 4/372 (1%) Query: 4 SIFDSFLTTSDMIAVFDDQAVVQAMLRFEQVLAEAEAAEGIIPEAAARAIASVCRAPLYD 63 SIF+ FL+TS+++ F ++ + AMLRFE LA A+A+ G+IPEA A++I+ C+ L+D Sbjct: 3 SIFEGFLSTSEILEAFSERNFLDAMLRFEGSLARAQASVGLIPEAVAQSISGTCKVELFD 62 Query: 64 INALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTREALR 123 + ++ RAG++AIPLVK L+ TV L++++AA VH+GSTSQDV+DTA+ LVTR AL Sbjct: 63 VAKIVRESGRAGSIAIPLVKSLKETVGLFNKDAAGFVHFGSTSQDVIDTALALVTRNALN 122 Query: 124 LVDGELDQLAHRLLDLSQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQLQAL 183 L++ ++ + LL L+ H PVLARTLMQPA VTS GLK WAAPL+RS +LQA Sbjct: 123 LIEADVHKAVAALLVLAGRHAADPVLARTLMQPASVTSFGLKCAGWAAPLVRSLQRLQAT 182 Query: 184 AERALQLQLGGAVGTLAVLGEKG----PAVAARMAAALGLKTPDAAWHTQRDEWIRLGTE 239 A AL +QLGGAVGTLA + + G P V A MA+ L L+ P AWHTQRDEW+ LG E Sbjct: 183 AGNALSVQLGGAVGTLAQMQKAGKNLGPQVIAHMASELKLRAPSCAWHTQRDEWVALGCE 242 Query: 240 MAVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAATRAP 299 + +L GSLGKIA D++LM Q E+ E+AEP+ GRGGSSAMPHKRNPV+ M+ALAAA RAP Sbjct: 243 LGLLVGSLGKIAKDIALMGQYEVGEVAEPTEPGRGGSSAMPHKRNPVACMVALAAAQRAP 302 Query: 300 QQAAALLAAMSQQHERGLGNWQAELAEWPGLFLGVHGALRALNDAFAALVIDEARMLRNI 359 Q+ AALLAAM Q+HER LGNWQAELAEWPGL + HG+ RA+ A L +D RM N+ Sbjct: 303 QRVAALLAAMPQEHERALGNWQAELAEWPGLLMSAHGSARAMAQALPGLQVDTQRMRANL 362 Query: 360 DALQGLVFAESA 371 DAL+ ++ AE+A Sbjct: 363 DALRAVLPAEAA 374 >ref|YP_004154611.1| 3-carboxy-cis,cis-muconate cycloisomerase [Variovorax paradoxus EPS] gb|ADU36500.1| 3-carboxy-cis,cis-muconate cycloisomerase [Variovorax paradoxus EPS] Length = 403 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 215/362 (59%), Positives = 270/362 (74%) Query: 3 VSIFDSFLTTSDMIAVFDDQAVVQAMLRFEQVLAEAEAAEGIIPEAAARAIASVCRAPLY 62 +SIF+ FL+TS+ + F D+A V AMLRFE LA A+AAEG+IPE+AA +I C+ L+ Sbjct: 1 MSIFEGFLSTSETLGAFSDRAFVDAMLRFEAALARAQAAEGLIPESAAHSIVGSCKVELF 60 Query: 63 DINALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTREAL 122 D+ ++ RAG++AIPLVK L+ V L++ EAA VH+GSTSQDV+D+AM LVTREA+ Sbjct: 61 DVAKIVRESGRAGSVAIPLVKALREAVGLFNAEAAPFVHFGSTSQDVIDSAMALVTREAV 120 Query: 123 RLVDGELDQLAHRLLDLSQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQLQA 182 LV+ +L + A LL L+ H +TP+LARTLMQPA VTS G K WAAPL+RSR +L+ Sbjct: 121 ALVETDLAKAADALLRLATQHAETPMLARTLMQPASVTSFGFKCAGWAAPLVRSRLRLRE 180 Query: 183 