BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5124.p (611 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose transferase tran... 816 0.0 ref|YP_002231494.1| hypothetical protein BCAL2370 [Burkholderia ... 466 e-129 ref|YP_003604535.1| hypothetical protein BC1002_0929 [Burkholder... 465 e-128 ref|ZP_02454891.1| hypothetical protein Bpseu9_07055 [Burkholder... 461 e-127 ref|ZP_04887811.1| putative membrane protein [Burkholderia pseud... 460 e-127 >ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose transferase transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65434.1| 4-amino-4-deoxy-L-arabinose transferase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 584 Score = 816 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 453/583 (77%), Positives = 497/583 (85%) Query: 28 MFLFDSLNEGKTSTSRSAQPVSAAGGQALPARLAWLLLILAGAAWLLPGVFGHGPWKQDE 87 MFL S K S SA P S G +A AR WLLL+LAG AWLLPG+FGHGPWKQDE Sbjct: 1 MFLIKSPAINKVGPSVSATPASTYGERATFARFGWLLLVLAGLAWLLPGIFGHGPWKQDE 60 Query: 88 TYTFGMIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAALLAKLAYPLLPYHEGARLASVL 147 TYTFG+IHHMLVSGEYLVPTNAGQPFMEKPPLYYWTA LLAKL YPLLPYHEGARLASVL Sbjct: 61 TYTFGVIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAMLLAKLLYPLLPYHEGARLASVL 120 Query: 148 YNLVTLVFVARIAKMMWGQRSLMSLPVLATLALFAGTPGMVKHAHDMFTDVALVTGGVMA 207 YNLVTLVFVARIA++MW +R ++SLPVL T+ALFAG+PGM+KHAHDMFTDVALVTGG MA Sbjct: 121 YNLVTLVFVARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDVALVTGGAMA 180 Query: 208 TYGLLAIALNEERRTPAWSAAFWFGLGVGITEMTKGLFVPLTFAATAMAIGVMVPACRSR 267 YGLLAIALNEERR P+WSAAFWFGLGVGIT+MTKGLFVPLTFAATAMA+GV+V CRS Sbjct: 181 IYGLLAIALNEERRAPSWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSL 240 Query: 268 SYWKMVGTAVLVSLPFFVIWPALLAQHSMPLFMEWFWDNNVGRFFGFSVKKLGSDNDHTV 327 SYWKMVG AVLVSLPFFV+WPALLAQHS+PLFMEWFWDNNVGRFFGFSV KLGSDNDHTV Sbjct: 241 SYWKMVGAAVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDHTV 300 Query: 328 ILRALGGFALPGSVLALVALGSGDWRQVGTSKVALPLAFGAISLAVLQSSATARQLYLLP 387 ILRAL GFALPGSVLA++AL +GDWRQ G+ +VALPLAF AISLAVLQSSATARQLYLLP Sbjct: 301 ILRALIGFALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYLLP 360 Query: 388 VLLPLVMLGARALPRLPALANLAWDWFSRLAFGALAVGIWATYIVSTWPADQHQPIAFMG 447 VLLPL +LGARA+ RLP +L WDWFSR+AFG LA IWA Y+VS+ PA H I FMG Sbjct: 361 VLLPLALLGARAIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAADHHWIDFMG 