BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5133.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777350.1| signal peptide protein [Herbaspirillum serop... 291 3e-77 ref|YP_004751124.1| ABC transporter periplasmic-binding protein ... 226 8e-58 ref|YP_001101337.1| ABC transporter periplasmic substrate-bindin... 221 4e-56 ref|ZP_08274229.1| Protein yhbN precursor [Oxalobacteraceae bact... 215 2e-54 ref|ZP_04577265.1| ABC transporter periplasmic substrate-binding... 211 5e-53 >ref|YP_003777350.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ65442.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 291 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 160/176 (90%), Positives = 169/176 (96%) Query: 1 MKRSFLLPMLMLAAVCGVANAEKADSTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLI 60 MKRS LLP+LMLAA+ GVA AEKAD+TKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLI Sbjct: 1 MKRSLLLPLLMLAALSGVARAEKADTTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLI 60 Query: 61 IKAGRVVLTTDQYGYENAVLYAAPGALANFRQKRDGGPNLWIEGQAERIEYSEQTEISKL 120 IKAGRVVLTTDQYGYENAVLYAAPG+LA FRQKRDGGP+LWIEGQAERIEYSEQTE+SKL Sbjct: 61 IKAGRVVLTTDQYGYENAVLYAAPGSLATFRQKRDGGPDLWIEGQAERIEYSEQTEVSKL 120 Query: 121 FQRAHIQRMDGDRITDEVNGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPR 176 FQRAHIQRMDG RITDEVNGEFISYDSRAEFYSVNNT +G+SKPG GRITA+IQPR Sbjct: 121 FQRAHIQRMDGKRITDEVNGEFISYDSRAEFYSVNNTASGQSKPGAGRITAVIQPR 176 >ref|YP_004751124.1| ABC transporter periplasmic-binding protein [Collimonas fungivorans Ter331] gb|AEK60301.1| putative transport protein (ABC superfamily, peri_bind) [Collimonas fungivorans Ter331] Length = 211 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 109/159 (68%), Positives = 132/159 (83%) Query: 18 VANAEKADSTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLIIKAGRVVLTTDQYGYEN 77 +A+AEKADS KPT I++DQ+ YDDV+QV TGNVV+TRGTL++KA RVV+TTD GY+ Sbjct: 48 LAHAEKADSEKPTLIDSDQLTYDDVKQVNVATGNVVLTRGTLLMKADRVVVTTDPSGYQF 107 Query: 78 AVLYAAPGALANFRQKRDGGPNLWIEGQAERIEYSEQTEISKLFQRAHIQRMDGDRITDE 137 A LYA PG LA F+QKRDGGP+LWI+G AERIEY +TEI+KLF +A ++R+ GD+ TDE Sbjct: 108 ATLYADPGKLATFKQKRDGGPDLWIDGHAERIEYDGKTEITKLFSKAQMRRLQGDKPTDE 167 Query: 138 VNGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPR 176 VNGEFISYDSR EFYSVNNT G S+PG GRI A+IQPR Sbjct: 168 VNGEFISYDSRTEFYSVNNTVNGNSQPGAGRIRAVIQPR 206 >ref|YP_001101337.1| ABC transporter periplasmic substrate-binding protein [Herminiimonas arsenicoxydans] emb|CAL63216.1| Conserved hypothetical protein, putative organic solvent tolerance protein [Herminiimonas arsenicoxydans] Length = 185 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 103/163 (63%), Positives = 138/163 (84%) Query: 19 ANAEKADSTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLIIKAGRVVLTTDQYGYENA 78 A+AEKAD++KPTN+EADQM YDDV+Q+ TF GNVV+TRG++++KA ++V+T D GY+ Sbjct: 20 AHAEKADASKPTNVEADQMQYDDVKQINTFIGNVVLTRGSILMKANKMVVTQDPAGYQFV 79 Query: 79 VLYAAPGALANFRQKRDGGPNLWIEGQAERIEYSEQTEISKLFQRAHIQRMDGDRITDEV 138 V+YAAPG LA+FRQKRDGGP+ WI+GQAERIEY ++ EI KLF +A ++R++ + TDEV Sbjct: 80 VMYAAPGTLASFRQKRDGGPDQWIDGQAERIEYDDKNEIMKLFSKARMRRLENGKTTDEV 139 Query: 139 NGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPRVDSSK 181 NGE+ISYD+RAEF++V+NT +G+SKPG GRI AIIQPR +K Sbjct: 140 NGEYISYDTRAEFFTVHNTASGDSKPGAGRIKAIIQPRATDTK 182 >ref|ZP_08274229.1| Protein yhbN precursor [Oxalobacteraceae bacterium IMCC9480] gb|EGF32297.1| Protein yhbN precursor [Oxalobacteraceae bacterium IMCC9480] Length = 184 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 112/178 (62%), Positives = 137/178 (76%), Gaps = 2/178 (1%) Query: 1 MKRSFLLPMLML-AAVCGVANAEKADSTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTL 59 MK F +LM AA +AEKADS KPT ++A+QM YDDV+QV TFTG+VV+ RGTL Sbjct: 1 MKPFFFAFLLMFNAAFVPAVHAEKADSNKPTVVDANQMAYDDVKQVNTFTGDVVVVRGTL 60 Query: 60 IIKAGRVVLTTDQYGYENAVLYAAPGALANFRQKRDGGPNLWIEGQAERIEYSEQTEISK 119 ++KA RVV+ D GY+ A LYAAPG+LA+FRQKRDGG NLWIEG+AERIEY +TE+ K Sbjct: 61 LMKAARVVVVQDPAGYQFATLYAAPGSLASFRQKRDGGENLWIEGEAERIEYDGKTELVK 120 Query: 120 LFQRAHIQRMDGDRITDEVNGEFISYDSRAEFYSVNNTNTGE-SKPGGGRITAIIQPR 176 LF +A ++R++G TDEV GEFISYDSR EF+SVNNT G+ S+ GGGRI A IQPR Sbjct: 121 LFSKAKMRRLNGTTPTDEVEGEFISYDSRTEFFSVNNTPAGQDSEAGGGRIKATIQPR 178 >ref|ZP_04577265.1| ABC transporter periplasmic substrate-binding protein [Oxalobacter formigenes HOxBLS] gb|EEO28227.1| ABC transporter periplasmic substrate-binding protein [Oxalobacter formigenes HOxBLS] Length = 184 Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 102/176 (57%), Positives = 132/176 (75%), Gaps = 1/176 (0%) Query: 2 KRSF-LLPMLMLAAVCGVANAEKADSTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLI 60 K SF LL +L + A AE+AD+ KPTNIEADQM DDV+Q+ TFTGNVV+T+GTL+ Sbjct: 3 KTSFKLLALLFCIGLASNAAAERADANKPTNIEADQMTSDDVKQITTFTGNVVVTKGTLL 62 Query: 61 IKAGRVVLTTDQYGYENAVLYAAPGALANFRQKRDGGPNLWIEGQAERIEYSEQTEISKL 120 IKAG+ V+ D GY+ LYAAPG LA+ RQK+D GP++WIEG E+IEY + E++K Sbjct: 63 IKAGKAVIVEDPEGYQFITLYAAPGKLASLRQKQDAGPDIWIEGYGEKIEYDNKKEVAKF 122 Query: 121 FQRAHIQRMDGDRITDEVNGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPR 176 F RA ++R+ G +ITD++ GEFISYD + E+YSV NTN G SKPG GR+ A+IQPR Sbjct: 123 FTRARVKRLQGTKITDDITGEFISYDGKTEYYSVYNTNEGVSKPGAGRVKAVIQPR 178