BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5118.p (587 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774726.1| methyl-accepting chemotaxis domain-containin... 807 0.0 ref|YP_001066082.1| methyl-accepting chemotaxis protein [Burkhol... 438 e-120 ref|ZP_04816880.1| methyl-accepting chemotaxis protein [Burkhold... 437 e-120 ref|ZP_04904829.1| methyl-accepting chemotaxis protein [Burkhold... 437 e-120 ref|ZP_01769068.1| methyl-accepting chemotaxis protein [Burkhold... 436 e-120 >ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62818.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 479/558 (85%), Positives = 520/558 (93%) Query: 30 MKTSLIGRFTIRQIFIMLTAVISLLMATIVLIAMALERSDAELNAANENRYASFQLATEL 89 MK SL+ RF+IRQIFIMLTAVI++LM IVL A+A++R DA LNAANE+RYASF LATEL Sbjct: 1 MKISLVSRFSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATEL 60 Query: 90 RQSSDDLTRLARTYVITADPAYEKQYQAILDIRDGKKPRPENYGRIYWDFVAADGKPPRP 149 RQSSDDLTRLARTYV+T DP+YE+QY+AILDIR+GKK RPE+YGRIYWDFVAADGK PRP Sbjct: 61 RQSSDDLTRLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRP 120 Query: 150 DSSRSVALIALMREAGFTDAELAKLSEAKANSDALVKTETMAMNMVKGLYEDAQGNFTRR 209 DS++ VAL LMR AGFT AE+ KL EAK NSDALVKTE +AMNMVKGLY DAQGNFT+R Sbjct: 121 DSNQHVALTDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKR 180 Query: 210 GEPDLVRARELMHDHAYHVNKARIMRPVDQFFAMLDARTLAQVEDARAHSATMALIFYAL 269 +PDL +ARELMH+HAYHV KA+IMRPVD+FFA+LDART QVE ARA + MA +FY+L Sbjct: 181 ADPDLAQARELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSL 240 Query: 270 MGVAVVVLACTLMLVYKAIRDPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIM 329 + +A+VVLACTLMLVY AIR+PLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIM Sbjct: 241 IAIALVVLACTLMLVYHAIRNPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIM 300 Query: 330 QSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEEQAGSLEETASAMEELTSTVKQN 389 QSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTE+QA SLEETAS+MEELTSTVKQN Sbjct: 301 QSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQN 360 Query: 390 AGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILA 449 AGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILA Sbjct: 361 AGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILA 420 Query: 450 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAG 509 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAG Sbjct: 421 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAG 480 Query: 510 STMREVVESVQRVTEIIAGISSASQEQSAGVEQIQQAISQMDNVTQQNAALVEQASAAAE 569 STMREVVESVQRVTEII GIS+ASQEQ++G+EQIQQAI+QMD VTQQNAALVEQASAA+E Sbjct: 481 STMREVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASE 540 Query: 570 SMQEQAHKLSGLVGAFKT 587 SMQ QAHKL+ LVGAFKT Sbjct: 541 SMQMQAHKLTDLVGAFKT 558 >ref|YP_001066082.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1106a] gb|ABN88760.