BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5147.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777361.1| CAAX protease family protein [Herbaspirillum... 348 4e-94 ref|YP_004750717.1| Abortive infection protein [Collimonas fungi... 152 6e-35 ref|YP_003979538.1| CAAX amino terminal protease family protein ... 115 5e-24 ref|YP_111024.1| hypothetical protein BPSS1018 [Burkholderia pse... 109 5e-22 ref|YP_105838.1| CAAX protease family protein [Burkholderia mall... 108 8e-22 >ref|YP_003777361.1| CAAX protease family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65453.1| CAAX protease family (abortive protein) protein [Herbaspirillum seropedicae SmR1] Length = 342 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 220/286 (76%), Positives = 243/286 (84%), Gaps = 1/286 (0%) Query: 1 MSSALLLMLAICSVWLPALPLPAGRSLAPWLPLLGLALALGLHDGQLDAIAVAGIVLLGY 60 M S ++LMLAIC+VWLPAL L S+ PW+PLL LA+ +G DGQL A+AV GIV+LG Sbjct: 58 MPSFIVLMLAICAVWLPALRL-TRLSVPPWMPLLLLAVTMGWLDGQLKAVAVLGIVVLGT 116 Query: 61 AARGTTHAPHAWQRRSLLALTLLLALLLALHRWPGFHNVLVIPSAAITADARPFMLFANL 120 A G+THA HAWQRR LL L LLLALL+ALHRWPGF N LV+P ITADARPFML+AN Sbjct: 117 LAWGSTHALHAWQRRCLLMLALLLALLMALHRWPGFINTLVVPPTHITADARPFMLYANF 176 Query: 121 DKGSAGLLLLALLAPRCHAWREWRESIARTLLPGIATIVLVMGVGWLTGMVKPALKWPVF 180 DKG AGLLLLALLAPRCHAWREW+ ++ TLLPG+ TI LVMG+GWL G++ P LKWP F Sbjct: 177 DKGVAGLLLLALLAPRCHAWREWQGALRLTLLPGLVTIALVMGLGWLIGLISPNLKWPGF 236 Query: 181 TVEFLAINLLLTVVAEEAFFRGVIQQRLQQAWQGLRGGAVLALILSAVLFGAAHLGGGLA 240 T FLAINLLLTVVAEEAFFRGV+Q RLQQAWQGLRGGAVLALILSAVLFGAAHLGGGLA Sbjct: 237 TPPFLAINLLLTVVAEEAFFRGVLQHRLQQAWQGLRGGAVLALILSAVLFGAAHLGGGLA 296 Query: 241 YAALATVAGAGYGWVFQRTGRIEAPILLHFTLNAVHFLAFTYPALA 286 YAALATVAGAGYGWVFQRTGRIEA I+LHF LNAVHF+ FTYPALA Sbjct: 297 YAALATVAGAGYGWVFQRTGRIEAAIVLHFALNAVHFIGFTYPALA 342 >ref|YP_004750717.1| Abortive infection protein [Collimonas fungivorans Ter331] gb|AEK59894.1| Abortive infection protein [Collimonas fungivorans Ter331] Length = 286 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 124/285 (43%), Positives = 165/285 (57%), Gaps = 9/285 (3%) Query: 5 LLLMLAICSVWLPALPLPAGRSLAPWLPLLGLALALGLHDGQLDAIAVAGIVLLGYAARG 64 +LL AI +VWL L L L PW+ + AL GL L +AV + L AA Sbjct: 6 VLLAAAIAAVWLKPLRLTDRIVLLPWMAIAACALVSGLAGAVLSLLAVLELALFCLAAYL 65 Query: 65 TTHAPHAWQRRSLLAL----TLLLALLLALHRWPGFHNVLVIPSAAITADARPFMLFANL 120 A RR+L L +LAL LALH+ PGF+N +++ ++AD+ PF +AN Sbjct: 66 AATA-----RRNLRLLFGVAAAILALALALHKLPGFNNPILLLQLRLSADSAPFTQYANF 120 Query: 121 DKGSAGLLLLALLAPRCHAWREWRESIARTLLPGIATIVLVMGVGWLTGMVKPALKWPVF 180 DKG+AGL+LLA L R + +WR+ + +T + V V+ + G VKP K Sbjct: 121 DKGAAGLVLLAFLCARAESAADWRKLLRQTWPIALIAAVAVLSLATAIGYVKPDFKISQA 180 Query: 181 TVEFLAINLLLTVVAEEAFFRGVIQQRLQQAWQGLRGGAVLALILSAVLFGAAHLGGGLA 240 T FL+ NL TVVAEEAFFRG++Q RL + R G +LA+ SA+LFGAAH+ GG Sbjct: 181 TALFLSTNLFFTVVAEEAFFRGLLQDRLALSLARFRYGPLLAVACSALLFGAAHIAGGGT 240 Query: 241 YAALATVAGAGYGWVFQRTGRIEAPILLHFTLNAVHFLAFTYPAL 285 Y LATVAG