420 Query: 448 KWLPLSFVTPIQPLAVLAAGAMSILWIASLGLLSRAGQWRGAFSWFGGITLMWGLAFTLL 507 +WLPL+FVTP+QPLA+ AA MS+LW+ LG L AGQWRGA SWF GITLMWGLAFTLL Sbjct: 421 QWLPLNFVTPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWFAGITLMWGLAFTLL 480 Query: 508 LPWADYGKSYEYVYADLQTKIGPAWQEGDCMASQALGESEAPMLYYYTGILHQPIDGGRH 567 LPWADYGKSYE+VY DL+ +I WQ+GDCMAS+ LGESEAPMLYYYTGILHQPIDG Sbjct: 481 LPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQ 540 Query: 568 TACRWLIQEMPDAGKRPHGHWTLFWEGRRDGDEGQLFKIYERA 610 T CRW++ E P P G W LFWEGRRDGD+GQL K+Y RA Sbjct: 541 TQCRWVLLETPGNTPLPQGQWKLFWEGRRDGDDGQLLKVYRRA 583 >ref|YP_002231494.1| hypothetical protein BCAL2370 [Burkholderia cenocepacia J2315] emb|CAR52671.1| putative membrane protein [Burkholderia cenocepacia J2315] Length = 630 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 275/563 (48%), Positives = 345/563 (61%), Gaps = 14/563 (2%) Query: 61 AWLLLILAGAAWLLPGVFGHGPWKQDETYTFGMIHHMLVSGEYLVPTNAGQPFMEKPPLY 120 AW+ + A+ LPGV GH PWKQDETYTFG+I HML +G+++VPTNAG PFMEKPPLY Sbjct: 61 AWVFVAALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLY 120 Query: 121 YWTAALLAKLAYPLLPYHEGARLASVLYNLVTLVFVARIAKMMWGQRSLMSLPVLATLAL 180 W A LA L ++P H+ ARLAS L+ + F+AR A+M + L VL + L Sbjct: 121 AWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAARMASRTENWFDLRVLGPVVL 180 Query: 181 FAGTPGMVKHAHDMFTDVALVTGGVMATYGLLAIALNEERRT-------PAWSAAFW--- 230 AGT ++KH HDM TDVAL G M GLL + + R P A+ W Sbjct: 181 SAGTLVVIKHVHDMMTDVALFAGTAMGFCGLLELVMQHVARAQQMRHGLPVHPASRWAAP 240 Query: 231 -FGLGVGITEMTKGLFVPLTFAATAMAIGVMVPACRSRSYWKMVGTAVLVSLPFFVIWPA 289 FG GVGI M KGLFVPL FAAT + V+ PACR+RS+ + +G A LV PF +IWP Sbjct: 241 LFGAGVGIALMAKGLFVPLVFAATLVCTLVLYPACRTRSFARALGIAALVFAPFALIWPT 300 Query: 290 LLAQHSMPLFMEWFWDNNVGRFFGFSVKKLGSDNDHTV-ILRALGGFALPGSVLALVALG 348 L S LFM+WFWDNNVGRFFGFSV +LG++ND + ILRA P + LA+VAL Sbjct: 301 ALFLRSETLFMKWFWDNNVGRFFGFSVPELGAENDKPLFILRAFLTVGFPIAPLAIVALA 360 Query: 349 SGDWRQVGTSKVALPLAFGAISLAVLQSSATARQLYLLPVLLPLVMLGARALPRLPALAN 408 G WR VALP+ F I L VLQ SAT+RQLY+LP PL ++ A+A+ RLP + Sbjct: 361 RGAWRDWRVPSVALPVLFAGIGLVVLQISATSRQLYILPFFAPLALVAAQAIERLPRRLH 420 Query: 409 LAWDWFSRLAFGALAVGIWATYIVSTWPADQHQPIAFMGKWLPLSFVTPIQPLAVLAAGA 468 LAWD+ SRL FG + V WA + V PA +A +G+WLPL + PIQP V A A Sbjct: 421 LAWDYLSRLLFGTVVVLAWAIWAVMADPAASRADLALLGRWLPLDWTMPIQPALVTGALA 480 Query: 469 