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1106a] Length = 728 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 281/583 (48%), Positives = 388/583 (66%), Gaps = 6/583 (1%) Query: 9 LSRHARRRPVPIEPFLSTGISMKTSLIGRFTIRQIFIMLTAVISLLMATIVLIAMALERS 68 L + A RP+ ++ + F++R+ +L ++++ I L L+ + Sbjct: 136 LIQRASSRPIYSGRRVALKPENTVGFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAA 195 Query: 69 DAELNAANENRYASFQLATELRQSSDDLTRLARTYVITADPAYEKQYQAILDIRDGKKPR 128 + + A + RY S QLA ELR+SSDDLTRLARTYV T D +E+QY IL IR GK PR Sbjct: 196 NHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEILAIRSGKAPR 255 Query: 129 PENYGRIYWDFVAADGKPPRPDSSRSVALIALMREAGFTDAELAKLSEAKANSDALVKTE 188 P +Y RIYWDF AAD +P R + +++L +M+ AGFTD E AKL +A+ NS+ LVKTE Sbjct: 256 PLDYDRIYWDFRAAD-EPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTE 314 Query: 189 TMAMNMVKGLYEDAQGNFTRRGEPDLVRARELMHDHAYHVNKARIMRPVDQFFAMLDART 248 T+AMN+VKGL D G+FT++G PDL +AR LM D YH KA+IM P+D F +LDART Sbjct: 315 TVAMNLVKGLTPDDAGHFTKQGPPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDART 374 Query: 249 LAQVEDARAHSATMALIFYALMGVAVVVLACTLMLVYKAIRDPLAHAASVARRVAHGDLT 308 + A+A + T +I A+ + A L +++K + L AAS A RVA GDLT Sbjct: 375 EGAIARAQASAQTWKIISAAVAIGILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLT 434 Query: 309 A-----QIDPAIKGETGELLEALTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSS 363 + ++DP K E ++ AL M GL IV DVR+G I T+++EI +G DLS+ Sbjct: 435 SHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTIATASHEIMAGNNDLSA 494 Query: 364 RTEEQAGSLEETASAMEELTSTVKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGA 423 RTE+QA SL+ETA++M ELT+TVK N NAR A+ + + A +G V ++V T+ A Sbjct: 495 RTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNA 554 Query: 424 INESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 483 I+ +S +I DII++I+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS++A Sbjct: 555 ISTNSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSA 614 Query: 484 AKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIIAGISSASQEQSAGVEQI 543 AKEIK LI+ S+ V G + +E G + EV ++++RV +++ I++AS+EQ+ G+EQ+ Sbjct: 615 AKEIKDLIETSIDTVRDGVSKADEVGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQV 674 Query: 544 QQAISQMDNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFK 586 A+SQMD VTQQNAALVEQA+AA+++M +QA L FK Sbjct: 675 DAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFK 717 >ref|ZP_04816880.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1106b] gb|EES27505.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1106b] Length = 711 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 281/583 (48%), Positives = 388/583 (66%), Gaps = 6/583 (1%) Query: 9 LSRHARRRPVPIEPFLSTGISMKTSLIGRFTIRQIFIMLTAVISLLMATIVLIAMALERS 68 L + A RP+ ++ + F++R+ +L ++++ I L L+ + Sbjct: 119 LIQRASSRPIYSGRRVALKPENTVGFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAA 178 Query: 69 DAELNAANENRYASFQLATELRQSSDDLTRLARTYVITADPAYEKQYQAILDIRDGKKPR 128 + + A + RY S QLA ELR+SSDDLTRLARTYV T D +E+QY IL IR GK PR Sbjct: 179 NHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEILAIRSGKAPR 238 Query: 129 PENYGRIYWDFVAADGKPPRPDSSRSVALIALMREAGFTDAELAKLSEAKANSDALVKTE 188 P +Y RIYWDF AAD +P R + +++L +M+ AGFTD E AKL +A+ NS+ LVKTE Sbjct: 239 PLDYDRIYWDFRAAD-EPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTE 297 Query: 189 TMAMNMVKGLYEDAQGNFTRRGEPDLVRARELMHDHAYHVNKARIMRPVDQFFAMLDART 248 T+AMN+VKGL D G+FT++G PDL +AR LM D YH KA+IM P+D F +LDART