BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5121.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777339.1| branched-chain amino acid ABC transporter pe... 375 e-102 ref|YP_001478782.1| extracellular ligand-binding receptor [Serra... 161 2e-37 ref|YP_004500988.1| extracellular ligand-binding receptor [Serra... 159 7e-37 ref|ZP_06190288.1| extracellular ligand-binding receptor [Serrat... 159 9e-37 ref|ZP_05967743.1| putative amino acid ABC transporter, periplas... 158 2e-36 >ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65431.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 205/379 (54%), Positives = 269/379 (70%), Gaps = 3/379 (0%) Query: 13 MRRITTTMALFIAIWLPCTMTPARSEQLRYVTLGLSAWLTQPIVQSAWHGAELAVEDANT 72 MRR L + L M +++ + + LG + L++PI QSA GA+LA+++AN Sbjct: 1 MRRSGARRVLAGVLLLWAFMQAGWAQERKTIALGFTGRLSEPIAQSALQGAQLAIDEANA 60 Query: 73 LAARKKSSCRFRLLAQDDQGTANFGVNVAHYFIKEKVAGVIGPWSSDAAMATAELYEAAR 132 LAA+++S RF LL QDD G NF VN+A Y++KEKVAGVIGPWSSDAA+ATA +YE+A+ Sbjct: 61 LAAKRRSPLRFELLPQDDHGNENFAVNIARYYVKEKVAGVIGPWSSDAALATAAIYESAQ 120 Query: 133 IPQIGFTAGTSQWTSQGNRMPFRVVGGTAEVGLTMAEVITTDLKGKRVFVVHNDSAYSNA 192 IPQIGFTA +SQWT GNRMPFRVVGGT E+ T+AEV T L+G+R+FV+ +D+AYS A Sbjct: 121 IPQIGFTATSSQWTGMGNRMPFRVVGGTRELAATLAEVATRSLQGRRIFVIQSDAAYSRA 180 Query: 193 LTDELTARLVNRPGLTA-TRYLVGRRTTDFNATIKAANQYQADVIVFLALFPQAAAFVEE 251 L D L L A RY VGRR+TDF+A +KAA +QADVIVF+ L+PQA AF++ Sbjct: 181 LADTLVENLGGSAQQIALARYQVGRRSTDFHAALKAAEAHQADVIVFVGLYPQARAFIDG 240 Query: 252 VRRSGSEAKVLLVGGASSLSFGEAALPQAYVLEYELAREQCPRWKAFTQAYMRRYNAAPS 311 R+ + A++LL GGAS+LS + +VLEYE+AR CP+WK TQ Y RR+ AAP+ Sbjct: 241 ANRTRTTARLLLTGGASNLSLPAPLELRLHVLEYEIARPHCPQWKVVTQTYQRRFGAAPT 300 Query: 312 PYSYYAYDAASVLIAAILQSDSTDGEKIAASLRQLRHAGLSGPISFAAGGANAAPRFRLY 371 YS+YAYDAASVL AAI+Q+ S +G+KIA +L ++RHAGL G +SF A GANA PR+ L Sbjct: 301 TYSFYAYDAASVLTAAIVQAGSDNGDKIATALHRMRHAGLHGTLSFDATGANAHPRYTLL 360 Query: 372 QYRSRGQWQQVGVFPRGAG 390 +Y+ R WQ V VF G+ Sbjct: 361 RYQER--WQAVEVFAPGSA 377 >ref|YP_001478782.1| extracellular ligand-binding receptor [Serratia proteamaculans 568] gb|ABV41654.1| Extracellular ligand-binding receptor [Serratia proteamaculans 568] Length = 386 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 168/350 (48%), Gaps = 8/350 (2%) Query: 43 VTLGLSAWLTQP---IVQSAWHGAELAVEDANTLAAR-KKSSCRFRLLAQDDQGTANFGV 98 + +GL+ LT P I + +GA+LA+ DAN K F+LL++DDQ V Sbjct: 32 ILIGLAGPLTGPSARIGKDLENGAQLAIADANAQKPTLKGKPVTFKLLSEDDQSDPRTAV 91 Query: 99 NVAHYFIKEKVAGVIGPWSSDAAMATAELYEAARIPQIGFTAGTSQWTSQGNRMPFRVVG 158 VA + E VAGV+G W++ ++ A +Y A I Q+ A +T QG FRV+G Sbjct: 92 AVAQRLVDEGVAGVVGHWNTGTSIPAARIYHDAGIAQVAPVATGHGYTQQGFDTSFRVMG 151 Query: 159 