BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5128.p (591 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777345.1| methyl-accepting chemotaxis I MCP-I serine c... 561 e-158 ref|YP_315380.1| methyl-accepting chemotaxis sensory transducer ... 432 e-119 ref|YP_004695869.1| methyl-accepting chemotaxis sensory transduc... 402 e-110 ref|YP_001098440.1| methyl-accepting chemotaxis protein [Hermini... 399 e-109 ref|YP_004695867.1| methyl-accepting chemotaxis sensory transduc... 395 e-107 >ref|YP_003777345.1| methyl-accepting chemotaxis I MCP-I serine chemoreceptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65437.1| methyl-accepting chemotaxis I MCP-I serine chemoreceptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 369/555 (66%), Positives = 449/555 (80%), Gaps = 6/555 (1%) Query: 43 SKLTIRARLIFVIGFLALMLVGSGVLGLVGLRSTNAQMRSLYEDRLVAFSQLERMSAALD 102 +K +I+ RLI I FL +ML+ SG++GLV L STN +MRSLYEDRLVA++ LE++ + L+ Sbjct: 2 NKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTLE 61 Query: 103 AARNGISTSIVGDSGD------IDANMDRIEKAIKANDAIVKQYQDTQLTSDERVLLDKL 156 +AR+GI I DS + ID +D + +K + +++ YQ T LT +E LL++L Sbjct: 62 SARSGIYGIITLDSSEGWDPNEIDRRLDLLVNNLKTVEPVIRSYQATYLTPEESTLLERL 121 Query: 157 IPQRQKFVTDGIKPAAEALRNRDFQGAIELYGGVMLKLYADAHTTLAQLMDLQRTVGREL 216 + QRQ + +G+ PA E+LR R FQGA ++Y G M K + H TL+ L +LQ VGREL Sbjct: 122 LKQRQHYADEGVMPAVESLRKRSFQGADDIYSGAMRKQWDAVHQTLSDLKELQINVGREL 181 Query: 217 HEQAQQRYQTLLVVMGVAMAAGLFVALLMGVLLVRAISRPLQRAVTVAQAVAAGDLTQQI 276 +E QQRY+ L+++ +AM AGL VA+L LLVRAIS+PL +AV +AQAVA GDL++QI Sbjct: 182 YEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQAVAGGDLSRQI 241 Query: 277 DVHSQDETGQLMQALRQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGA 336 +V SQDETGQLMQAL+ M L IV VR T+TI AS EI GNLDLS+RTEQQAG+ Sbjct: 242 EVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSARTEQQAGS 301 Query: 337 LEETASAMEQLTSTVRHNADSAQQAKELAHSASEVAVRGGEVVRQVVDTMSSINQSSSKI 396 LEETASAM QLTSTV+ NAD+A QA +LA SASEVAVRGGEVVRQVVDTM+SINQSS++I Sbjct: 302 LEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTRI 361 Query: 397 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLI 456 VDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR+A+AA+EIK LI Sbjct: 362 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKDLI 421 Query: 457 DDSVTRVGTGSALVAQAGQTIDEVVRSVQRVSEVVTDISAAGQEQSQGIEEVNNAIVLMD 516 DDSV +VG GSALV QAG+T++EVV +V++V+++V +IS+A QEQSQGI+E++ AIVLMD Sbjct: 422 DDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEIDRAIVLMD 481 Query: 517 SSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPVAAQSSSGKSS 576 SSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPVAAQSSSGKSS Sbjct: 482 SSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPVAAQSSSGKSS 541 Query: 577 DAAERVPGRGGLLLP 591 +AAERVP GGLL P Sbjct: 542 EAAERVPASGGLLAP 556 >ref|YP_315380.1| methyl-accepting chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] gb|AAZ97575.