Sbjct: 298 TVAMNLVKGLTPDDAGHFTKQGPPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDART 357 Query: 249 LAQVEDARAHSATMALIFYALMGVAVVVLACTLMLVYKAIRDPLAHAASVARRVAHGDLT 308 + A+A + T +I A+ + A L +++K + L AAS A RVA GDLT Sbjct: 358 EGAIARAQASAQTWKIISAAVAIGILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLT 417 Query: 309 A-----QIDPAIKGETGELLEALTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSS 363 + ++DP K E ++ AL M GL IV DVR+G I T+++EI +G DLS+ Sbjct: 418 SHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTIATASHEIMAGNNDLSA 477 Query: 364 RTEEQAGSLEETASAMEELTSTVKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGA 423 RTE+QA SL+ETA++M ELT+TVK N NAR A+ + + A +G V ++V T+ A Sbjct: 478 RTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNA 537 Query: 424 INESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 483 I+ +S +I DII++I+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS++A Sbjct: 538 ISTNSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSA 597 Query: 484 AKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIIAGISSASQEQSAGVEQI 543 AKEIK LI+ S+ V G + +E G + EV ++++RV +++ I++AS+EQ+ G+EQ+ Sbjct: 598 AKEIKDLIETSIDTVRDGVSKADEVGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQV 657 Query: 544 QQAISQMDNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFK 586 A+SQMD VTQQNAALVEQA+AA+++M +QA L FK Sbjct: 658 DAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFK 700 >ref|ZP_04904829.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei S13] gb|EDS87841.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei S13] Length = 650 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 281/583 (48%), Positives = 388/583 (66%), Gaps = 6/583 (1%) Query: 9 LSRHARRRPVPIEPFLSTGISMKTSLIGRFTIRQIFIMLTAVISLLMATIVLIAMALERS 68 L + A RP+ ++ + F++R+ +L ++++ I L L+ + Sbjct: 58 LIQRASSRPIYSGRRVALKPENTVGFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAA 117 Query: 69 DAELNAANENRYASFQLATELRQSSDDLTRLARTYVITADPAYEKQYQAILDIRDGKKPR 128 + + A + RY S QLA ELR+SSDDLTRLARTYV T D +E+QY IL IR GK PR Sbjct: 118 NHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEILAIRSGKAPR 177 Query: 129 PENYGRIYWDFVAADGKPPRPDSSRSVALIALMREAGFTDAELAKLSEAKANSDALVKTE 188 P +Y RIYWDF AAD +P R + +++L +M+ AGFTD E AKL +A+ NS+ LVKTE Sbjct: 178 PLDYDRIYWDFRAAD-EPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTE 236 Query: 189 TMAMNMVKGLYEDAQGNFTRRGEPDLVRARELMHDHAYHVNKARIMRPVDQFFAMLDART 248 T+AMN+VKGL D G+FT++G PDL +AR LM D YH KA+IM P+D F +LDART Sbjct: 237 TVAMNLVKGLTPDDAGHFTKQGPPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDART 296 Query: 249 LAQVEDARAHSATMALIFYALMGVAVVVLACTLMLVYKAIRDPLAHAASVARRVAHGDLT 308 + A+A + T +I A+ + A L +++K + L AAS A RVA GDLT Sbjct: 297 EGAIARAQASAQTWKIISAAVAIGILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLT 356 Query: 309 A-----QIDPAIKGETGELLEALTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSS 363 + ++DP K E ++ AL M GL IV DVR+G I T+++EI +G DLS+ Sbjct: 357 SHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTIATASHEIMAGNNDLSA 416 Query: 364 RTEEQAGSLEETASAMEELTSTVKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGA 423 RTE+QA