Y + + T RIEA I++HF +NAVHF+ FTYP L Sbjct: 241 YVLLATVAGLAYAYAYYVTQRIEAAIIVHFAVNAVHFIGFTYPHL 285 >ref|YP_003979538.1| CAAX amino terminal protease family protein 1 [Achromobacter xylosoxidans A8] gb|ADP16823.1| CAAX amino terminal protease family protein 1 [Achromobacter xylosoxidans A8] Length = 282 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 130/243 (53%), Gaps = 2/243 (0%) Query: 44 DGQLDAIAVAGIVLLGYAARGTTHAPHAWQRRSLLALTLLLALLLALHRWPGFHNVLVIP 103 +G +D +A+A LL A A +A R + L + LA LL LHR PGFHN VI Sbjct: 40 EGTIDPVALAWPALLILAGVLVQSASNATTRAAGHTLFIALAALLFLHRLPGFHNPQVIA 99 Query: 104 SAAITADARPFMLFANLDKGSAGLLLLALLAPRCHAWREWRESIARTLLPGIATIVLVMG 163 A +T DA PF ++ NLDK ++ +AP A ++R +++ L A + + +G Sbjct: 100 PAPLTPDAVPFGMYLNLDKPLVAFWVVLAMAPPM-AGADFRATLSSAFLACAAAVAVCLG 158 Query: 164 VGWLTGMVKPALKWPVFTVEFLAINLLLTVVAEEAFFRGVIQQRLQQAWQGLRGGAVLAL 223 +V KWP +L N LL +AEEA FRG +QQRL W G G AL Sbjct: 159 CALALDVVGWTPKWPPSGWIWLINNALLVTLAEEALFRGYLQQRLTDLWSGRNWGPWAAL 218 Query: 224 ILSAVLFGAAHLGGGLAYAALATVAGAGYGWVFQRTGRIEAPILLHFTLNAVHFLAFTYP 283 I++AVLFG AH GG + LA +AGA YG + R G + A +L H LNA HF FTYP Sbjct: 219 IIAAVLFGLAHYAGGWQWMLLAGLAGAAYGLAY-RYGGLAAAVLAHLGLNAAHFGLFTYP 277 Query: 284 ALA 286 A Sbjct: 278 MRA 280 >ref|YP_111024.1| hypothetical protein BPSS1018 [Burkholderia pseudomallei K96243] ref|YP_335170.1| CAAX protease family protein [Burkholderia pseudomallei 1710b] ref|YP_001024252.1| CAAX protease family protein [Burkholderia mallei NCTC 10229] ref|YP_001062490.1| caax protease family protein [Burkholderia pseudomallei 668] ref|YP_001078336.1| CAAX protease family protein [Burkholderia mallei NCTC 10247] ref|YP_001075442.1| CAAX protease family protein [Burkholderia pseudomallei 1106a] ref|ZP_01770055.1| CAAX protease family protein [Burkholderia pseudomallei 305] ref|ZP_04810381.1| CAAX protease family protein [Burkholderia pseudomallei 1106b] ref|ZP_04880824.1| CAAX protease family protein [Burkholderia mallei ATCC 10399] ref|ZP_04890096.1| CAAX protease family protein [Burkholderia pseudomallei 1655] ref|ZP_04899630.1| CAAX protease family protein [Burkholderia pseudomallei S13] ref|ZP_04955088.1| CAAX protease family protein [Burkholderia pseudomallei 1710a] emb|CAH38479.1| putative membrane protein [Burkholderia pseudomallei K96243] gb|ABA51573.1| CAAX protease family protein [Burkholderia pseudomallei 1710b] gb|ABM98718.1| CAAX protease family protein [Burkholderia mallei NCTC 10229] gb|ABN86826.1| CAAX protease family protein [Burkholderia pseudomallei 668] gb|ABN95606.1| CAAX protease family protein [Burkholderia pseudomallei 1106a] gb|ABO02089.1| CAAX protease family protein [Burkholderia mallei NCTC 10247] gb|EBA45198.1| CAAX protease family protein [Burkholderia pseudomallei 305] gb|EDP85178.1| CAAX protease family protein [Burkholderia mallei ATCC 10399] gb|EDS82642.1| CAAX protease family protein [Burkholderia pseudomallei S13] gb|EDU11080.1| CAAX protease family protein [Burkholderia