BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5151.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777365.1| protocatechuate 3,4-dioxygenase beta chain p... 461 e-128 ref|YP_004752732.1| protocatechuate 3,4-dioxygenase subunit beta... 396 e-108 ref|YP_002908827.1| protocatechuate 3,4-dioxygenase subunit beta... 284 7e-75 ref|YP_001024070.1| protocatechuate 3,4-dioxygenase, beta subuni... 281 5e-74 ref|ZP_02381815.1| protocatechuate 3,4-dioxygenase, beta subunit... 281 7e-74 >ref|YP_003777365.1| protocatechuate 3,4-dioxygenase beta chain protein [Herbaspirillum seropedicae SmR1] gb|ADJ65457.1| protocatechuate 3,4-dioxygenase beta chain protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 225/230 (97%), Positives = 226/230 (98%) Query: 1 MQFDAIEPGVYPELIYPPYKSTAKRGPTQAPLRVRDETATNTNLFASPKLILPHDMDLTA 60 MQFDAIEPGVYPELIYPPYKST KRGPTQAPLRVRDE AT TNLFASPKLILPHDMDLT Sbjct: 1 MQFDAIEPGVYPELIYPPYKSTVKRGPTQAPLRVRDEIATGTNLFASPKLILPHDMDLTK 60 Query: 61 QGKGEPLGEKIVVTGRVLDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG 120 QGKGEPLGEKIVVTGRV+DEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG Sbjct: 61 QGKGEPLGEKIVVTGRVVDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG 120 Query: 121 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA 180 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA Sbjct: 121 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA 180 Query: 181 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI 230 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI Sbjct: 181 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI 230 >ref|YP_004752732.1| protocatechuate 3,4-dioxygenase subunit beta [Collimonas fungivorans Ter331] gb|AEK61909.1| Protocatechuate 3,4-dioxygenase beta chain [Collimonas fungivorans Ter331] Length = 230 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 188/230 (81%), Positives = 208/230 (90%) Query: 1 MQFDAIEPGVYPELIYPPYKSTAKRGPTQAPLRVRDETATNTNLFASPKLILPHDMDLTA 60 M+F++ E GVYP LIYPPY ST KRGPT+ PLR+R N+ ASP LILPHD DLT Sbjct: 1 MRFESTETGVYPSLIYPPYLSTVKRGPTREPLRIRAAEPVQANITASPSLILPHDTDLTR 60 Query: 61 QGKGEPLGEKIVVTGRVLDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFG 120 G+GEPLGEKIVVTGRVLDEDGKPVRNSLLEVWQCN+AGRY+HK+DQHDAPLDPNF GFG Sbjct: 61 HGQGEPLGEKIVVTGRVLDEDGKPVRNSLLEVWQCNSAGRYWHKRDQHDAPLDPNFFGFG 120 Query: 121 KMLTDDNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFA 180 KMLTDD+GRYRFV+IKPGPYPWGNHHKAWRPAHIHFSLFG+VYAQRLVTQMYFP+DPLF Sbjct: 121 KMLTDDDGRYRFVTIKPGPYPWGNHHKAWRPAHIHFSLFGSVYAQRLVTQMYFPSDPLFD 180 Query: 181 YDPIFQSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPMGI 230 YDPIFQSIPD AARQRLI+RFSLE+T+DD+MLGYEFDIVLRGR+ATPM + Sbjct: 181 YDPIFQSIPDLAARQRLIARFSLEQTIDDQMLGYEFDIVLRGRDATPMSL 230 >ref|YP_002908827.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia glumae BGR1] gb|ACR31592.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia glumae BGR1] Length = 234 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 146/223 (65%), Positives = 170/223 (76%), Gaps = 9/223 (4%) Query: 11 YPELIYPPYKSTAKRGPTQ--APLR--VRDETATNTNLFASPKL-ILPHDMDLTAQGKGE 65 +P ++P Y+S+ KRGPTQ PLR +RD+ ++ S L L HD+ A GE Sbjct: 14 HPAYVHPDYRSSVKRGPTQPLVPLRERLRDQRVP---VYGSDDLGALDHDLTRNAMKNGE 70 Query: 66 PLGEKIVVTGRVLDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTD 125 PLGE+I+VTGRVLDE GKPVRN+L+EVWQ NAAGRY HK D+HDAPLDPNF G G+ LTD Sbjct: 71 PLGERIIVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKADRHDAPLDPNFLGAGRCLTD 130 Query: 126 DNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIF 185 D GRYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL YDPIF Sbjct: 131 DQGRYRFLTIKPGAYPWGNHTNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLQYDPIF 190 Query: 186 QSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 Q P EAAR+RL+SRFSLE T + LGYEFDIVLRGR+ATPM Sbjct: 191 QGTP-EAARERLVSRFSLEVTEESYALGYEFDIVLRGRDATPM 232 >ref|YP_001024070.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei NCTC 10229] ref|YP_001062840.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia pseudomallei 668] ref|YP_001078536.