GTAEVGLTMAEVITTDLKGKRVFVVHNDSAYSNALTDELTARLVNRPGLTATRYLVGRRT 218 + G + LK KR+ V+ + +A+ L DE L + R V +T Sbjct: 152 HDDDGGHYAGDYAVKVLKAKRIAVIDDRTAFGQGLADEFIKSLAAQGLQPVAREYVDDKT 211 Query: 219 TDFNATIKAANQYQADVIVFLALFPQAAAFVEEVRRSGSEAKVLLVGGASSLSFGEAALP 278 DF+A + AD+I F + QAA +++ G +++ GG S +F A Sbjct: 212 VDFSAVLTTVRSKNADLIFFGGVDSQAAPLARRIKQLGMNTQLMGAGGFVSQTFLTLAQK 271 Query: 279 QA---YVLEYELAREQCPRWKAFTQAYMRRYNAAPSPYSYYAYDAASVLIAAILQSDSTD 335 + LE L EQ P KAF QAY RY ++ +AYDA VLIAAI Q+ S D Sbjct: 272 EGEGVVALEPGLPLEQMPGGKAFEQAYRDRYKTHIELHAPFAYDATRVLIAAIEQAGSAD 331 Query: 336 GEKIAASLRQLRHAGLSGPISFAAGGANAAPRFRLYQYRSRGQWQQVGVF 385 LR + + G++G I+F A G P F LY+ G+WQ V Sbjct: 332 PADYLPKLRAIHYQGVTGTIAFDAQGNLQQPSFTLYRVVD-GKWQPQSVL 380 >ref|YP_004500988.1| extracellular ligand-binding receptor [Serratia sp. AS12] ref|YP_004505941.1| extracellular ligand-binding receptor [Serratia sp. AS9] gb|AEF45680.1| Extracellular ligand-binding receptor [Serratia sp. AS9] gb|AEF50631.1| Extracellular ligand-binding receptor [Serratia sp. AS12] gb|AEG28338.1| Extracellular ligand-binding receptor [Serratia sp. AS13] Length = 387 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 179/381 (46%), Gaps = 9/381 (2%) Query: 13 MRRITTTMALFIAIWLPCTMTPA-RSEQLRYVTLGLSAWLTQP---IVQSAWHGAELAVE 68 M +IT L +A + T+ A S+ + +GL+ LT P I + +GA+LA+ Sbjct: 1 MNKITRFKPLALATAVLATLGAAVPSQAADTILIGLAGPLTGPSARIGKDLENGAQLAIA 60 Query: 69 DANTLAAR-KKSSCRFRLLAQDDQGTANFGVNVAHYFIKEKVAGVIGPWSSDAAMATAEL 127 DAN F+LL++DDQ V VA + E VAGV+G W++ ++ A + Sbjct: 61 DANAQKPTLNGKPVTFKLLSEDDQSDPRTAVAVAQRLVDEGVAGVVGHWNTGTSIPAARI 120 Query: 128 YEAARIPQIGFTAGTSQWTSQGNRMPFRVVGGTAEVGLTMAEVITTDLKGKRVFVVHNDS 187 Y A I Q+ A +T QG FRV+G + G E LK KR+ V+ + + Sbjct: 121 YHDAGIAQVAPVATGHAYTQQGFDTSFRVMGHDDDGGNYAGEYAVKVLKAKRIAVIDDRT 180 Query: 188 AYSNALTDELTARLVNRPGLTATRYLVGRRTTDFNATIKAANQYQADVIVFLALFPQAAA 247 A+ L DE L + R V +T DF+A + AD+I F + QAA Sbjct: 181 AFGQGLADEFIKSLAAQGMQPVAREYVDDKTVDFSAVLTTVRSKNADLIFFGGVDSQAAP 240 Query: 248 FVEEVRRSGSEAKVLLVGGASSLSFGEAALPQA---YVLEYELAREQCPRWKAFTQAYMR 304 +++ G +++ GG S +F A + LE L EQ P KAF QAY Sbjct: 241 LARRIKQLGMNTQLMGAGGFVSQTFLTLAQKEGEGVVALEPGLPLEQMPGGKAFEQAYRD 300 Query: 305 RYNAAPSPYSYYAYDAASVLIAAILQSDSTDGEKIAASLRQLRHAGLSGPISFAAGGANA 364 RY ++ +AYDA VLIAAI Q+ S + LR + + G++G I+F G Sbjct: 301 RYKTHIELHAPFAYDATRVLIAAIEQAGSANPADYLPKLRAIHYQGVTGNIAFDPQGNLQ 360 Query: 365 APRFRLYQYRSRGQWQQVGVF 385 P F LY+ G+WQ V Sbjct: 361 QPSFTLYKVVD-GKWQPQSVL 380 >ref|ZP_06190288.1| extracellular ligand-binding receptor [Serratia odorifera 4Rx13] gb|EFA16984.1| extracellular ligand-binding receptor [Serratia odorifera 4Rx13] Length = 387 