BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5117.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777338.1| two component transmembrane sensor histidine... 548 e-154 ref|YP_003882270.1| Two-component hybrid sensor and regulator [D... 387 e-105 ref|YP_003005076.1| histidine kinase [Dickeya zeae Ech1591] >gi|... 383 e-104 ref|YP_003332912.1| integral membrane sensor signal transduction... 380 e-103 ref|ZP_08868427.1| Periplasmic Sensor Signal Transduction Histid... 348 9e-94 >ref|YP_003777338.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65430.1| two component transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 361 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 287/361 (79%), Positives = 319/361 (88%), Gaps = 1/361 (0%) Query: 1 MKPGIDLLTLWRGKGLARQIISSIAILALTIMLMVLLGSYAFYSTLFIFLPTALSAPDSW 60 MK G ++WR KGLARQI++++ +LA+ IMLMVLLGSYAFYST+FIF PTA+SAPDSW Sbjct: 1 MKHGT-FFSIWRSKGLARQIVTAVVVLAVAIMLMVLLGSYAFYSTMFIFFPTAMSAPDSW 59 Query: 61 LPSPAEWGWIFVTTLAGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQ 120 LPSP EWGWI VTTL G++IA+WVA+RLSRRILTPLNSVATSLRRVAQGDL+ARAAA+RQ Sbjct: 60 LPSPVEWGWILVTTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQ 119 Query: 121 PLDEASQLISDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDP 180 PLDEA QLI+DFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGL+DGVFQP+P Sbjct: 120 PLDEAWQLINDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEP 179 Query: 181 ALFSSLLVQVEGLGRLIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGF 240 ALFSSLL QVEGLGRLIEDLRIVGLAESGHLR+QLQ+ DL+ +IMTVLKACE AL +KGF Sbjct: 180 ALFSSLLAQVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGF 239 Query: 241 TLTLALGAERPACDPVRIRQALLALLENALQHATPGPLRISTLVVDGQHCLRVEDSGPGL 300 L L G +R CDPVRIRQALLALLEN LQHA+PGPLRIST + G H L VEDSGPG+ Sbjct: 240 RLLLETGVQRSRCDPVRIRQALLALLENVLQHASPGPLRISTRSLAGMHSLCVEDSGPGI 299 Query: 301 SASDAQRIFDAFERGPRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRW 360 +ASDAQ IFDAF RG R+GDA KGSGLGLAVVR IASAH GT DC+ S LGGACFE+RW Sbjct: 300 AASDAQMIFDAFHRGARAGDAQQKGSGLGLAVVRTIASAHHGTADCRASELGGACFEVRW 359 Query: 361 P 361 P Sbjct: 360 P 360 >ref|YP_003882270.1| Two-component hybrid sensor and regulator [Dickeya dadantii 3937] gb|ADM97713.1| Two-component hybrid sensor and regulator [Dickeya dadantii 3937] Length = 375 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 210/346 (60%), Positives = 255/346 (73%) Query: 16 LARQIISSIAILALTIMLMVLLGSYAFYSTLFIFLPTALSAPDSWLPSPAEWGWIFVTTL 75 L+RQI+ S+ +LAL++ LM+++GSY FYS + P +LS+ D +P+ EW W+ VTTL Sbjct: 7 LSRQIVRSMTLLALSVTLMMVVGSYIFYSLMLTISPESLSSNDQLMPTTMEWFWMAVTTL 66 Query: 76 AGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQPLDEASQLISDFNAM 135 + IAV +AIRL+RRIL PLNSVA SLR++A+G+L ARA D L EA+ L+ DFN