BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5149.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777363.1| AraC family transcription regulator protein ... 574 e-162 ref|YP_004751148.1| putative transcriptional regulator [Collimon... 382 e-104 ref|YP_001238755.1| AraC family transcriptional regulator [Brady... 221 1e-55 ref|YP_001204418.1| AraC/XylS family transcription factor [Brady... 214 1e-53 ref|YP_001990215.1| AraC family transcriptional regulator [Rhodo... 202 5e-50 >ref|YP_003777363.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65455.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 291/303 (96%), Positives = 299/303 (98%) Query: 13 MPLPRSKPRTSDVPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLF 72 MPLPRSKPRTSDVPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLF Sbjct: 1 MPLPRSKPRTSDVPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLF 60 Query: 73 LMSGHVSALMEEEVWEVDGPVVITIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGGSEGH 132 LMSGHVSALMEE+VWE DGPVV+TIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAG EGH Sbjct: 61 LMSGHVSALMEEQVWEYDGPVVLTIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGAGEGH 120 Query: 133 GELFSPLFLRPMAIQLGRVPELRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLV 192 GELFSPLFLRPMAI+LGR P+LRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLV Sbjct: 121 GELFSPLFLRPMAIELGRAPDLRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLV 180 Query: 193 RLEADHRSAELSGRGDFELFSRFRALVEQHFKEQWQVAVYADKLRITPSRLNRLCLKLAG 252 RLEADHRSAEL+GRGDFELFSRFRALVEQHFK+QWQVAVYADKLRITPSRLNRLCLKLAG Sbjct: 181 RLEADHRSAELTGRGDFELFSRFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAG 240 Query: 253 HSAFDLAQQRLILEACRKLTYVPSGISTIAYELGFQDPAYFSRLFKRHMGVTPKEYRRTH 312 HSAFDLAQQRLILEACRKLTYVPSG++TIAYELGFQDPAYFSRLFKRHMGVTPKEYRRTH Sbjct: 241 HSAFDLAQQRLILEACRKLTYVPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYRRTH 300 Query: 313 VEE 315 VEE Sbjct: 301 VEE 303 >ref|YP_004751148.1| putative transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60325.1| putative transcriptional regulator, AraC/XylS family [Collimonas fungivorans Ter331] Length = 375 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 197/292 (67%), Positives = 238/292 (81%), Gaps = 1/292 (0%) Query: 19 KPRTSDVPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGHV 78 K D+PQF+LYGE + E+AE VHIELIETRSR+HDWHI HTH GLFQ+LFL GHV Sbjct: 75 KTVNGDIPQFTLYGENAAAENAEFVHIELIETRSRLHDWHIQSHTHRGLFQILFLFGGHV 134 Query: 79 SALMEEEVWEVDGPVVITIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGGSEGHGELFSP 138 A ++ +WE +GPV ITIHPS+VHGFDFS +A GFVLTVD +++F A H LFS Sbjct: 135 RAEIDAGLWECEGPVAITIHPSVVHGFDFSREAQGFVLTVDQNLLF-ADKLGVHATLFST 193 Query: 139 LFLRPMAIQLGRVPELRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLVRLEADH 198 +F+ P+AI L V + R+R+ETLL+ L+ ES+ PR GHTLMLEWLARSV+LLLVRL +DH Sbjct: 194 IFVEPLAIALSAVDDSRQRIETLLKQLMTESSWPRAGHTLMLEWLARSVLLLLVRLHSDH 253 Query: 199 RSAELSGRGDFELFSRFRALVEQHFKEQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDL 258 RSA+ SGR DFELFSRFR LVE+H+KEQWQV+ A +LR+T SRLNRLCL+LAG SAFDL Sbjct: 254 RSADRSGRQDFELFSRFRGLVEEHYKEQWQVSRVAGRLRVTESRLNRLCLRLAGKSAFDL 313 Query: 259 AQQRLILEACRKLTYVPSGISTIAYELGFQDPAYFSRLFKRHMGVTPKEYRR 310 QQRL+LEA RKLTYVPSG+++IAYELGFQDPAYFSR FKRH G+TPK++R+ Sbjct: 314 MQQRLMLEARRKLTYVPSGVASIAYELGFQDPAYFSRAFKRHTGMTPKQFRQ 365 >ref|YP_001238755.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ34849.