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] Length = 572 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 293/537 (54%), Positives = 386/537 (71%), Gaps = 10/537 (1%) Query: 41 MFSKLTIRARLIFVIGFLALMLVGSGVLGLVGLRSTNAQMRSLYEDRLVAFSQLERMSAA 100 M + L+I++RL+FVIGFL+++L G LGLV L +TN ++++YEDR+V LER++A Sbjct: 3 MLANLSIKSRLVFVIGFLSILLTAIGGLGLVSLSATNGSLKTVYEDRVVGLGHLERINAL 62 Query: 101 LDAARNGISTSIVG-------DSGDIDANMDRIEKAIKANDAIVKQYQDTQLTSDERVLL 153 ++ ++ + ++ G DS +D ++ I+ I D I K + + L+S+E+ L Sbjct: 63 MNGSQIIVGEAVAGQLSAFPDDSAVVDQRVNDIKNTITEIDGIWKTFLASHLSSEEKALA 122 Query: 154 DKLIPQRQKFVTDGIKPAAEALRNRDFQGAIELYGGVMLKLYADAHTTLAQLMDLQRTVG 213 D RQK+ +G+ P AL DFQ A E+ G M + Y L+ Q + Sbjct: 123 DAFSASRQKYGREGVVPVLAALSAHDFQQAGEILQGPMRETYPAVRANAEALIASQLKLA 182 Query: 214 RELHEQAQQRYQTLLVVMGVAMAAGLFVALLMGVLLVRAISRPLQRAVTVAQAVAAGDLT 273 + AQ R+ + + A+ AG+ +A L GV LVRAI+RPL +AV +A++VAAGDLT Sbjct: 183 QSEFAAAQSRFVMVRNISVFAIVAGVLLAGLTGVWLVRAITRPLNQAVRIAESVAAGDLT 242 Query: 274 QQIDVHSQDETGQLMQALRQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQ 333 Q+I+V SQDETGQLMQAL+ MN +L IVGQVR TDTIA AS EIA GN DLSSRTE Q Sbjct: 243 QKIEVQSQDETGQLMQALKDMNVSLADIVGQVRHGTDTIAVASREIASGNADLSSRTESQ 302 Query: 334 AGALEETASAMEQLTSTVRHNADSAQQAKELAHSASEVAVRGGEVVRQVVDTMSSINQSS 393 A +LEETAS+ME+LTSTVR NA++A+QA +L S ++VAV+GGEVV QVVDTM+SI SS Sbjct: 303 ASSLEETASSMEELTSTVRQNAENARQANQLVVSTADVAVKGGEVVGQVVDTMASIKDSS 362 Query: 394 SKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 453 KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK Sbjct: 363 RKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIK 422 Query: 454 VLIDDSVTRVGTGSALVAQAGQTIDEVVRSVQRVSEVVTDISAAGQEQSQGIEEVNNAIV 513 LI+DSV +V GS LV +AG+T+DE+V SV+RV++++++I+AA QEQS GIE+VN A+ Sbjct: 423 SLIEDSVGKVDAGSKLVDEAGKTMDEIVSSVKRVTDIMSEIAAASQEQSAGIEQVNQAVG 482 Query: 514 LMDSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAER---LGAPPVA 567 MD TQQNAALVE+AAAAA++L++QA KL+ A+S FRL GA++ R + AP VA Sbjct: 483 QMDEMTQQNAALVEEAAAAAESLQEQAAKLADAVSVFRLDGAYAQRREVPVSAPRVA 539 >ref|YP_004695869.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] gb|AEJ02470.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] Length = 574 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 280/518 (54%), Positives = 366/518 (70%), Gaps = 3/518 (0%) Query: 41 MFSKLTIRARLIFVIGFLALMLVGSGVLGLVGLRSTNAQMRSLYEDRLVAFSQLERMSAA 100 MF+ +TI++RLI VIG L+++L+G G LG+ GL TN R +YEDR V L + Sbjct: 1 MFNNMTIKSRLILVIGMLSVLLIGVGGLGIYGLNQTNDSFRGVYEDRAVPLGDLGLILDR 60 Query: 101 LDAARNGISTSIVGDSGDIDANMDRIEKAIKANDAIV-KQYQDTQLTSDERVLLDKLIPQ 159 + AR S G + +I + A A ++Y T LT +E L++ Q Sbjct: 61 MQRARLNAVMSAYGRNAEIVKERQAMTNQRDAEIAAAWQKYTATNLTPEEATLVENFNQQ 120 Query: 160 