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia mallei NCTC 10247] ref|YP_001075794.1| protocatechuate 3,4-dioxygenase subunit beta [Burkholderia pseudomallei 1106a] ref|ZP_03450441.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei 576] ref|ZP_00441043.2| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei GB8 horse 4] ref|ZP_02268920.2| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei PRL-20] ref|ZP_04880704.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei ATCC 10399] ref|ZP_04897661.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04899822.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei S13] ref|ZP_04906820.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei FMH] ref|ZP_04910833.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei JHU] ref|ZP_04969252.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei 406e] ref|ZP_04972986.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei 2002721280] gb|ABM98713.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei NCTC 10229] gb|ABN86407.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei 668] gb|ABN94187.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei 1106a] gb|ABO02270.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei NCTC 10247] gb|EDK55142.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei FMH] gb|EDK61130.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei JHU] gb|EDK83861.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei 2002721280] gb|EDO88726.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei 406e] gb|EDO94499.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gb|EDP85058.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei ATCC 10399] gb|EDS82834.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei S13] gb|EEC38253.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia pseudomallei 576] gb|EEP86839.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei GB8 horse 4] gb|EES43465.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia mallei PRL-20] Length = 244 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 146/221 (66%), Positives = 169/221 (76%), Gaps = 5/221 (2%) Query: 11 YPELIYPPYKSTAKRGPTQAPLRVRDETATNTN--LFASPKL-ILPHDMDLTAQGKGEPL 67 +P I+PPY+S+ KRGPTQ PL ET N + ++ + L L HD+ A GEPL Sbjct: 24 HPAYIHPPYRSSVKRGPTQ-PLIPLKETLRNQHAPVYGADDLGALDHDLTKNAAKNGEPL 82 Query: 68 GEKIVVTGRVLDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTDDN 127 GE+IVVTGRVLDE GKPVR++L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ LTD N Sbjct: 83 GERIVVTGRVLDEGGKPVRDTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCLTDAN 142 Query: 128 GRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIFQS 187 GRYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL A DPIFQ Sbjct: 143 GRYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLALDPIFQG 202 Query: 188 IPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 P E AR+RLISRFS++ T + LGYEFDIVLRGR+ATPM Sbjct: 203 TP-EDARERLISRFSIDTTEEGFALGYEFDIVLRGRDATPM 242 >ref|ZP_02381815.1| protocatechuate 3,4-dioxygenase, beta subunit [Burkholderia ubonensis Bu] Length = 235 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 148/223 (66%), Positives = 171/223 (76%), Gaps = 9/223 (4%) Query: 11 YPELIYPPYKSTAKRGPTQA--PLR--VRDETATNTNLFASPKL-ILPHDMDLTAQGKGE 65 +P I+P Y+S+ KRGPT+ PL+ +RD+ A ++ + L L HD+ A GE Sbjct: 15 HPAYIHPEYRSSVKRGPTRPLIPLKEKLRDQYAP---VYGAEDLGALDHDLTKNAVKNGE 71 Query: 66 PLGEKIVVTGRVLDEDGKPVRNSLLEVWQCNAAGRYFHKKDQHDAPLDPNFTGFGKMLTD 125 PLGE+IVVTGRVLDE GKPVRN+L+EVWQ NAAGRY HK DQHDAPLDPNF G G+ LTD Sbjct: 72 PLGERIVVTGRVLDEGGKPVRNTLVEVWQANAAGRYVHKVDQHDAPLDPNFLGAGRCLTD 131 Query: 126 DNGRYRFVSIKPGPYPWGNHHKAWRPAHIHFSLFGNVYAQRLVTQMYFPNDPLFAYDPIF 185 D GRYRF++IKPG YPWGNH AWRP HIHFSLFG+ + RLVTQMYFP DPL AYDPIF Sbjct: 132 DEGRYRFLTIKPGAYPWGNHPNAWRPNHIHFSLFGDYFGSRLVTQMYFPGDPLLAYDPIF 191 Query: 186 QSIPDEAARQRLISRFSLEETVDDKMLGYEFDIVLRGRNATPM 228 Q P EAAR RLISRFSL+ T + LGYEFDIVLRGR+ATPM Sbjct: 192 QGTP-EAARDRLISRFSLDITEEGYALGYEFDIVLRGRDATPM 233