BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5144.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777359.1| response regulator transcription regulator p...   256   1e-66
ref|YP_003776129.1| sensory transduction regulatory protein [Her...    84   6e-15
ref|YP_003776604.1| sensory transduction regulatory protein [Her...    79   4e-13
ref|YP_160680.1| response regulator [Aromatoleum aromaticum EbN1...    59   2e-07
ref|YP_385732.1| response regulator receiver domain-containing p...    59   2e-07

>ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65451.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 188

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 135/171 (78%), Positives = 151/171 (88%)

Query: 1   MSFPSIIMIDPSQEAAELARFALWRAGLHCAFRACPDLATARRCLLQGRRQGDDIAPSLI 60
           MSFPSIIMIDPS EAAELARFALWRAGLHCAFRAC D+ATARRCLL GRR GD   PSLI
Sbjct: 13  MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72

Query: 61  LLESDMECGEGLQLLRELRASKHLADAPVVVFPSYETEGEREALAAGATEYLPKPVDGEH 120
           LLESDMECG+GL+LLRELRAS HLA+APVVVFPS++TEGEREAL AGAT YLPKP+DGE 
Sbjct: 73  LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 132

Query: 121 YAQCVVEMVERWCDVSEAAAPLSADVMRDALAGLPGHPQRRQEDGSPQGGR 171
           YA+CVVEMVERWCDVSEAAAP+   + R++L GLPGHP+RR++D    GG+
Sbjct: 133 YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLVAPGGK 183


>ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64221.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 140

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/135 (46%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 1   MSFPSIIMIDPSQEAAELARFALWRAGLHCAFRACPDLATARRCLL--QGRRQGDDIAPS 58
           MS PSI+M+DPS E+ ELARF LWR  L CAF    D   A + L   Q R    D+ P 
Sbjct: 1   MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADL-PC 59

Query: 59  LILLESDMECGEGLQLLRELRASKHLADAPVVVFP-SYETEGEREALAAGATEYLPKPVD 117
           LILLE  +   EGL+LL  LRA  H    PVV+F  S +      A AAGA +YL KPVD
Sbjct: 60  LILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVD 119

Query: 118 GEHYAQCVVEMVERW 132
              + + V + V RW
Sbjct: 120 ARAFMELVSQTVRRW 134


>ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64696.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 154

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 1   MSFPSIIMIDPSQEAAELARFALWRAGLHCAFRACPDLATARRCLLQGRRQGDDIAPSLI 60
           M  P I+MI+ + EA ELARFALWR+  HC  +   +   A   LL   R  D   P LI
Sbjct: 1   MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60

Query: 61  LLESDMECGEGLQLLRELRASKHLADAPVVVFPSYETEGER-EALAAGATEYLPKPVDGE 119
           LL+  M    G+  +  ++A +     PVVVFP  +   E  + L AGA+ YL KP    
Sbjct: 61  LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120

Query: 120 HYAQCVVEMVE 130
            Y Q VVE  +
Sbjct: 121 QYMQAVVECAQ 131


>ref|YP_160680.1| response regulator [Aromatoleum aromaticum EbN1]
 emb|CAI09779.1| Response regulator [Aromatoleum aromaticum EbN1]
          Length = 152

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 48  GRRQGDDIA--PSLILLESDMECGEGLQLLRELRASKHLADAPVVVF-PSYETEGEREAL 104
           G  QG D++  P ++LL+  +   +GL++LR +RA +H    PVV+   S E +   EA 
Sbjct: 50  GSYQGRDLSLMPVVVLLDLKLPRMDGLEVLRRMRADEHTGLLPVVILTTSRERQDIHEAY 109

Query: 105 AAGATEYLPKPVDGEHYAQCVVEMVERWCDVSEAAAP 141
             GA  Y+ KPVD E +   V ++V  W  ++E A P
Sbjct: 110 RLGANSYIRKPVDFERFIHAVGQIVTYWLALNETADP 146


>ref|YP_385732.1| response regulator receiver domain-containing protein [Geobacter
           metallireducens GS-15]
 gb|ABB33007.1| response regulator receiver domain protein (CheY-like) [Geobacter
           metallireducens GS-15]
          Length = 122

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 46  LQGRRQGDDIAPSLILLESDMECGEGLQLLRELRASKHLADAPVVVFPSYETEGERE-AL 104
            +G    D + P+LILL+  +   +G  + R+LRA+  LAD P+V   SY   G+RE AL
Sbjct: 36  FEGIALADSVRPTLILLDIQLPEMDGYDVARKLRANPSLADVPIVAVTSYAMAGDREKAL 95

Query: 105 AAGATEYLPKPVDGEHYAQCVVE 127
            AG + Y+ KP++ + + Q V E
Sbjct: 96  IAGCSGYIEKPINPDTFMQQVKE 118