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 116/353 (32%), Positives = 170/353 (48%), Gaps = 14/353 (3%) Query: 43 VTLGLSAWLTQP---IVQSAWHGAELAVEDAN----TLAARKKSSCRFRLLAQDDQGTAN 95 + +GL+ LT P I + +GA+LA+ DAN TL + + F+LL++DDQ Sbjct: 32 ILIGLAGPLTGPSARIGKDLENGAQLAIADANAQKPTLNGKPVT---FKLLSEDDQSDPR 88 Query: 96 FGVNVAHYFIKEKVAGVIGPWSSDAAMATAELYEAARIPQIGFTAGTSQWTSQGNRMPFR 155 V VA + E VAGV+G W++ ++ A +Y A I Q+ A +T QG FR Sbjct: 89 TAVAVAQRLVDEGVAGVVGHWNTGTSIPAARIYHDASIAQVAPVATGHAYTQQGFDTSFR 148 Query: 156 VVGGTAEVGLTMAEVITTDLKGKRVFVVHNDSAYSNALTDELTARLVNRPGLTATRYLVG 215 V+G + G E LK KR+ V+ + +A+ L DE L + R V Sbjct: 149 VMGHDDDGGNYAGEYAVKVLKAKRIAVIDDRTAFGQGLADEFIKSLAAQGIQPVAREYVD 208 Query: 216 RRTTDFNATIKAANQYQADVIVFLALFPQAAAFVEEVRRSGSEAKVLLVGGASSLSFGEA 275 +T DF+A + AD+I F + QAA +++ G +++ GG S +F Sbjct: 209 DKTVDFSAVLTTVRSKNADLIFFGGVDSQAAPLARRIKQLGMNTQLMGAGGFVSQTFLTL 268 Query: 276 ALPQA---YVLEYELAREQCPRWKAFTQAYMRRYNAAPSPYSYYAYDAASVLIAAILQSD 332 A + LE L EQ P KAF QAY RY ++ +AYDA VLIAAI Q+ Sbjct: 269 AQKEGEGVVALEPGLPLEQMPGGKAFEQAYRDRYKTHIELHAPFAYDATRVLIAAIEQAG 328 Query: 333 STDGEKIAASLRQLRHAGLSGPISFAAGGANAAPRFRLYQYRSRGQWQQVGVF 385 S + LR + + G++G I+F G P F LY+ G+WQ V Sbjct: 329 SANPADYLPKLRAIHYQGVTGNIAFDPQGNLQQPSFTLYKVVD-GKWQPQSVL 380 >ref|ZP_05967743.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] gb|EFC56733.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 385 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 175/348 (50%), Gaps = 14/348 (4%) Query: 43 VTLGLSAWLTQP---IVQSAWHGAELAVEDAN----TLAARKKSSCRFRLLAQDDQGTAN 95 V +GL+ LT P I + +GA+LA++D N T+ + + F+L ++DDQ Sbjct: 31 VVIGLAGPLTGPSARIGKDLENGAQLAIDDINKQHPTIGGK---AVTFKLQSEDDQSDPR 87 Query: 96 FGVNVAHYFIKEKVAGVIGPWSSDAAMATAELYEAARIPQIGFTAGTSQWTSQGNRMPFR 155 V VA + VAGV+G W++ ++ A +Y A I Q+ A +T QG FR Sbjct: 88 TAVAVAQRLVDSGVAGVVGHWNTGTSIPAARVYHDAGIAQVAPVATGHAYTKQGFDTSFR 147 Query: 156 VVGGTAEVGLTMAEVITTDLKGKRVFVVHNDSAYSNALTDELTARLVNRPGLTATRYLVG 215 V+G + G + LK KR+ V+ + +A+ L DE L + R V Sbjct: 148 VMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQGLADEFIKSLDAQGVKIVDRQYVD 207 Query: 216 RRTTDFNATIKAANQYQADVIVFLALFPQAAAFVEEVRRSGSEAKVLLVGGASSLSFGEA 275 +T DF+A + A AD+I F + QAA +++ G +A ++ GG S +F + Sbjct: 208 DKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARRIKQLGMKATLMGAGGFVSQTFLQL 267 Query: 276 ALPQA---YVLEYELAREQCPRWKAFTQAYMRRYNAAPSPYSYYAYDAASVLIAAILQSD 332 A + LE L EQ P KAF QAY RY+ ++ +AYDA VL+AA+ ++D Sbjct: 268 AQKEGEGVVALEPGLPVEQMPGGKAFEQAYQSRYHTHIELHAPFAYDATRVLVAAMEKAD 327 Query: 333 STDGEKIAASLRQLRHAGLSGPISFAAGGANAAPRFRLYQYRSRGQWQ 380 S D +LR + ++G++G I+F G +P F +Y+ G+WQ Sbjct: 328 SVDPADYLPALRAISYSGVTGQIAFDKEGNLTSPSFTVYKVVD-GKWQ 374