BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5146.p (292 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777360.1| transcription regulator protein [Herbaspiril... 522 e-146 gb|EGW60790.1| transcriptional regulator, AraC family [Dechloros... 393 e-107 ref|YP_003052247.1| AraC family transcriptional regulator [Methy... 383 e-104 ref|YP_004040807.1| AraC family transcriptional regulator [Methy... 373 e-101 ref|YP_003047491.1| AraC family transcriptional regulator [Methy... 362 4e-98 >ref|YP_003777360.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65452.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 258/292 (88%), Positives = 270/292 (92%), Gaps = 4/292 (1%) Query: 1 MNDDRKTSSQARYQARFERVLDHIEAHLHTPLEMEQLAAVAHFSRFHFQRQFADFTGVGA 60 M+D+RK + YQARFERVLDHIEAHLH PLE+EQLA VAHFSRFHFQRQFADFTGVG Sbjct: 1 MSDERKKA----YQARFERVLDHIEAHLHAPLEVEQLANVAHFSRFHFQRQFADFTGVGV 56 Query: 61 ARYILLMRLKHASLQLAFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRTPDW 120 ARYILLMRLKHASLQLAFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRR PDW Sbjct: 57 ARYILLMRLKHASLQLAFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRAPDW 116 Query: 121 PSWNERFVFRIPERKVDVQVEIVNVESIRIAMLTHRGPVNQLNGTVGQFIDWRKATGLSP 180 PSW+ERFVFRIPERKVDVQVEI +VE IRIA+L HRGPVN LN TV QFI WRKA+GLSP Sbjct: 117 PSWHERFVFRIPERKVDVQVEITHVEPIRIALLAHRGPVNGLNATVAQFIAWRKASGLSP 176 Query: 181 VERCRTFGLAWDNPDTTPPEQFRFGICGEVEGELPDNPQGVEAFLIPGGRCARVRHAGAH 240 VERCRTFGLAWDNPDTTPPEQFRFGICGE+EG+LP N QGV LIPGGRCARVRH GAH Sbjct: 177 VERCRTFGLAWDNPDTTPPEQFRFGICGELEGDLPGNAQGVVESLIPGGRCARVRHVGAH 236 Query: 241 DRLGESIYPLYRQWLPESGEELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK 292 +RLG+SIYPLYRQWLPESGEELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK Sbjct: 237 ERLGDSIYPLYRQWLPESGEELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK 288 >gb|EGW60790.1| transcriptional regulator, AraC family [Dechlorosoma suillum PS] Length = 288 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 200/292 (68%), Positives = 232/292 (79%), Gaps = 4/292 (1%) Query: 1 MNDDRKTSSQARYQARFERVLDHIEAHLHTPLEMEQLAAVAHFSRFHFQRQFADFTGVGA 60 MNDDR + RY ARF++VL +IEAHL PL E+L+ VAHFSRFHF RQFADF G A Sbjct: 1 MNDDRIS----RYAARFDKVLAYIEAHLDEPLTAERLSRVAHFSRFHFDRQFADFLGTSA 56 Query: 61 ARYILLMRLKHASLQLAFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRTPDW 120 RY+LL+RL+ AS +LAFQP+ RIIDIALEAGFENPESF+RAFR FGQSPSQFRR PDW Sbjct: 57 TRYLLLLRLRRASFKLAFQPRIRIIDIALEAGFENPESFSRAFRHIFGQSPSQFRRQPDW 116 Query: 121 PSWNERFVFRIPERKVDVQVEIVNVESIRIAMLTHRGPVNQLNGTVGQFIDWRKATGLSP 180 W+ER+ FR+PER VQVEIV +ES IA L H GP ++N +V +FIDWRK+TGLSP Sbjct: 117 QGWSERYRFRLPERNATVQVEIVEIESTLIAALEHLGPAEKVNDSVARFIDWRKSTGLSP 176 Query: 181 VERCRTFGLAWDNPDTTPPEQFRFGICGEVEGELPDNPQGVEAFLIPGGRCARVRHAGAH 240 + RTFG+A+DNPDTT P +FRF I GEV+ ++P N QGV IP GRCARVRH G+H Sbjct: 177 KDSSRTFGIAYDNPDTTEPSRFRFDIAGEVQAQVPPNAQGVVTKEIPCGRCARVRHLGSH 236 Query: 241 DRLGESIYPLYRQWLPESGEELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK 292 R+GESIYPLYR WLP SGEELRDFPL+FHYLNLLPDTP EL+TDIYLPLK Sbjct: 237 MRIGESIYPLYRNWLPGSGEELRDFPLFFHYLNLLPDTPENELVTDIYLPLK 288 >ref|YP_003052247.1| AraC family transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT51720.1| transcriptional regulator, AraC family [Methylovorus glucosetrophus SIP3-4] Length = 288 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 181/280 (64%), Positives = 216/280 (77%) Query: 13 YQARFERVLDHIEAHLHTPLEMEQLAAVAHFSRFHFQRQFADFTGVGAARYILLMRLKHA 72 Y RF++VLDHIE HL L M+ L +A FSRFHF