BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5130.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777347.1| sugar phosphate isomerase [Herbaspirillum se... 548 e-154 ref|YP_004751127.1| Arabinose 5-phosphate isomerase [Collimonas ... 466 e-129 ref|YP_001101334.1| D-arabinose 5-phosphate isomerase [Herminiim... 438 e-121 ref|YP_001355037.1| polysialic acid capsule expression protein [... 424 e-116 ref|ZP_08274226.1| Arabinose 5-phosphate isomerase [Oxalobactera... 420 e-115 >ref|YP_003777347.1| sugar phosphate isomerase [Herbaspirillum seropedicae SmR1] emb|CAM32654.1| Sugar phosphate isomerase (involved in capsule formation) protein [Herbaspirillum seropedicae] gb|ADJ65439.1| sugar phosphate isomerase (involved in capsule formation) protein [Herbaspirillum seropedicae SmR1] Length = 342 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 305/342 (89%), Positives = 325/342 (95%) Query: 1 MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKDRLRDDSADPLALAVQTLLQ 60 MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALK+RL DD+++PLA AV LLQ Sbjct: 1 MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKNRLGDDASEPLAQAVHLLLQ 60 Query: 61 CEGRAVVSGIGKSGHVGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTARDVFIAISNSG 120 C GRAVVSGIGKSGH+GRKIAATLASTGTPSLFMHPAEAAHGDLGMVT DVFIAISNSG Sbjct: 61 CNGRAVVSGIGKSGHIGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTPNDVFIAISNSG 120 Query: 121 ETAELLAIVPIVKRMGAVIIAMTGNDQSTLAKLSAVHLNVGVAQEACTLNLAPTASTTAT 180 ET EL+AI+PIVKRMGAVIIAMTGND S+LA+++ VHLNVGV +EACTLNLAPTASTTAT Sbjct: 121 ETGELMAIMPIVKRMGAVIIAMTGNDNSSLARMANVHLNVGVDKEACTLNLAPTASTTAT 180 Query: 181 LAMGDALAVSLLDARGFVEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDVSLSA 240 LAMGDALAVSLLDARGF+EEDFARSHPGGALGRRLLTHVRDVMRSG+AIPAV PDVSLS Sbjct: 181 LAMGDALAVSLLDARGFLEEDFARSHPGGALGRRLLTHVRDVMRSGDAIPAVSPDVSLSQ 240 Query: 241 ALMEITRKGMAMTAVVDEQFRPVGVFTDGDLRRLLERGQDFSKFYIADVMHANPQTVNQD 300 ALMEITRKGMAMTAVVD FRP+GVFTDGDLRRLLERGQDFS+F IA++MHANP+TVNQD Sbjct: 241 ALMEITRKGMAMTAVVDADFRPIGVFTDGDLRRLLERGQDFSQFRIAEIMHANPRTVNQD 300 Query: 301 QLAVDAVQLMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342 QLAVDAVQLME+FRINQLLVTDA GVLTGALHIHDLTRAKVI Sbjct: 301 QLAVDAVQLMEEFRINQLLVTDAQGVLTGALHIHDLTRAKVI 342 >ref|YP_004751127.1| Arabinose 5-phosphate isomerase [Collimonas fungivorans Ter331] gb|AEK60304.1| Arabinose 5-phosphate isomerase [Collimonas fungivorans Ter331] Length = 343 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 267/346 (77%), Positives = 294/346 (84%), Gaps = 7/346 (2%) Query: 1 MSVTDDK----TTPASFSAGAARRAIELARQTLQIEADAILALKDRLRDDSADPLALAVQ 56 MS+TD K P SF AG RA++LAR TLQIEADAI+ALK+R+ D DP A A+ Sbjct: 1 MSLTDTKILPRNLPQSFDAG---RALKLARSTLQIEADAIIALKNRISDALDDPFAQAIA 57 Query: 57 TLLQCEGRAVVSGIGKSGHVGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTARDVFIAI 116 