LAERALQLQLGGAVGTLAVLGEKGPAVAARMAAALGLKTPDAAWHTQRDEWIRLGTEMAV 242 A+ ALQLQLGGAVGTLA + +G AV RMA LGL P A WHTQRDEW+ LG E+ + Sbjct: 181 AAKHALQLQLGGAVGTLAQMKGQGAAVRKRMAKELGLGDPGATWHTQRDEWVALGCELGL 240 Query: 243 LAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAATRAPQQA 302 + GSLGKIA D++L+ Q E+AE+AEPS GRGGSSAMPHKRNPV+SM+A+AAA RAPQ+ Sbjct: 241 MTGSLGKIAVDIALLGQYEVAEVAEPSEPGRGGSSAMPHKRNPVASMVAIAAAHRAPQRV 300 Query: 303 AALLAAMSQQHERGLGNWQAELAEWPGLFLGVHGALRALNDAFAALVIDEARMLRNIDAL 362 AALL AM QQHER LG WQAELAEWP L + HG++RA+ A L +D ARM NID L Sbjct: 301 AALLGAMPQQHERALGAWQAELAEWPQLLMSAHGSVRAMAGALPGLQVDAARMRANIDRL 360 Query: 363 QG 364 + Sbjct: 361 RA 362 >ref|YP_981892.1| 3-carboxy-cis,cis-muconate cycloisomerase [Polaromonas naphthalenivorans CJ2] gb|ABM36971.1| 3-carboxy-cis,cis-muconate cycloisomerase [Polaromonas naphthalenivorans CJ2] Length = 404 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 206/368 (55%), Positives = 267/368 (72%) Query: 4 SIFDSFLTTSDMIAVFDDQAVVQAMLRFEQVLAEAEAAEGIIPEAAARAIASVCRAPLYD 63 SIF+ FL+TS++ F ++ + AMLRFE LA A+A G+IP+AAA++I C+ L+D Sbjct: 3 SIFEGFLSTSEIQEAFSERNFLDAMLRFEASLARAQARAGLIPQAAAQSIIGTCKVELFD 62 Query: 64 INALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTREALR 123 + ++ RAG++AIPLVK L+ TV L++++AA VH+G+TSQDV+DTA+VLVTR AL Sbjct: 63 VAKIVRESGRAGSVAIPLVKSLKETVGLFNKDAARFVHFGATSQDVIDTALVLVTRHALA 122 Query: 124 LVDGELDQLAHRLLDLSQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQLQAL 183 L++ ++ + LL L+ H PVLARTLMQPA VTS GLK WAAPL+RS +LQ Sbjct: 123 LIEADVHKSVAALLALAGRHAADPVLARTLMQPACVTSFGLKCAGWAAPLVRSLQRLQLS 182 Query: 184 AERALQLQLGGAVGTLAVLGEKGPAVAARMAAALGLKTPDAAWHTQRDEWIRLGTEMAVL 243 + AL LQLGGAVGTLA + ++GP V A MAA L LK P WHTQRDEW+ LG E+ +L Sbjct: 183 SANALSLQLGGAVGTLAEMKDRGPQVIALMAADLKLKPPLFCWHTQRDEWVALGCELGLL 242 Query: 244 AGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAATRAPQQAA 303 GSLGKIA D+SLM Q E+ E+AEPS GRGGS+AM HKRNPV+ M+ALAA+ RAPQ+ A Sbjct: 243 VGSLGKIARDISLMGQYEVGEVAEPSEAGRGGSTAMLHKRNPVACMVALAASARAPQRVA 302 Query: 304 ALLAAMSQQHERGLGNWQAELAEWPGLFLGVHGALRALNDAFAALVIDEARMLRNIDALQ 363 ALLAAM Q+HER LGNWQAELAEWPGL HG+ RA+ A L +D RM N+DA++ Sbjct: 303 ALLAAMPQEHERALGNWQAELAEWPGLLTSAHGSARAMAHALPGLQVDTQRMRANLDAVR 362 Query: 364 GLVFAESA 371 + ++A Sbjct: 363 AALPPQAA 370