RQFAD+ G+ ARYILL+RL+HA Sbjct: 9 YAMRFQKVLDHIEQHLDQSLSMDALCDIAGFSRFHFHRQFADYIGITVARYILLLRLRHA 68 Query: 73 SLQLAFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRTPDWPSWNERFVFRIP 132 S QLAF P+ +IIDIAL AGFE PESFTRAF + FGQSPS FR+ PDW +W+ + FR+P Sbjct: 69 SYQLAFDPKVKIIDIALNAGFETPESFTRAFGNIFGQSPSAFRKNPDWEAWHVVYGFRLP 128 Query: 133 ERKVDVQVEIVNVESIRIAMLTHRGPVNQLNGTVGQFIDWRKATGLSPVERCRTFGLAWD 192 E +QVEIVNVE+ IA+ HRG ++LN +VG FI WRK TG SP RTFG+A+D Sbjct: 129 EGNKIMQVEIVNVETTMIAVKEHRGAPDKLNHSVGDFIAWRKQTGSSPKNSSRTFGIAYD 188 Query: 193 NPDTTPPEQFRFGICGEVEGELPDNPQGVEAFLIPGGRCARVRHAGAHDRLGESIYPLYR 252 NPDTT P FRF I GE++ ++ N QG+ IPGGRCARVRH G+H R+GESIYPLYR Sbjct: 189 NPDTTEPSAFRFDIAGEIKTDIAVNEQGIVVKSIPGGRCARVRHHGSHTRIGESIYPLYR 248 Query: 253 QWLPESGEELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK 292 +WLPESGEELRDFPLYFHY+NLLP+TP EL+TDIYLPLK Sbjct: 249 EWLPESGEELRDFPLYFHYVNLLPETPEAELITDIYLPLK 288 >ref|YP_004040807.1| AraC family transcriptional regulator [Methylovorus sp. MP688] gb|ADQ85571.1| transcriptional regulator, AraC family [Methylovorus sp. MP688] Length = 273 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 176/273 (64%), Positives = 210/273 (76%) Query: 20 VLDHIEAHLHTPLEMEQLAAVAHFSRFHFQRQFADFTGVGAARYILLMRLKHASLQLAFQ 79 +LDHIE HL L M+ L +A FSRFHF RQFAD+ G+ ARYILL+RL+ AS QLAF Sbjct: 1 MLDHIEQHLDQSLSMDALCDIAGFSRFHFHRQFADYIGITVARYILLLRLRQASYQLAFD 60 Query: 80 PQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRTPDWPSWNERFVFRIPERKVDVQ 139 P+ ++IDIAL AGFE PESFTRAF + FGQSPS FR+ PDW +W+ + FR+PE +Q Sbjct: 61 PKVKVIDIALNAGFETPESFTRAFGNIFGQSPSAFRKNPDWEAWHVVYGFRLPEGNKIMQ 120 Query: 140 VEIVNVESIRIAMLTHRGPVNQLNGTVGQFIDWRKATGLSPVERCRTFGLAWDNPDTTPP 199 VEIVNVE+ IA+ HRG ++LN +VG FI WRK TG SP RTFG+A+DNPDTT P Sbjct: 121 VEIVNVEATMIAVKEHRGAPDKLNHSVGDFIAWRKQTGSSPKNSSRTFGIAYDNPDTTEP 180 Query: 200 EQFRFGICGEVEGELPDNPQGVEAFLIPGGRCARVRHAGAHDRLGESIYPLYRQWLPESG 259 FRF I GE++ ++ N QG+ IPGGRCARVRH G+H R+GESIYPLYR+WLPESG Sbjct: 181 SAFRFDIAGEIKTDIAVNEQGIVVKSIPGGRCARVRHHGSHTRIGESIYPLYREWLPESG 240 Query: 260 EELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK 292 EELRDFPLYFHY+NLLPDTP EL+TDIYLPLK Sbjct: 241 EELRDFPLYFHYVNLLPDTPEAELITDIYLPLK 273 >ref|YP_003047491.1| AraC family transcriptional regulator [Methylotenera mobilis JLW8] gb|ACT46964.1| transcriptional regulator, AraC family [Methylotenera mobilis JLW8] Length = 286 Score = 362 bits (929), Expect = 4e-98, Method: Composition-based stats. Identities = 170/285 (59%), Positives = 213/285 (74%) Query: 8 SSQARYQARFERVLDHIEAHLHTPLEMEQLAAVAHFSRFHFQRQFADFTGVGAARYILLM 67 S + Y+ RF RV D+I+ HL L +E ++ VA FS++HF RQF+++TG+ RYI LM Sbjct: 2 SKASAYETRFNRVFDYIDKHLGEVLTLESVSQVASFSKYHFHRQFSEYTGISVFRYIQLM 61 Query: 68 RLKHASLQLAFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRTPDWPSWNERF 127 RLK AS +LAF I DIAL+AGFENPESF+RAF++AFGQ+PS FRR+P W WNER+ Sbjct: 62 RLKRASYRLAFNKIEMITDIALDAGFENPESFSRAFKNAFGQTPSGFRRSPAWEPWNERY 121 Query: 128 VFRIPERKVDVQVEIVNVESIRIAMLTHRGPVNQLNGTVGQFIDWRKATGLSPVERCRTF 187 ERK ++V I+ E ++A+L HRG +N +VG FI+WRK++GLSPV+ +F Sbjct: 122 QLPNRERKQSMEVNIIEFEETKVAVLEHRGTPALINDSVGIFIEWRKSSGLSPVKSSESF 181 Query: 188 GLAWDNPDTTPPEQFRFGICGEVEGELPDNPQGVEAFLIPGGRCARVRHAGAHDRLGESI 247 G+A+DNPDTT PEQFRF ICG V ++PDNPQGV +IP GRCA +RH G+HDR+G Sbjct: 182 GIAYDNPDTTDPEQFRFDICGSVSEDVPDNPQGVVNKIIPRGRCAVIRHHGSHDRIGTCA 241 Query: 248 YPLYRQWLPESGEELRDFPLYFHYLNLLPDTPPGELLTDIYLPLK 292 Y LYR WLPESGEELRDFPLYFHYLNLLPDT EL+TDIYLPLK Sbjct: 242 YYLYRDWLPESGEELRDFPLYFHYLNLLPDTSEHELITDIYLPLK 286