MSILWIASLGLLSRAGQWRGAFSWFGGITLMWGLAFTLLLPWADYGKSYEYVYADLQTKI 528 +++ W+ L L G+WRGA SW G + WGL +TLLLPW D KSY V+ DL + Sbjct: 481 LTVGWLTLLPKLRTTGRWRGALSWGAGALVAWGLVYTLLLPWLDAAKSYRSVFDDLNAHL 540 Query: 529 GPAWQEGDCMAS-QALGESEAPMLYYYTGILHQPIDGGRHTACRWLI-QEMPDAGKRPHG 586 W +GDCMAS GESEAPM+YY++GI H PID + T C W+I Q + P Sbjct: 541 ALEWNDGDCMASLPGFGESEAPMMYYFSGIQHTPIDDAKTTRCTWMIVQGVRAVEPAPGS 600 Query: 587 HWTLFWEGRRDGDEGQLFKIYER 609 W LFW G R GD +L ++Y R Sbjct: 601 EWKLFWTGARPGDNDELLRVYVR 623 >ref|YP_003604535.1| hypothetical protein BC1002_0929 [Burkholderia sp. CCGE1002] gb|ADG15024.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 655 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 272/579 (46%), Positives = 346/579 (59%), Gaps = 29/579 (5%) Query: 60 LAWLLLILAGAAWLLPGVFGHGPWKQDETYTFGMIHHMLVSGEYLVPTNAGQPFMEKPPL 119 L W + + AWL+PG+ GH PWKQDETYTFG++ HML +G+ +VPTNAGQPF+EKPP+ Sbjct: 66 LLWFVALAILCAWLVPGILGHEPWKQDETYTFGIVQHMLDTGDLVVPTNAGQPFVEKPPI 125 Query: 120 YYWTAALLAKLAYPLLPYHEGARLASVLYNLVTLVFVARIAKMMWGQRSLMSLPVLATLA 179 Y W A LA + LP H+ ARLAS L+ +T+ + AR+A+ S L V+ TLA Sbjct: 126 YDWVATGLAWMFGRYLPLHDAARLASALFAGLTVYYTARVARRAVAASSWFDLRVIGTLA 185 Query: 180 LFAGTPGMVKHAHDMFTDVALVTGGVMATYGLLAIAL----------------------- 216 LF GT +VKH HDM TDVAL+ G + GL + L Sbjct: 186 LFGGTLVVVKHVHDMMTDVALMAGAALGFCGLFELVLVHLRDDQSAASYFPMHARATQQI 245 Query: 217 ----NEERRTPAWSAAFWFGLGVGITEMTKGLFVPLTFAATAMAIGVMVPACRSRSYWKM 272 RR S A FG GVG++ + KGLFVPL F AT A ++ PACRSR + Sbjct: 246 EPLDARARRHAILSGATMFGAGVGVSLLAKGLFVPLVFGATTCAALLLYPACRSRGFAGA 305 Query: 273 VGTAVLVSLPFFVIWPALLAQHSMPLFMEWFWDNNVGRFFGFSVKKLGSDND-HTVILRA 331 + A LV PF +IWP S LF W WDNNVGRFFGFSV +LGS+N+ H +LR Sbjct: 306 LSLAALVCAPFALIWPICFYLRSEALFKVWLWDNNVGRFFGFSVAELGSENESHLFVLRT 365 Query: 332 LGGFALPGSVLALVALGSGDWRQVGTSKVALPLAFGAISLAVLQSSATARQLYLLPVLLP 391 + P LAL AL G WR+ +VALPL F I AVLQSSAT R+LY+LP + P Sbjct: 366 VLSVGFPVVPLALAALAGGAWRRWRDPRVALPLLFAGIGFAVLQSSATVRELYILPFIAP 425 Query: 392 LVMLGARALPRLPALANLAWDWFSRLAFGALAVGIWATYIVSTWPADQHQPIAFMGKWLP 451 L ++ + + RLPA + WD SR+ FG+ A +W + T PA H + +G+WLP Sbjct: 426 LALVAMQGIERLPARLHTGWDMTSRVLFGSAAALVWIVWSTMTTPASTHTSLHLLGRWLP 485 Query: 452 LSFVTPIQPLAVLAAGAMSILWIASLGLLSRAGQWRGAFSWFGGITLMWGLAFTLLLPWA 511 L +V PI P ++ A A++I W+ L AG+WRGA SW G L+WGL TLLLPW Sbjct: 486 LDWVLPISPALIIGALALTIGWLWLLPSFKYAGKWRGALSWCAGAMLVWGLVSTLLLPWL 545 Query: 