RQKFVTDGIKPAAEALRNRDFQGAIELYGGVMLKLYADAHTTLAQLMDLQRTVGRELHEQ 219 + +V + A D+ AI K A AH TL +L++LQR G + + Sbjct: 121 WKAYVEPRNQTMVLAAAG-DYDAAITNALSATPKFDA-AHATLFKLLELQRDEGAKEYAA 178 Query: 220 AQQRYQTLLVVMGVAMAAGLFVALLMGVLLVRAISRPLQRAVTVAQAVAAGDLTQQIDVH 279 AQ Y+ + + +A G+F A ++G LL+RAI+ PL A+ VA AVAAGDLT +I+V+ Sbjct: 179 AQNDYKNIFMTSVTVIALGIFFAAIIGFLLIRAITTPLNEAIAVANAVAAGDLTSRIEVN 238 Query: 280 SQDETGQLMQALRQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEE 339 S +ETG+L+QAL+QMNDNL +VG+VR+ TD+I TAS EIA GNLDLS RTE+QA +LEE Sbjct: 239 STNETGRLLQALKQMNDNLVDLVGKVRMGTDSITTASGEIASGNLDLSQRTEEQASSLEE 298 Query: 340 TASAMEQLTSTVRHNADSAQQAKELAHSASEVAVRGGEVVRQVVDTMSSINQSSSKIVDI 399 TAS+ME+LTSTVR NAD+A+QA +LA ASEVAV+GG VV QVV TMSSIN+SS KIVDI Sbjct: 299 TASSMEELTSTVRQNADNARQANQLAAGASEVAVKGGAVVGQVVQTMSSINESSKKIVDI 358 Query: 400 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDS 459 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI DS Sbjct: 359 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELISDS 418 Query: 460 VTRVGTGSALVAQAGQTIDEVVRSVQRVSEVVTDISAAGQEQSQGIEEVNNAIVLMDSST 519 V++V G+ LV +AG T+DE+V +V+RV++++ +ISAA QEQS GIE+VN A+ MD T Sbjct: 419 VSKVEDGTRLVDEAGATMDEIVSAVKRVTDIMAEISAASQEQSSGIEQVNQAVTQMDEVT 478 Query: 520 QQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHS 557 QQNAALVE+AAAAA+++++QA+ L+ A+S F+L G S Sbjct: 479 QQNAALVEEAAAAAESMQEQAQTLTQAVSTFKLSGGGS 516 >ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] emb|CAL60311.1| Methyl-accepting chemotaxis protein II [Herminiimonas arsenicoxydans] Length = 572 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 275/518 (53%), Positives = 359/518 (69%) Query: 41 MFSKLTIRARLIFVIGFLALMLVGSGVLGLVGLRSTNAQMRSLYEDRLVAFSQLERMSAA 100 M +TI++ L+FV+G L+L+L+ +G+LGL L +TN +RS+YEDR V QL + Sbjct: 1 MLKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVITL 60 Query: 101 LDAARNGISTSIVGDSGDIDANMDRIEKAIKANDAIVKQYQDTQLTSDERVLLDKLIPQR 160 + ++ SI GD G + MD IEK K + + + LT + +VL DK R Sbjct: 61 STINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFAADR 120 Query: 161 QKFVTDGIKPAAEALRNRDFQGAIELYGGVMLKLYADAHTTLAQLMDLQRTVGRELHEQA 220 + F+ ++PA A R + E+ G M +L +A L+DL+ ++ E++ Sbjct: 121 KIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELREAKKAFEES 180 Query: 221 QQRYQTLLVVMGVAMAAGLFVALLMGVLLVRAISRPLQRAVTVAQAVAAGDLTQQIDVHS 280 Q R+ + + A+ G+ +A M L+R I+RPL AV +A++VAAGDLTQQI V+S Sbjct: 181 QTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNS 240 Query: 281 QDETGQLMQALRQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEET 340 +ETGQL+QAL+ MND+L V VR T+TI AS EIA GN DLSSRTE QAG+LEET Sbjct: 241 TNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEET 300 Query: 341 ASAMEQLTSTVRHNADSAQQAKELAHSASEVAVRGGEVVRQVVDTMSSINQSSSKIVDII 400 AS+ME+LTSTVR NAD+A+QA +L SA+EVAV+GG VV +VV TM SI SS KIVDII Sbjct: 301 ASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDII 360 Query: 401 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDSV 460 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LIDDSV Sbjct: 361 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSV 420 Query: 461 TRVGTGSALVAQAGQTIDEVVRSVQRVSEVVTDISAAGQEQSQGIEEVNNAIVLMDSSTQ 520 +V GS LV QAG T+ E+V SV+ V++++++I++A QEQS GIE+VN AI MD TQ Sbjct: 421 HKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQ 480 Query: 521 QNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSA 558 QNAALVEQAAAAAQ+++DQA +LS A++ F+L SA Sbjct: 481 QNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAGGSA 518 >ref|YP_004695867.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] ref|YP_004695874.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] gb|AEJ02468.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] gb|AEJ02475.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] Length = 575 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 278/518 (53%), Positives = 367/518 (70%), Gaps = 2/518 (0%) Query: 41 MFSKLTIRARLIFVIGFLALMLVGSGVLGLVGLRSTNAQMRSLYEDRLVAFSQLERMSAA 100 MF+ +TI++RL+FVI L+L+LVG G LGL G+ +NA ++S+YEDR V QL ++ Sbjct: 1 MFNNMTIKSRLMFVISMLSLLLVGIGSLGLYGINQSNAGLKSVYEDRTVPAVQLGKILDV 60 Query: 101 LDAARNGISTSIVGDSGDI-DANMDRIEKAIKANDAIVKQYQDTQLTSDERVLLDKLIPQ 159 R + + + D+ A + K +K N+A+ Q+ T+LT++E L Q Sbjct: 61 WHLVRRNATEAAQAKNVDVAKARGEEALKLVKQNEAVWAQFMATKLTTEEAALAKTKGEQ 120 Query: 160 RQKFVTDGIKPAAEALRNRDFQGAIELYGGVMLKLYADAHTTLAQLMDLQRTVGRELHEQ 219 ++V + A A+ M K A T A L+DLQ T + + Sbjct: 121 HVQYVESLNRTLQLASAGEFEAAALNASTDAMQKFNALRDTVFA-LLDLQGTAAAQEYAT 179 Query: 220 AQQRYQTLLVVMGVAMAAGLFVALLMGVLLVRAISRPLQRAVTVAQAVAAGDLTQQIDVH 279 AQ Y+ + + V M G+ +A+++G LL+RAI PL A+ VA AVAAGDLT +I+ + Sbjct: 180 AQNHYENIFMTSVVVMILGVSLAIIVGFLLIRAIVGPLNEAIAVANAVAAGDLTSRIEAN 239 Query: 280 SQDETGQLMQALRQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEE 339 S +ETG+L+QALR MNDNL +VG+VR+ TD+I TAS EIA GNLDLS RTE+QA +LEE Sbjct: 240 STNETGRLLQALRTMNDNLADLVGKVRMGTDSITTASGEIASGNLDLSQRTEEQASSLEE 299 Query: 340 TASAMEQLTSTVRHNADSAQQAKELAHSASEVAVRGGEVVRQVVDTMSSINQSSSKIVDI 399 TAS+ME+LTSTVR NAD+A+QA +LA ASEVAV+GG VV QVV TMSSIN+SS KIVDI Sbjct: 300 TASSMEELTSTVRQNADNARQANQLAAGASEVAVKGGAVVGQVVQTMSSINESSKKIVDI 359 Query: 400 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDS 459 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI DS Sbjct: 360 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELISDS 419 Query: 460 VTRVGTGSALVAQAGQTIDEVVRSVQRVSEVVTDISAAGQEQSQGIEEVNNAIVLMDSST 519 V++V G+ LV +AG T+DE+V +V+RV++++ +ISAA QEQS GIE+VN A+ MD T Sbjct: 420 VSKVEDGTRLVDEAGATMDEIVSAVKRVTDIMAEISAASQEQSSGIEQVNQAVTQMDEVT 479 Query: 520 QQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHS 557 QQNAALVE+AAAAA+++++QA+ L+ A+S F+L G S Sbjct: 480 QQNAALVEEAAAAAESMQEQAQTLTQAVSTFKLSGGGS 517