M Sbjct: 67 LALVIAVVLAIRLARRILVPLNSVAHSLRQIAEGELNARAETDDYSLGEAALLVRDFNTM 126 Query: 136 AERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDPALFSSLLVQVEGLGR 195 AERLER+ QER FWNAAIAHELRTPVTILRGRLQGL +GVF+PD LF +LL QVEGLGR Sbjct: 127 AERLERMAQERAFWNAAIAHELRTPVTILRGRLQGLTEGVFEPDIGLFRNLLTQVEGLGR 186 Query: 196 LIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGFTLTLALGAERPACDP 255 LIEDLR+VGLAESGHL ++ + L E+ V+ A E L GFTL+LAL + CDP Sbjct: 187 LIEDLRVVGLAESGHLELRWTRTRLSDEVTAVVSAFEPTLQHDGFTLSLALEDQVVQCDP 246 Query: 256 VRIRQALLALLENALQHATPGPLRISTLVVDGQHCLRVEDSGPGLSASDAQRIFDAFERG 315 VRIRQALLALLENA +HA PG L I V G+ L VED GPG+ A +IF+AF+RG Sbjct: 247 VRIRQALLALLENAQKHADPGRLCIRAGVDGGRAFLSVEDDGPGIDPQLADQIFEAFQRG 306 Query: 316 PRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRWP 361 +S +KGSGLGLAVV+AIA AHGG C PSP GGA FELRWP Sbjct: 307 EQSRAGNSKGSGLGLAVVQAIAQAHGGQASCCPSPSGGARFELRWP 352 >ref|YP_003005076.1| histidine kinase [Dickeya zeae Ech1591] gb|ACT07597.1| histidine kinase [Dickeya zeae Ech1591] Length = 374 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 206/346 (59%), Positives = 250/346 (72%) Query: 16 LARQIISSIAILALTIMLMVLLGSYAFYSTLFIFLPTALSAPDSWLPSPAEWGWIFVTTL 75 L+RQI+ S+ +LAL+I L++++GSY FY+ + P +LS D W+P+ EW W+ TTL Sbjct: 7 LSRQIMRSMTLLALSITLLMVVGSYVFYAFMLAISPESLSLSDQWMPTTLEWFWMVGTTL 66 Query: 76 AGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQPLDEASQLISDFNAM 135 + IAV +AIRL+RRIL PLNSVA SLR++A+G+L ARA D L EA+ L+ DFN M Sbjct: 67 LALVIAVVLAIRLARRILVPLNSVAHSLRQIAEGELNARAETDDYSLGEAALLVRDFNTM 126 Query: 136 AERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDPALFSSLLVQVEGLGR 195 AERLER+ QER FWNAAIAHELRTPVTILRGRLQGL +GVF+PD LF +LL+QVEGLGR Sbjct: 127 AERLERMAQERAFWNAAIAHELRTPVTILRGRLQGLTEGVFEPDIGLFRNLLMQVEGLGR 186 Query: 196 LIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGFTLTLALGAERPACDP 255 LIEDLR+VGLAESGHL ++ L E+ V+ A E L GF L+L L CDP Sbjct: 187 LIEDLRVVGLAESGHLELRWTPTRLSDEVTAVVNAFEPTLQSAGFNLSLVLEDPVVQCDP 246 Query: 256 VRIRQALLALLENALQHATPGPLRISTLVVDGQHCLRVEDSGPGLSASDAQRIFDAFERG 315 VRIRQALLALLENA +HA GPL + V G L VEDSGPG+ A++IF+AF RG Sbjct: 247 VRIRQALLALLENAQKHADAGPLCVRAGVDRGVAYLSVEDSGPGIDPPFAEQIFEAFARG 306 Query: 316 PRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRWP 361 S +KGSGLGLAVV+AIA AHGG C P+P GGA FELRWP Sbjct: 307 AASRAGNSKGSGLGLAVVQAIAQAHGGQASCCPAPSGGALFELRWP 352 >ref|YP_003332912.1| integral membrane sensor signal transduction histidine kinase [Dickeya dadantii Ech586] gb|ACZ76207.1| integral membrane sensor signal transduction histidine kinase [Dickeya dadantii Ech586] Length = 358 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 210/346 (60%), Positives = 253/346 (73%) Query: 16 LARQIISSIAILALTIMLMVLLGSYAFYSTLFIFLPTALSAPDSWLPSPAEWGWIFVTTL 75 