BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5136.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751121.1| ribosome hibernation protein YhbH [Collimona...   154   6e-36
ref|YP_003777353.1| sigma-54 modulation protein [Herbaspirillum ...   147   5e-34
ref|YP_001101340.1| putative sigma(54) modulation protein RpoX [...   146   1e-33
ref|YP_001355043.1| sigma-54 modulation protein [Janthinobacteri...   146   1e-33
ref|ZP_08274232.1| Ribosome hibernation protein YhbH [Oxalobacte...   144   4e-33

>ref|YP_004751121.1| ribosome hibernation protein YhbH [Collimonas fungivorans Ter331]
 gb|AEK60298.1| Ribosome hibernation protein YhbH [Collimonas fungivorans Ter331]
          Length = 117

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 94/116 (81%), Positives = 103/116 (88%), Gaps = 1/116 (0%)

Query: 1   MNLTISGHHLELTPAIREYVQSKLSRIKRHFDNVIDVSVILSVDKLTEKEKRQKAEINVH 60
           MN TISGHHLELTPAIREYVQSKL RIKRHFD VID+SVIL+VDK+TEKEKRQKAEIN+ 
Sbjct: 1   MNFTISGHHLELTPAIREYVQSKLERIKRHFDQVIDISVILTVDKITEKEKRQKAEINLR 60

Query: 61  IKGKDLHAESIAHDLYAAIDTLIDKLDRQVIKHKDKLQEH-HSMAKRLPDETPEDA 115
           +KGKDLHAESIAHDLYAAID LIDKLDRQVIK+KDK+Q+H H   K LP+E P  A
Sbjct: 61  VKGKDLHAESIAHDLYAAIDALIDKLDRQVIKYKDKMQDHQHDAIKHLPEELPAAA 116


>ref|YP_003777353.1| sigma-54 modulation protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65445.1| sigma-54 modulation protein [Herbaspirillum seropedicae SmR1]
          Length = 108

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/88 (97%), Positives = 87/88 (98%)

Query: 1  MNLTISGHHLELTPAIREYVQSKLSRIKRHFDNVIDVSVILSVDKLTEKEKRQKAEINVH 60
          MNLTISGHHLELTPAIREYVQSKL+RIKRHFDNVIDVSVILSVDKLTEKEKRQKAEINVH
Sbjct: 1  MNLTISGHHLELTPAIREYVQSKLARIKRHFDNVIDVSVILSVDKLTEKEKRQKAEINVH 60

Query: 61 IKGKDLHAESIAHDLYAAIDTLIDKLDR 88
          IKGKDLHAESIAHDLYAAID LIDKLDR
Sbjct: 61 IKGKDLHAESIAHDLYAAIDALIDKLDR 88


>ref|YP_001101340.1| putative sigma(54) modulation protein RpoX [Herminiimonas
           arsenicoxydans]
 emb|CAL63219.1| Sigma(54) modulation protein [Herminiimonas arsenicoxydans]
          Length = 117

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/118 (75%), Positives = 104/118 (88%), Gaps = 3/118 (2%)

Query: 1   MNLTISGHHLELTPAIREYVQSKLSRIKRHFDNVIDVSVILSVDKLTEKEKRQKAEINVH 60
           MNLTISGHHLELTPAIREYVQ KL RIKRHFD+VID++VIL+VD L EKEKRQ+AEIN+ 
Sbjct: 1   MNLTISGHHLELTPAIREYVQGKLERIKRHFDHVIDIAVILTVDNLPEKEKRQRAEINLR 60

Query: 61  IKGKDLHAESIAHDLYAAIDTLIDKLDRQVIKHKDKLQEH-HSMAKRLPDETPEDAVA 117
           ++GKD+H ESIA++LYAAIDTL+DKLDRQVIK+K K Q+H H   KRLPDE+  DAVA
Sbjct: 61  VRGKDIHVESIANNLYAAIDTLVDKLDRQVIKYKTKQQDHQHDAIKRLPDES--DAVA 116


>ref|YP_001355043.1| sigma-54 modulation protein [Janthinobacterium sp. Marseille]
 gb|ABR91623.1| sigma-54 modulation protein [Janthinobacterium sp. Marseille]
          Length = 117

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 1   MNLTISGHHLELTPAIREYVQSKLSRIKRHFDNVIDVSVILSVDKLTEKEKRQKAEINVH 60
           MNLTISGHHLELTPAIREYVQ KL RIKRHFD+VID++VIL+VD L EKEKRQ+AEIN+ 
Sbjct: 1   MNLTISGHHLELTPAIREYVQGKLERIKRHFDHVIDIAVILTVDNLPEKEKRQRAEINLR 60

Query: 61  IKGKDLHAESIAHDLYAAIDTLIDKLDRQVIKHKDKLQEH-HSMAKRLPDET 111
           ++GKDLHAESIA +LYAAIDTLIDKLDRQVIK+K K Q+H H   KRLPD +
Sbjct: 61  VRGKDLHAESIADNLYAAIDTLIDKLDRQVIKYKTKQQDHQHDAIKRLPDAS 112


>ref|ZP_08274232.1| Ribosome hibernation protein YhbH [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32300.1| Ribosome hibernation protein YhbH [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 118

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/110 (79%), Positives = 100/110 (90%), Gaps = 1/110 (0%)

Query: 1   MNLTISGHHLELTPAIREYVQSKLSRIKRHFDNVIDVSVILSVDKLTEKEKRQKAEINVH 60
           MNLTISGHHLE+TPAIREYVQSKL RIKRHFD+VID++VIL+V+KL EKEKRQ+AEIN+H
Sbjct: 1   MNLTISGHHLEVTPAIREYVQSKLERIKRHFDHVIDIAVILTVEKLPEKEKRQRAEINLH 60

Query: 61  IKGKDLHAESIAHDLYAAIDTLIDKLDRQVIKHKDKLQEH-HSMAKRLPD 109
           ++GKDLHAESIA DLYAAID LIDKLDRQVIK+K KLQ+H H   K +PD
Sbjct: 61  LRGKDLHAESIAEDLYAAIDALIDKLDRQVIKYKTKLQDHQHDAIKHIPD 110