512 DYGKSYEYVYADLQTKIGPAWQEGDCMASQALGESEAPMLYYYTGILHQPIDGGRHTACR 571 DY KSY V+ DL K+ W +GDCMAS LGESEAPML+YYTGI+HQP + R TAC Sbjct: 546 DYAKSYRSVFRDLGAKMDIEWNDGDCMASSGLGESEAPMLFYYTGIVHQPSEDPRTTACT 605 Query: 572 WLIQE-MPDAGKRPHGHWTLFWEGRRDGDEGQLFKIYER 609 WLI+E D + P G W LFW G R GD +L +++ R Sbjct: 606 WLIEESRRDNARPPAGEWRLFWSGARPGDSDELLRVFVR 644 >ref|ZP_02454891.1| hypothetical protein Bpseu9_07055 [Burkholderia pseudomallei 9] Length = 591 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 276/572 (48%), Positives = 357/572 (62%), Gaps = 11/572 (1%) Query: 49 SAAGGQALPARLAWLLLILAGAAWLLPGVFGHGPWKQDETYTFGMIHHMLVSGEYLVPTN 108 +AA AL AW + A+LLPG+ GH PWKQDETYTFG+I HML SG+++VPTN Sbjct: 10 AAATRTALTGWRAWFVAAAVLCAYLLPGILGHDPWKQDETYTFGIIQHMLESGDFVVPTN 69 Query: 109 AGQPFMEKPPLYYWTAALLAKLAYPLLPYHEGARLASVLYNLVTLVFVARIAKMMWGQRS 168 AGQPF+EKPPLY W A A L LP H+ ARLAS L+ + F AR A++ G Sbjct: 70 AGQPFLEKPPLYDWVATGFAWLFSRFLPLHDAARLASALFAALAFGFTARAARVATGAAR 129 Query: 169 LMSLPVLATLALFAGTPGMVKHAHDMFTDVALVTGGVMATYGLLAIALNE---------E 219 + LPV+ T+AL AG+ ++KH+HD+ TDVAL+ G M GLL + + E Sbjct: 130 WLELPVIGTVALCAGSLVVIKHSHDLMTDVALMAGAAMGFCGLLELVIRHAGDAFGARAE 189 Query: 220 RRTPAWSAAFWFGLGVGITEMTKGLFVPLTFAATAMAIGVMVPACRSRSYWKMVGTAVLV 279 R AA FGLGVGI M+KGLFVPL F AT A V+ PACRSR++++ + A LV Sbjct: 190 RPPANRFAAPLFGLGVGIALMSKGLFVPLVFGATLAATLVLYPACRSRAFFRSLAIAALV 249 Query: 280 SLPFFVIWPALLAQHSMPLFMEWFWDNNVGRFFGFSVKKLGSDNDHTV-ILRALGGFALP 338 PF +IWP L S LF+ WFW+NNVGRFFGFSV LG++ND + I RAL P Sbjct: 250 CAPFALIWPTALFLRSESLFLVWFWENNVGRFFGFSVPTLGAENDKPLFIWRALLTVGFP 309 Query: 339 GSVLALVALGSGDWRQVGTSKVALPLAFGAISLAVLQSSATARQLYLLPVLLPLVMLGAR 398 + LALVAL G WR +VALPL F I + VL SAT+RQLY+LP + PL ++ A+ Sbjct: 310 VAPLALVALARGLWRDWRAPRVALPLTFAGIGMVVLHISATSRQLYILPFIAPLALVAAQ 369 Query: 399 ALPRLPALANLAWDWFSRLAFGALAVGIWATYIVSTWPADQHQPIAFMGKWLPLSFVTPI 458 A+PRLP + AWD+ SRL FGA A +W + + + + ++G+WLPL + PI Sbjct: 370 AIPRLPQRLHAAWDYASRLLFGAAAALVWIVWSLMSDHGGPRAGLQWLGRWLPLDWTMPI 429 Query: 459 QPLAVLAAGAMSILWIASLGLLSRAGQWRGAFSWFGGITLMWGLAFTLLLPWADYGKSYE 518 +P VL+A A++I W+ L L AG+WRGA SW G + WGL +TLLLPW D KSY Sbjct: 430 EPALVLSALAITIGWVGLLPSLRLAGKWRGALSWAMGALVAWGLVYTLLLPWLDVAKSYR 489 Query: 519 YVYADLQTKIGPAWQEGDCMASQALGESEAPMLYYYTGILHQPIDGGRHTACRWLIQEMP 578 V+ DL ++ W +GDCMAS LGESEAPMLYY++G+LHQP+ +AC WLI + Sbjct: 490 SVFEDLNRRLALEWNDGDCMASVDLGESEAPMLYYFSGVLHQPVAQPNASACTWLIVQGT 