BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5152.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777366.1| protocatechuate 3,4-dioxygenase subunit alph... 304 5e-81 ref|YP_004752731.1| protocatechuate 3,4-dioxygenase subunit alph... 203 1e-50 ref|YP_347003.1| protocatechuate 3,4-dioxygenase subunit alpha [... 120 2e-25 ref|YP_258450.1| protocatechuate 3,4-dioxygenase subunit alpha [... 116 2e-24 ref|YP_002871016.1| protocatechuate 3,4-dioxygenase alpha chain ... 116 2e-24 >ref|YP_003777366.1| protocatechuate 3,4-dioxygenase subunit alpha [Herbaspirillum seropedicae SmR1] gb|ADJ65458.1| protocatechuate 3,4-dioxygenase alpha chain protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 304 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 158/169 (93%), Positives = 162/169 (95%) Query: 31 MSNITTSQTIGPFPHEAWAWAVELTSRVESSAPQVKIKGAIIDGDGVPINDAWAEAWLPG 90 MSNITTSQTIGPFPHEAWAWAVELTSRV+SSAPQVKI GAI+DGDGVPINDAWAEAWLPG Sbjct: 1 MSNITTSQTIGPFPHEAWAWAVELTSRVDSSAPQVKINGAILDGDGVPINDAWAEAWLPG 60 Query: 91 SAAAETSHAIPGYRRVPTNEEGGFTFSISQPQAPAGKPVAYVTVFARGLVKHQFTAVFLE 150 SA E++HAIPGYRRVPTNEEGGF FSISQPQAPAGKPVAYVTVFARGLVKHQFTAVFLE Sbjct: 61 SAPVESAHAIPGYRRVPTNEEGGFAFSISQPQAPAGKPVAYVTVFARGLVKHQFTAVFLE 120 Query: 151 DDPALAQSALLEQVPADRRHTLIARKQADGSYLWNIHMQGASETVFFDY 199 DDPALAQSALLEQVPADRR TLIARKQ DGSYLWNIHMQGA ETVFFDY Sbjct: 121 DDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGARETVFFDY 169 >ref|YP_004752731.1| protocatechuate 3,4-dioxygenase subunit alpha [Collimonas fungivorans Ter331] gb|AEK61908.1| Protocatechuate 3,4-dioxygenase alpha chain [Collimonas fungivorans Ter331] Length = 172 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 1/169 (0%) Query: 32 SNITTSQTIGPFPHEAWAWAVELTSRVESSAPQVKIKGAIIDGDGVPINDAWAEAWLPGS 91 SNITTSQT+GPFPHEAWAWAV ++ + ++AP + I G + DGDG PIND W EAW+P + Sbjct: 3 SNITTSQTVGPFPHEAWAWAVSASATLHTTAPTITISGVLRDGDGAPINDGWVEAWMPDA 62 Query: 92 AAAETSHAIPGYRRVPTNEEGGFTFSISQPQ-APAGKPVAYVTVFARGLVKHQFTAVFLE 150 AAAET+ +PG+RR+ TN++G F +S P A GKPV + TVFARGLVKHQF+AVFLE Sbjct: 63 AAAETAQQLPGFRRIATNDDGAFRIEVSLPSPARFGKPVLFATVFARGLVKHQFSAVFLE 122 Query: 151 DDPALAQSALLEQVPADRRHTLIARKQADGSYLWNIHMQGASETVFFDY 199 DD LAQS +L QVPADRR TLIARKQ D Y W+I MQG ETVFFDY Sbjct: 123 DDSGLAQSEILSQVPADRRPTLIARKQGDARYHWDIWMQGDKETVFFDY 171 >ref|YP_347003.1| protocatechuate 3,4-dioxygenase subunit alpha [Pseudomonas fluorescens Pf0-1] gb|ABA73014.1| protocatechuate 3,4-dioxygenase alpha chain [Pseudomonas fluorescens Pf0-1] Length = 188 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 98/188 (52%), Gaps = 28/188 (14%) Query: 35 TTSQTIGPFPHEAWAW------AVELTSRVESSAPQVKIKGAIIDGDGVPINDAWAEAWL 88 TTS T+GP+ H W A ELT +V I G ++DG+G +NDA E W Sbjct: 6 TTSHTVGPYYHIGLTWLNRENLANELTL-----GQRVAITGQVVDGNGDVVNDAMLEVWQ 60 Query: 89 PGSAAA----ETSHAIP------GYRRVPTNEEGGFTFSISQPQAPAG------KPVAYV 132 +A E A P G+ RVP + +G F F+ +P G P V Sbjct: 61 ANAAGKYDHPEDEQAKPLDPNFEGFGRVPVDADGRFRFTTIKPGTVEGLKGTTQAPHLVV 120 Query: 133 TVFARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRHTLIARKQADGSYLWNIHMQGA- 191 VFARGLVKH T ++ E DPA LLE VPA+RR TL+A+ A G Y WN+ +QG Sbjct: 121 LVFARGLVKHLLTRIYFEGDPANVNDPLLECVPAERRDTLLAKPDAAGVYQWNVILQGTD 180 Query: 192 SETVFFDY 199 +ETVFFDY Sbjct: 181 AETVFFDY 188 >ref|YP_258450.1| protocatechuate 3,4-dioxygenase subunit alpha [Pseudomonas fluorescens Pf-5] gb|AAY90606.1| protocatechuate 3,4-dioxygenase, alpha subunit [Pseudomonas fluorescens Pf-5] Length = 188 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 73/184 (39%), Positives = 97/184 (52%), Gaps = 20/184 (10%) Query: 35 TTSQTIGPFPHEAWAWA-VELTSRVESSAPQVKIKGAIIDGDGVPINDAWAEAWLPGSAA 93 TTS T+GP+ H W E + + +V I G ++DG+G +NDA E W +AA Sbjct: 6 TTSHTVGPYYHIGLTWLNREDLTEEGTLGERVAITGQVVDGNGNFVNDAMLEVW-QANAA 64 Query: 94 AETSHA-----------IPGYRRVPTNEEGGFTFSISQPQAPAG------KPVAYVTVFA 136 + H G+ RVP + EG F F+ +P G P V VFA Sbjct: 65 GKYRHPEDDQDKPLDPNFQGFGRVPVDAEGRFRFTTIKPGTVPGLKGTTQAPHLVVLVFA 124 Query: 137 RGLVKHQFTAVFLEDDPALAQSALLEQVPADRRHTLIARKQADGSYLWNIHMQGA-SETV 195 RGLVKH T ++ E +PA A LL VP +RR TL+A+ ADG Y WN+ +QG +ETV Sbjct: 125 RGLVKHLLTRIYFEGEPANASDPLLACVPEERRGTLLAKADADGHYQWNVILQGTDAETV 184 Query: 196 FFDY 199 FFDY Sbjct: 185 FFDY 188 >ref|YP_002871016.1| protocatechuate 3,4-dioxygenase alpha chain [Pseudomonas fluorescens SBW25] emb|CAY47621.1| protocatechuate 3,4-dioxygenase alpha chain [Pseudomonas fluorescens SBW25] Length = 188 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 73/186 (39%), Positives = 96/186 (51%), Gaps = 20/186 (10%) Query: 33 NITTSQTIGPFPHEAWAWAVELTSRVESS-APQVKIKGAIIDGDGVPINDAWAEAWLPGS 91 N TTS T+GP+ H W V ++ +V I G ++DG+G +NDA E W + Sbjct: 4 NATTSHTVGPYYHIGLTWLNREDLTVAATLGERVAISGQVVDGNGDVVNDAMLEVW-QAN 62 Query: 92 AAAETSHA-----------IPGYRRVPTNEEGGFTFSISQPQAPAG------KPVAYVTV 134 AA + H G+ RVP + EG F F+ +P A G P V V Sbjct: 63 AAGKYDHPEDDQDKALDPNFEGFGRVPVDAEGRFRFTTIKPGAVPGLKGTTQAPHLVVLV 122 Query: 135 FARGLVKHQFTAVFLEDDPALAQSALLEQVPADRRHTLIARKQADGSYLWNIHMQGA-SE 193 FARGLVKH T ++ E + LL VPA+RR TLIA+ ADG + WN+ +QG E Sbjct: 123 FARGLVKHLLTRIYFEGEALNGDDPLLACVPAERRGTLIAKTDADGVHQWNVILQGTDKE 182 Query: 194 TVFFDY 199 TVFFDY Sbjct: 183 TVFFDY 188