BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5150.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777364.1| transcription regulator protein [Herbaspiril... 460 e-127 ref|XP_002540298.1| Pca regulon regulatory protein, putative [Ri... 398 e-109 ref|YP_004752733.1| Pca regulon regulatory protein [Collimonas f... 377 e-102 ref|YP_001789480.1| IclR family transcriptional regulator [Lepto... 282 4e-74 ref|ZP_07473467.1| beta-ketoadipate pathway transcriptional regu... 226 3e-57 >ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65456.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 256/266 (96%), Positives = 258/266 (96%), Gaps = 1/266 (0%) Query: 24 MQQEHIEEAEEGAD-GPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR 82 MQ+E I+E AD GPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR Sbjct: 1 MQEERIDEEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR 60 Query: 83 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG 142 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG Sbjct: 61 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG 120 Query: 143 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEA 202 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEA Sbjct: 121 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEA 180 Query: 203 ITAHTITDVERLGLEIARARAQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAA 262 ITAHTITDVERLGLEIARAR QGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHA Sbjct: 181 ITAHTITDVERLGLEIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAG 240 Query: 263 RMKLEDMVERCLPAMLKIQVELGALL 288 RMKLEDMVERCLPAMLKIQVELGALL Sbjct: 241 RMKLEDMVERCLPAMLKIQVELGALL 266 >ref|XP_002540298.1| Pca regulon regulatory protein, putative [Ricinus communis] gb|EEF22085.1| Pca regulon regulatory protein, putative [Ricinus communis] Length = 256 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 216/251 (86%), Positives = 230/251 (91%) Query: 37 DGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRH 96 D P +RD+VAGLEKGLQVI AFDQERSRLTIAEVA TGLTRAAARRYLITLTHLGYMRH Sbjct: 6 DPPAQRDIVAGLEKGLQVIAAFDQERSRLTIAEVADRTGLTRAAARRYLITLTHLGYMRH 65 Query: 97 DNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVS 156 +NK F+LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYS+GEAAS GVLDHDQLVCVAAVS Sbjct: 66 ENKQFALTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSVGEAASAGVLDHDQLVCVAAVS 125 Query: 157 AGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGL 216 AGQLVS TLQPGTRVPAYCTANGR+LLA+LPPAQLDA LARA PE IT HTI + ERL + Sbjct: 126 AGQLVSVTLQPGTRVPAYCTANGRVLLAHLPPAQLDAFLARADPERITEHTIVNRERLAM 185 Query: 217 EIARARAQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPA 276 EIAR R QGYALVDQELELGLRT+AVP++NFRGEVVAAMNISVHA RM LE MVERCLPA Sbjct: 186 EIARTRVQGYALVDQELELGLRTIAVPLKNFRGEVVAAMNISVHAGRMPLEQMVERCLPA 245 Query: 277 MLKIQVELGAL 287 ++KIQVEL AL Sbjct: 246 LIKIQVELNAL 256 >ref|YP_004752733.1| Pca regulon regulatory protein [Collimonas fungivorans Ter331] gb|AEK61910.1| Pca regulon regulatory protein [Collimonas fungivorans Ter331] Length = 293 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 204/253 (80%), Positives = 228/253 (90%) Query: 36 ADGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMR 95 ++ PLKRDL+AGLEKGL VIEAFDQERSRLTI+EVAQ GLTRAAARRYLITLTHLGY+R Sbjct: 41 SEEPLKRDLIAGLEKGLLVIEAFDQERSRLTISEVAQRAGLTRAAARRYLITLTHLGYVR 100 Query: 96 HDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAV 155 H+ K FSLTP VLRLGQSYLHSARLPRIVQPLLYRLAYSL EAAS GVLDHD+LVCVAAV Sbjct: 101 HEQKVFSLTPKVLRLGQSYLHSARLPRIVQPLLYRLAYSLEEAASAGVLDHDELVCVAAV 160 Query: 156 SAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLG 215 SAG+LVS TLQPGTRVPA+CTANGR+LLA+LP AQ+++ L R Q E ITAHTI + ERL Sbjct: 161 SAGRLVSATLQPGTRVPAFCTANGRVLLASLPQAQIESFLERLQLEPITAHTIVNKERLL 220 Query: 216 LEIARARAQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLP 275 LEI R RAQGYA+VDQELELGLRT+AVP++NFRGE VAA+N+SVHAARM +ED+VERCLP Sbjct: 221 LEITRTRAQGYAVVDQELELGLRTIAVPLKNFRGETVAAVNVSVHAARMAVEDIVERCLP 280 Query: 276 AMLKIQVELGALL 288 A+LK QVEL ALL Sbjct: 281 ALLKAQVELTALL 293 >ref|YP_001789480.1| IclR family transcriptional regulator [Leptothrix cholodnii SP-6] gb|ACB32715.1| transcriptional regulator, IclR family [Leptothrix cholodnii SP-6] Length = 267 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 156/243 (64%), Positives = 193/243 (79%) Query: 42 RDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTF 101 RD VA L+ GL VIEAFDQ+R RL+I+EVAQ GLTRAAARR+L+TLT LGY R D + F Sbjct: 21 RDFVAALQSGLLVIEAFDQDRPRLSISEVAQRAGLTRAAARRHLLTLTALGYARQDGRLF 80 Query: 102 SLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLV 161 +LTP VLR GQSY+HSARLPR++QP L RLA +L EA+S GVLDHD ++ +AA +AG++V Sbjct: 81 ALTPKVLRFGQSYMHSARLPRLLQPQLTRLALTLQEASSAGVLDHDDVIALAAATAGRVV 140 Query: 162 STTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARA 221 S TLQPGTRVPA+CTANGR+LLA LP L LAR +T TIT ERL LEI R Sbjct: 141 SATLQPGTRVPAWCTANGRVLLAALPNDALTDFLARQVMLPLTPQTITQPERLRLEIERV 200 Query: 222 RAQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLKIQ 281 R +GYALVDQELE GLRT++VP+RN+RG+V+AA+NIS HA RM+ E+++ERCLP +L++Q Sbjct: 201 RVRGYALVDQELEPGLRTLSVPLRNYRGDVLAALNISAHAGRMRSEELLERCLPMLLEVQ 260 Query: 282 VEL 284 L Sbjct: 261 AHL 263 >ref|ZP_07473467.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Brucella sp. BO2] gb|EFM60535.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family [Brucella sp. BO2] Length = 251 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 172/246 (69%) Query: 43 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 102 D V G KGL+VIEAF ++R RL+IA+V+++TGL RA ARR L+TL LGY +D K F Sbjct: 5 DFVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDGKFFM 64 Query: 103 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 162 L P +LRLG +YL LP I+QP L RL+ S+GE+AS VLD ++V +A S +++S Sbjct: 65 LLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQMRVIS 124 Query: 163 TTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARAR 222 L G+R+PAYC + GR+LLA L ++ IL + + +A T T TD+E+L E+ R R Sbjct: 125 INLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELQARTPFTQTDLEKLMEELRRIR 184 Query: 223 AQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLKIQV 282 AQG+A+ DQELELGLR++AVPV N RG VVAA+NI A +++ D+V R LP MLKIQ Sbjct: 185 AQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGRILPEMLKIQS 244 Query: 283 ELGALL 288 EL ++L Sbjct: 245 ELRSML 250