LL C GR VVSGIGKSGH+ RKIAATLASTGTP+LF+HPAEAAHGDLGMVT D FIAI Sbjct: 58 LLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPALFIHPAEAAHGDLGMVTEDDAFIAI 117 Query: 117 SNSGETAELLAIVPIVKRMGAVIIAMTGNDQSTLAKLSAVHLNVGVAQEACTLNLAPTAS 176 SNSGETAEL+AIVPI+KRMGA +IAMTGN S LA+L+ VHL+V V QEAC LNLAPTAS Sbjct: 118 SNSGETAELMAIVPIIKRMGASLIAMTGNQDSALAQLANVHLDVKVDQEACPLNLAPTAS 177 Query: 177 TTATLAMGDALAVSLLDARGFVEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDV 236 TTATLAMGDALAV+LLDARGF EEDFARSHPGGALGRRLLTHVRDVMR GEAIPAV DV Sbjct: 178 TTATLAMGDALAVALLDARGFREEDFARSHPGGALGRRLLTHVRDVMRGGEAIPAVTADV 237 Query: 237 SLSAALMEITRKGMAMTAVVDEQFRPVGVFTDGDLRRLLERGQDFSKFYIADVMHANPQT 296 SLS AL+EITRKG+AMTAVVDE+F +GVFTDGDLRRL+E+ QDF+K IADVMHANP + Sbjct: 238 SLSTALLEITRKGIAMTAVVDEKFHAIGVFTDGDLRRLIEQVQDFTKLKIADVMHANPHS 297 Query: 297 VNQDQLAVDAVQLMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342 + DQLAVDAV +MEQFRINQLLVTDAAG L GALHIHDLTRAKVI Sbjct: 298 IGPDQLAVDAVHMMEQFRINQLLVTDAAGTLVGALHIHDLTRAKVI 343 >ref|YP_001101334.1| D-arabinose 5-phosphate isomerase [Herminiimonas arsenicoxydans] emb|CAL63213.1| Arabinose 5-phosphate isomerase [Herminiimonas arsenicoxydans] Length = 342 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 247/342 (72%), Positives = 284/342 (83%) Query: 1 MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKDRLRDDSADPLALAVQTLLQ 60 MSV K PA+F A +A RA++ AR TLQIEADAILALK R+ ++S + AV LL Sbjct: 1 MSVPHAKKPPATFDAKSATRALQFARDTLQIEADAILALKQRISNESGEQFIQAVALLLN 60 Query: 61 CEGRAVVSGIGKSGHVGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTARDVFIAISNSG 120 C GR VVSGIGKSGH+ RKIA+TLASTGTP+LF+H AEA+HGDLGM+TA D IAIS SG Sbjct: 61 CTGRVVVSGIGKSGHIARKIASTLASTGTPALFVHAAEASHGDLGMITADDALIAISYSG 120 Query: 121 ETAELLAIVPIVKRMGAVIIAMTGNDQSTLAKLSAVHLNVGVAQEACTLNLAPTASTTAT 180 E EL+AIVPI+KRMGA +I +TGND STLA+L+ VHLNV V +EAC LNLAPTASTTAT Sbjct: 121 EAGELVAIVPIIKRMGATLITITGNDDSTLAQLADVHLNVRVDKEACPLNLAPTASTTAT 180 Query: 181 LAMGDALAVSLLDARGFVEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDVSLSA 240 LA+GDALAV+LLDARGF EEDFARSHPGGALGRRLLTHVRDVMR+G+AIP V D SL Sbjct: 181 LAIGDALAVALLDARGFGEEDFARSHPGGALGRRLLTHVRDVMRTGDAIPTVGKDASLYT 240 Query: 241 ALMEITRKGMAMTAVVDEQFRPVGVFTDGDLRRLLERGQDFSKFYIADVMHANPQTVNQD 300 AL+EI+RKGMAMTAVVD R +GVFTDGDLRRL+E +DFS IA+VMHANP++V D Sbjct: 241 ALLEISRKGMAMTAVVDAGGRAIGVFTDGDLRRLIENQRDFSTLSIAEVMHANPRSVQPD 300 Query: 301 QLAVDAVQLMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342 QLAVDAV++ME+FRINQLLVT+A G L GALHIHDLTRAKVI Sbjct: 301 QLAVDAVKMMEEFRINQLLVTNADGKLVGALHIHDLTRAKVI 342 >ref|YP_001355037.1| polysialic acid capsule expression protein [Janthinobacterium sp. Marseille] gb|ABR89483.1| polysialic acid capsule expression protein [Janthinobacterium sp. Marseille] Length = 342 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 237/342 (69%), Positives = 277/342 (80%) Query: 1 MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKDRLRDDSADPLALAVQTLLQ 60 MSV+ PA+F A + RA++ A TLQIEADAILALK+R+ ++ AV LL Sbjct: 1 MSVSHAPNPPATFDAQSTARALQFACDTLQIEADAILALKERITSKTSQQFIQAVTLLLN 60 Query: 61 CEGRAVVSGIGKSGHVGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTARDVFIAISNSG 120 C+GR VVSGIGKSGH+ RKIA+TLASTGTP+ F+H AEA+HGDLGM+TA DV I IS SG Sbjct: 61 CKGRVVVSGIGKSGHIARKIASTLASTGTPAFFVHAAEASHGDLGMITADDVLIGISYSG 120 Query: 121 ETAELLAIVPIVKRMGAVIIAMTGNDQSTLAKLSAVHLNVGVAQEACTLNLAPTASTTAT 180 E ELL IVP +KRMGA +I +TGND S LA + VHLNV + +EAC LNLAPTASTTAT Sbjct: 121 EAGELLGIVPTIKRMGARLITITGNDASNLAVQADVHLNVHIDKEACPLNLAPTASTTAT 180 Query: 181 LAMGDALAVSLLDARGFVEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDVSLSA 240 LA+GDALAV+LLDARGF EEDFARSHPGGALGRRLLTHVRDVMR+GEAIP V D +L A Sbjct: 181 LALGDALAVALLDARGFGEEDFARSHPGGALGRRLLTHVRDVMRTGEAIPTVAKDATLYA 240 Query: 241 ALMEITRKGMAMTAVVDEQFRPVGVFTDGDLRRLLERGQDFSKFYIADVMHANPQTVNQD 300 AL+E ++KGMAMTAVVD + R +GVFTDGDLRRL+E QDFSK IA+VMHA+P++V+ D Sbjct: 241 ALLESSKKGMAMTAVVDAEGRAIGVFTDGDLRRLIETQQDFSKLSIAEVMHASPRSVHPD 300 Query: 301 QLAVDAVQLMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342 QLAVDAV +ME +RINQLLVTD +G L GALHIHDLTRAKVI Sbjct: 301 QLAVDAVDMMETYRINQLLVTDNSGKLVGALHIHDLTRAKVI 342 >ref|ZP_08274226.1| Arabinose 5-phosphate isomerase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32294.1| Arabinose 5-phosphate isomerase [Oxalobacteraceae bacterium IMCC9480] Length = 349 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 251/335 (74%), Positives = 284/335 (84%), Gaps = 3/335 (0%) Query: 11 ASFSAGAARRAIELARQTLQIEADAILALKDRLRD---DSADPLALAVQTLLQCEGRAVV 67 A F+A A RA+ LAR+TLQIEADA+L LK RL D D+A A AV LL C GR VV Sbjct: 15 APFTAERAARALVLARETLQIEADALLTLKARLSDPAIDNAGCFAKAVGLLLDCTGRVVV 74 Query: 68 SGIGKSGHVGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTARDVFIAISNSGETAELLA 127 SGIGKSGH+ RKIAATLASTGTPSLF+HPAEAAHGDLGM+ +DVF+AISNSGETAEL+A Sbjct: 75 SGIGKSGHIARKIAATLASTGTPSLFVHPAEAAHGDLGMIGPQDVFVAISNSGETAELMA 134 Query: 128 IVPIVKRMGAVIIAMTGNDQSTLAKLSAVHLNVGVAQEACTLNLAPTASTTATLAMGDAL 187 IVP +KRMGAV++ MTGND S+LA+L+ VHLNV V +EAC LNLAPT STTA LA+GDAL Sbjct: 135 IVPSIKRMGAVLVTMTGNDASSLARLATVHLNVAVDKEACPLNLAPTTSTTAALALGDAL 194 Query: 188 AVSLLDARGFVEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDVSLSAALMEITR 247 AV+LLDARGF EDFARSHPGGALGRRLLTHVRDVMRSG IPAV VSLS AL E+TR Sbjct: 195 AVALLDARGFRAEDFARSHPGGALGRRLLTHVRDVMRSGGEIPAVLATVSLSQALAEMTR 254 Query: 248 KGMAMTAVVDEQFRPVGVFTDGDLRRLLERGQDFSKFYIADVMHANPQTVNQDQLAVDAV 307 KGMAMTAVVDE FRP+GVFTDGDLRRL+E QDF++ +ADVMH++P+T+ DQLAVDAV Sbjct: 255 KGMAMTAVVDESFRPIGVFTDGDLRRLIEHVQDFTRLTVADVMHSDPRTIGPDQLAVDAV 314 Query: 308 QLMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342 Q+ME+ RINQLLV DAAG+L GALHIHDLTRAKVI Sbjct: 315 QVMEELRINQLLVADAAGMLVGALHIHDLTRAKVI 349