pseudomallei 1655] gb|EES21006.1| CAAX protease family protein [Burkholderia pseudomallei 1106b] gb|EET04610.1| CAAX protease family protein [Burkholderia pseudomallei 1710a] Length = 302 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 116/221 (52%), Gaps = 9/221 (4%) Query: 70 HAWQRRSLLALTLLLALLLALHRWPGFHNVLVIPSAAITADARPFMLFANLDKGSAGLLL 129 HA R + A+ + LAL L LH PGFHN VI T DA PF ++ NLDK G L Sbjct: 84 HAAVRVAGHAVFVALALALMLHWLPGFHNPRVIGPVRFTPDAAPFTMYLNLDKPLVGFWL 143 Query: 130 LALLA---PRCHAWREWRESIARTLLPGIATIVLVMGVGWLTGMVKPALKWPVFTVEFLA 186 L +L P R WR I +V +GV G+V A KWP +LA Sbjct: 144 LWVLPWLRPIDDRARAWRAGIVAAAATSAVCLVFALGV----GLVGWAPKWPESAWLWLA 199 Query: 187 INLLLTVVAEEAFFRGVIQQRLQQAWQG-LRGGAVLALILSAVLFGAAHLGGGLAYAALA 245 NLL AEEA FRG +Q L + + +AL+ +A+LFGAAH GG + ALA Sbjct: 200 NNLLFVCFAEEALFRGYLQGGLSRLLANRVPAAGTVALVAAALLFGAAHAAGGWQWVALA 259 Query: 246 TVAGAGYGWVFQRTGRIEAPILLHFTLNAVHFLAFTYPALA 286 TVAG GYG + R G ++A +L H LN HF FTYP LA Sbjct: 260 TVAGVGYGLAY-RAGGLQAAVLAHVGLNLAHFGLFTYPMLA 299 >ref|YP_105838.1| CAAX protease family protein [Burkholderia mallei ATCC 23344] ref|ZP_00437989.1| caax protease family protein [Burkholderia mallei GB8 horse 4] ref|YP_989767.1| CAAX protease family protein [Burkholderia mallei SAVP1] ref|ZP_02269313.1| CAAX protease family protein [Burkholderia mallei PRL-20] ref|ZP_04896639.1| CAAX protease family protein [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04907016.1| CAAX protease family protein [Burkholderia mallei FMH] ref|ZP_04973143.1| CAAX protease family protein [Burkholderia mallei 2002721280] gb|AAU46583.1| CAAX protease family protein [Burkholderia mallei ATCC 23344] gb|ABM48911.1| CAAX protease family protein [Burkholderia mallei SAVP1] gb|EDK55338.1| CAAX protease family protein [Burkholderia mallei FMH] gb|EDK84018.1| CAAX protease family protein [Burkholderia mallei 2002721280] gb|EDO93477.1| CAAX protease family protein [Burkholderia pseudomallei Pasteur 52237] gb|EEP83098.1| caax protease family protein [Burkholderia mallei GB8 horse 4] gb|EES43154.1| CAAX protease family protein [Burkholderia mallei PRL-20] Length = 290 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 116/221 (52%), Gaps = 9/221 (4%) Query: 70 HAWQRRSLLALTLLLALLLALHRWPGFHNVLVIPSAAITADARPFMLFANLDKGSAGLLL 129 HA R + A+ + LAL L LH PGFHN VI T DA PF ++ NLDK G L Sbjct: 72 HAAVRVAGHAVFVALALALMLHWLPGFHNPRVIGPVRFTPDAAPFTMYLNLDKPLVGFWL 131 Query: 130 LALLA---PRCHAWREWRESIARTLLPGIATIVLVMGVGWLTGMVKPALKWPVFTVEFLA 186 L +L P R WR I +V +GV G+V A KWP +LA Sbjct: 132 LWVLPWLRPIDDRARAWRAGIVAAAATSAVCLVFALGV----GLVGWAPKWPESAWLWLA 187 Query: 187 INLLLTVVAEEAFFRGVIQQRLQQAWQG-LRGGAVLALILSAVLFGAAHLGGGLAYAALA 245 NLL AEEA FRG +Q L + + +AL+ +A+LFGAAH GG + ALA Sbjct: 188 NNLLFVCFAEEALFRGYLQGGLSRLLANRVPAAGTVALVAAALLFGAAHAAGGWQWVALA 247 Query: 246 TVAGAGYGWVFQRTGRIEAPILLHFTLNAVHFLAFTYPALA 286 TVAG GYG + R G ++A +L H LN HF FTYP LA Sbjct: 248 TVAGVGYGLAY-RAGGLQAAVLAHVGLNLAHFGLFTYPMLA 287