L+RQII S+ +LAL++ LM+++GSY FY + P +LS + W+P+ AEW W+ T+L Sbjct: 7 LSRQIIRSMILLALSVTLMMVVGSYLFYGLMLSVSPESLSPDNQWMPTTAEWFWMGGTSL 66 Query: 76 AGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQPLDEASQLISDFNAM 135 + IAV +A+RL+RRIL PLNSVA SLR++A+G+L ARA D L EA+ L+ DFN M Sbjct: 67 LALLIAVVLAVRLARRILVPLNSVAHSLRQIAEGELKARAETDDYSLGEAALLVRDFNTM 126 Query: 136 AERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDPALFSSLLVQVEGLGR 195 AERLER++QER FWNAAIAHELRTPVTILRGRLQGL +GVF+PD LF +LL QVEGLGR Sbjct: 127 AERLERMEQERAFWNAAIAHELRTPVTILRGRLQGLTEGVFEPDIGLFRNLLTQVEGLGR 186 Query: 196 LIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGFTLTLALGAERPACDP 255 LIEDLR+VGLAESGHL ++ L E+ V+ A L GFTL+LAL CDP Sbjct: 187 LIEDLRVVGLAESGHLELRWMPTRLSDEVTAVVNAFGPVLQQAGFTLSLALDDHPVPCDP 246 Query: 256 VRIRQALLALLENALQHATPGPLRISTLVVDGQHCLRVEDSGPGLSASDAQRIFDAFERG 315 VRIRQA+LALLENA +HATPGPL I V Q LRVEDSGPG++ A RIF+AF RG Sbjct: 247 VRIRQAVLALLENAQKHATPGPLGIQAGVEQEQAFLRVEDSGPGIAPDFAGRIFEAFTRG 306 Query: 316 PRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRWP 361 S KGSGLGLAVV+AIA AHGG C P+P GGA FELRWP Sbjct: 307 EPSHPDNTKGSGLGLAVVQAIAQAHGGQARCYPAPSGGAVFELRWP 352 >ref|ZP_08868427.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Azospirillum amazonense Y2] gb|EGY01964.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Azospirillum amazonense Y2] Length = 353 Score = 348 bits (892), Expect = 9e-94, Method: Composition-based stats. Identities = 196/350 (56%), Positives = 252/350 (72%), Gaps = 4/350 (1%) Query: 12 RGKGLARQIISSIAILALTIMLMVLLGSYAFYSTLFIFLPTALSAPDSWLPSPAEWGWIF 71 +G GL RQI+ S+ +LA +++L+ + GSY FY+ + PT++S D +P+PAE W+ Sbjct: 7 KGSGLRRQIVLSMMVLAFSVVLLAICGSYVFYAIFMTYSPTSIS--DGLVPAPAELTWMA 64 Query: 72 VTTLAGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQPLDEASQLISD 131 +T LA + +A VA+RL+RRIL PLNSVA +LRRVA+GDL+ARA AD + EA++L+SD Sbjct: 65 MTMLAALVLATGVAVRLARRILAPLNSVADNLRRVAEGDLSARAIADEHSMGEATRLVSD 124 Query: 132 FNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDPALFSSLLVQVE 191 FN +AERLER+ ++R FWNAAIAHELRTPVT+LRGRLQGLA+GVFQP P L S LL QVE Sbjct: 125 FNNLAERLERMARDRAFWNAAIAHELRTPVTVLRGRLQGLAEGVFQPSPQLASGLLSQVE 184 Query: 192 GLGRLIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGFTLTLALGAERP 251 GL RL+EDLR++ L ESG L +QL+Q DL EI + + A E L GFT +L LG Sbjct: 185 GLSRLVEDLRLLSLDESGRLTLQLEQCDLAAEIRSTVNAFEPTLRAAGFTPSLELGEFEA 244 Query: 252 ACDPVRIRQALLALLENALQHATPGPLRISTLVVDGQHCLRVEDSGPGLSASDAQRIFDA 311 CDPVR+RQALLALL+NA+ HA+PGPLRI G L VED+GPG+ +R+F+A Sbjct: 245 ICDPVRMRQALLALLDNAVHHASPGPLRIRLFESAGMAHLEVEDTGPGIPVGLIERVFEA 304 Query: 312 FERGPRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRWP 361 F GD + +GSGLGLAVV+A+A AHGG C+ S GG FEL WP Sbjct: 305 FHS--GHGDGSGRGSGLGLAVVKALARAHGGDAMCRASGTGGTVFELVWP 352