SL+ETA++M ELT+TVK N NAR A+ + + A +G V ++V T+ A Sbjct: 417 RTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNA 476 Query: 424 INESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 483 I+ +S +I DII++I+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS++A Sbjct: 477 ISTNSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSA 536 Query: 484 AKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIIAGISSASQEQSAGVEQI 543 AKEIK LI+ S+ V G + +E G + EV ++++RV +++ I++AS+EQ+ G+EQ+ Sbjct: 537 AKEIKDLIETSIDTVRDGVSKADEVGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQV 596 Query: 544 QQAISQMDNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFK 586 A+SQMD VTQQNAALVEQA+AA+++M +QA L FK Sbjct: 597 DAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFK 639 >ref|ZP_01769068.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 305] gb|EBA46490.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 305] Length = 744 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 281/583 (48%), Positives = 388/583 (66%), Gaps = 6/583 (1%) Query: 9 LSRHARRRPVPIEPFLSTGISMKTSLIGRFTIRQIFIMLTAVISLLMATIVLIAMALERS 68 L + A RP+ ++ + F++R+ +L ++++ I L L+ + Sbjct: 152 LIQRASSRPIYSGRRVALKPENTVGFLNTFSLRRYASLLLGLLAVAAVAIGLCQWRLDAA 211 Query: 69 DAELNAANENRYASFQLATELRQSSDDLTRLARTYVITADPAYEKQYQAILDIRDGKKPR 128 + + A + RY S QLA ELR+SSDDLTRLARTYV T D +E+QY IL IR GK PR Sbjct: 212 NHRVAQAYQQRYVSTQLANELRRSSDDLTRLARTYVATGDAKWEQQYNEILAIRSGKAPR 271 Query: 129 PENYGRIYWDFVAADGKPPRPDSSRSVALIALMREAGFTDAELAKLSEAKANSDALVKTE 188 P +Y RIYWDF AAD +P R + +++L +M+ AGFTD E AKL +A+ NS+ LVKTE Sbjct: 272 PLDYDRIYWDFRAAD-EPLRAEQGETISLQEMMKRAGFTDEEFAKLHDAEQNSNDLVKTE 330 Query: 189 TMAMNMVKGLYEDAQGNFTRRGEPDLVRARELMHDHAYHVNKARIMRPVDQFFAMLDART 248 T+AMN+VKGL D G+FT++G PDL +AR LM D YH KA+IM P+D F +LDART Sbjct: 331 TVAMNLVKGLTPDDAGHFTKQGPPDLEKARALMFDANYHRFKAKIMHPIDDFLKLLDART 390 Query: 249 LAQVEDARAHSATMALIFYALMGVAVVVLACTLMLVYKAIRDPLAHAASVARRVAHGDLT 308 + A+A + T +I A+ + A L +++K + L AAS A RVA GDLT Sbjct: 391 EGAIARAQASAQTWKIISAAVAIGILAFFALMLHMMFKRVLAGLEAAASTASRVAAGDLT 450 Query: 309 A-----QIDPAIKGETGELLEALTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSS 363 + ++DP K E ++ AL M GL IV DVR+G I T+++EI +G DLS+ Sbjct: 451 SHFDAHRVDPQAKDEISRVMRALQTMNDGLVRIVTDVRSGTDTIATASHEIMAGNNDLSA 510 Query: 364 RTEEQAGSLEETASAMEELTSTVKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGA 423 RTE+QA SL+ETA++M ELT+TVK N NAR A+ + + A +G V ++V T+ A Sbjct: 511 RTEQQAASLQETAASMSELTATVKLNLENARQANMIGSNAVSTVEKGSVSVEQLVTTVNA 570 Query: 424 INESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 483 I+ +S +I DII++I+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS++A Sbjct: 571 ISTNSGKIADIISLIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSSA 630 Query: 484 AKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIIAGISSASQEQSAGVEQI 543 AKEIK LI+ S+ V G + +E G + EV ++++RV +++ I++AS+EQ+ G+EQ+ Sbjct: 631 AKEIKDLIETSIDTVRDGVSKADEVGQHIVEVKQAIRRVADLVGEITAASEEQTRGIEQV 690 Query: 544 QQAISQMDNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFK 586 A+SQMD VTQQNAALVEQA+AA+++M +QA L FK Sbjct: 691 DAAVSQMDRVTQQNAALVEQAAAASKAMDDQAGNLRAAASIFK 733