549 Query: 579 DAGKRP-HGHWTLFWEGRRDGDEGQLFKIYER 609 A W FW G R GDE ++ ++Y R Sbjct: 550 RANPPVLDAEWKPFWAGARPGDEQEMLRVYVR 581 >ref|ZP_04887811.1| putative membrane protein [Burkholderia pseudomallei 1655] gb|EDU08795.1| putative membrane protein [Burkholderia pseudomallei 1655] Length = 605 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 278/572 (48%), Positives = 359/572 (62%), Gaps = 11/572 (1%) Query: 49 SAAGGQALPARLAWLLLILAGAAWLLPGVFGHGPWKQDETYTFGMIHHMLVSGEYLVPTN 108 +AA AL AW + A+LLPG+ GH PWKQDETYTFG+I HML SG+++VPTN Sbjct: 24 AAATRTALTGWRAWFVAAAVLCAYLLPGILGHDPWKQDETYTFGIIQHMLESGDFVVPTN 83 Query: 109 AGQPFMEKPPLYYWTAALLAKLAYPLLPYHEGARLASVLYNLVTLVFVARIAKMMWGQRS 168 AGQPF+EKPPLY W A A L LP H+ ARLAS L+ + F AR A++ G Sbjct: 84 AGQPFLEKPPLYDWVATGFAWLFSRFLPLHDAARLASALFAALAFGFTARAARVATGAAR 143 Query: 169 LMSLPVLATLALFAGTPGMVKHAHDMFTDVALVTGGVMATYGLLAIALNEE--------R 220 + LPV+ T+AL AG+ ++KH+HD+ TDVAL+ G M GLL + + Sbjct: 144 WLELPVIGTVALCAGSLVVIKHSHDLMTDVALMAGAAMGFCGLLELVIRHAGDAFGARAE 203 Query: 221 RTPAWS-AAFWFGLGVGITEMTKGLFVPLTFAATAMAIGVMVPACRSRSYWKMVGTAVLV 279 RTPA AA FGLGVGI M+KGLFVPL F AT A V+ PACRSR++++ + A LV Sbjct: 204 RTPANRFAAPLFGLGVGIALMSKGLFVPLVFGATLAATLVLYPACRSRAFFRSLAIAALV 263 Query: 280 SLPFFVIWPALLAQHSMPLFMEWFWDNNVGRFFGFSVKKLGSDNDHTV-ILRALGGFALP 338 PF +IWP L S LF+ WFW+NNVGRFFGFSV LG++ND + I RAL P Sbjct: 264 CAPFALIWPTALFLRSESLFLVWFWENNVGRFFGFSVPTLGAENDKPLFIWRALLTVGFP 323 Query: 339 GSVLALVALGSGDWRQVGTSKVALPLAFGAISLAVLQSSATARQLYLLPVLLPLVMLGAR 398 + LALVAL G WR +VALPL F I + VL SAT+RQLY+LP + PL ++ A+ Sbjct: 324 VAPLALVALARGLWRDWRAPRVALPLTFAGIGMVVLHISATSRQLYILPFIAPLALVAAQ 383 Query: 399 ALPRLPALANLAWDWFSRLAFGALAVGIWATYIVSTWPADQHQPIAFMGKWLPLSFVTPI 458 A+PRLP + AWD+ SRL FGA A +W + + + + ++G+WLPL + PI Sbjct: 384 AIPRLPQRLHAAWDYASRLLFGAAAALVWIVWSLMSDHGGPRAGLQWLGRWLPLDWTMPI 443 Query: 459 QPLAVLAAGAMSILWIASLGLLSRAGQWRGAFSWFGGITLMWGLAFTLLLPWADYGKSYE 518 +P VL+A A++I W+ L L AG+WRGA SW G + WGL +TLLLPW D KSY Sbjct: 444 EPALVLSALAITIGWVGLLPSLRLAGKWRGALSWAMGALVAWGLVYTLLLPWLDVAKSYR 503 Query: 519 YVYADLQTKIGPAWQEGDCMASQALGESEAPMLYYYTGILHQPIDGGRHTACRWLIQEMP 578 V+ DL ++ W +GDCMAS LGESEAPMLYY++G+LHQP+ +AC WLI + Sbjct: 504 SVFEDLNRRLALEWNDGDCMASVDLGESEAPMLYYFSGVLHQPVAQPNASACTWLIVQGT 563 Query: 579 DAGKRP-HGHWTLFWEGRRDGDEGQLFKIYER 609 A W FW G R GDE ++ ++Y R Sbjct: 564 RANPPVLDTEWKPFWAGARPGDEQEMLRVYVR 595