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 127/298 (42%), Positives = 169/298 (56%), Gaps = 5/298 (1%) Query: 13 MPLPRSKPRTSDVPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLF 72 MP R+KP +P F+LYGEAS + + +HIE I+ RSR++ W I HTH GL Q+L+ Sbjct: 1 MPRFRTKP---SIPAFALYGEASAAQ-PDMLHIEPIQVRSRLYRWEIEAHTHQGLHQILW 56 Query: 73 LMSGHVSALMEEEVWEVDGPVVITIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGGSEGH 132 + SG ++E GPV + I P +VH F FS + GFVLT +P V G Sbjct: 57 VGSGPAEIALDESRERCTGPVAVIIPPGVVHAFRFSRETDGFVLTFNPRAVVE-GDVPAT 115 Query: 133 GELFSPLFLRPMAIQLGRVPELRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLV 192 GE LF P + L R+ LL L E AA + + + WL RS++ L Sbjct: 116 GEALRDLFATPQILHLEPKAVATGRIGALLVDLADEFAAADSAASPVPHWLGRSIVWRLA 175 Query: 193 RLEADHRSAELSGRGDFELFSRFRALVEQHFKEQWQVAVYADKLRITPSRLNRLCLKLAG 252 + A G G LF+RF LVE H ++ W VA YAD+L +TP RLNRL G Sbjct: 176 QQSARQSQGARRGSGHAALFTRFIVLVEAHHRDHWSVARYADELGMTPERLNRLTRAETG 235 Query: 253 HSAFDLAQQRLILEACRKLTYVPSGISTIAYELGFQDPAYFSRLFKRHMGVTPKEYRR 310 SA D+ RL EACR+LTY+ + +S +A+ELGF+DPAYF R FKRH G +P++YRR Sbjct: 236 QSALDIVHARLAREACRRLTYIAAPVSKLAFELGFKDPAYFCRFFKRHTGASPRDYRR 293 >ref|YP_001204418.1| AraC/XylS family transcription factor [Bradyrhizobium sp. ORS 278] emb|CAL76181.1| putative transcriptional regulator, AraC/XylS family [Bradyrhizobium sp. ORS 278] Length = 306 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 127/305 (41%), Positives = 171/305 (56%), Gaps = 19/305 (6%) Query: 13 MPLPRSKPRTSDVPQFSLYGEASRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLF 72 MP R+KP +P F+LYGEAS + + +HIE I+ RS+++ W I HTH GL Q+L+ Sbjct: 1 MPRFRTKP---SIPAFALYGEASAAQ-PDMLHIEPIQVRSKLYRWEIEAHTHQGLHQILW 56 Query: 73 LMSGHVSALMEEEVWEVDGPVVITIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGGSEGH 132 + +G ++E GPV + I P +VH F FS + GFVLT +P V G Sbjct: 57 VAAGPAEIALDERRERCSGPVAVIIPPGVVHAFRFSRETDGFVLTFNPRAVVE-GDVPAT 115 Query: 133 GELFSPLF-------LRPMAIQLGRVPELRERMETLLRLLIAESAAPRTGHTLMLEWLAR 185 GE LF L P A+ GR+ L + A+SAA H WL R Sbjct: 116 GEALRDLFATAQILHLEPQAVATGRIAALFVDLAD--EFGAADSAASPVPH-----WLGR 168 Query: 186 SVMLLLVRLEADHRSAELSGRGDFELFSRFRALVEQHFKEQWQVAVYADKLRITPSRLNR 245 S++ L + A G G +LF+RF LVE H ++ W VA YAD+L +TP RLNR Sbjct: 169 SIVWRLAQQSARLSQGGRRGSGHADLFTRFIVLVEAHHRDHWSVARYADELGMTPERLNR 228 Query: 246 LCLKLAGHSAFDLAQQRLILEACRKLTYVPSGISTIAYELGFQDPAYFSRLFKRHMGVTP 305 L G SA D+ RL EACR+LTY+ + +S +A+ELGF+DPAYF R FKRH G +P Sbjct: 229 LTRTETGQSALDIVHARLAREACRRLTYIAAPVSKLAFELGFKDPAYFCRFFKRHTGASP 288 Query: 306 KEYRR 310 ++YRR Sbjct: 289 RDYRR 293 >ref|YP_001990215.1| AraC family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACE99739.1| transcriptional regulator, AraC family [Rhodopseudomonas palustris TIE-1] Length = 296 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 7/296 (2%) Query: 21 RTSDVPQFSLYGEA-SRPEDAESVHIELIETRSRVHDWHIAPHTHAGLFQVLFLMSGHVS 79 R + +P F+LYGE + P D +H+E I++RSR++ W I H H L Q+L++ SG + Sbjct: 6 RKAAIPIFALYGETPAAPVDM--LHVEAIQSRSRLYQWEIDVHAHRSLHQILWIGSGTAT 63 Query: 80 ALMEEEVWEVDGPVVITIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGGSEGHGELFSPL 139 ++E+ + DGPV + + P +VHGF FS G V T +PH + G G+ L Sbjct: 64 IALDEQRVQRDGPVAVIVPPGVVHGFKFSPHTEGQVFTFNPHAMIE-GDVPATGQALRDL 122 Query: 140 FLRPMAIQLGRVPELRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLVRLEADHR 199 F ++ R++ L L E A P G++ + WL R+++ L + R Sbjct: 123 FAAARILEFEPDGAATMRIDRLFAELADEFATPDAGNSPVPLWLGRAIVWRLA--QQSER 180 Query: 200 SAELSGRGDFELFSRFRALVEQHFKEQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDLA 259 A + RG + F+RF LVE H E W +A YAD+L +TP RLNRL G SA D+ Sbjct: 181 QARYAARGG-DQFTRFLLLVETHHCEHWPIARYADELGMTPERLNRLAKAETGQSALDVV 239 Query: 260 QQRLILEACRKLTYVPSGISTIAYELGFQDPAYFSRLFKRHMGVTPKEYRRTHVEE 315 RL EACR+LTY+ + IS +A+ELGF+DPAYF R FKR G +P++YRR EE Sbjct: 240 HARLTREACRRLTYIAAPISKLAFELGFEDPAYFCRFFKRRTGQSPRDYRRVVSEE 295