BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5116.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777337.1| two component response regulator protein [He... 428 e-118 ref|YP_839437.1| two component transcriptional regulator [Burkho... 345 3e-93 ref|YP_002232744.1| two-component regulatory system response reg... 345 3e-93 ref|YP_624897.1| two component transcriptional regulator [Burkho... 345 3e-93 ref|YP_001778003.1| two component transcriptional regulator [Bur... 344 7e-93 >ref|YP_003777337.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65429.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 237/266 (89%), Positives = 247/266 (92%), Gaps = 3/266 (1%) Query: 1 MRMRFARYNDGVLMENAR---MAATQVKAGEAAPATGALILIAEDAPEIAEILAAYLARS 57 M + ARYNDGVLME R M + A PA GALILIAEDAPEIAEILAAYLAR+ Sbjct: 1 MSVMIARYNDGVLMEKERLSPMHTGEPAPTTAPPAAGALILIAEDAPEIAEILAAYLARN 60 Query: 58 GMRSVHAADGARALELHLSLKPDLVLLDIQMPQVNGWQVLAQIRQRDNTPVILLTALDQD 117 GMRSVHAADGARALELHL+LKPDLVLLDIQMPQVNGWQVL+QIRQRDNTPVILLTALDQD Sbjct: 61 GMRSVHAADGARALELHLALKPDLVLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQD 120 Query: 118 VDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSLPREEREDRRILRAPPFVIDFEQHE 177 VDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSLPREER+DR++LR PPFVIDFEQHE Sbjct: 121 VDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHE 180 Query: 178 VVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRAELLATCLPEGDTLERTVDSHVSKL 237 VVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRAELLA+CLPEGDTLERTVDSHVSKL Sbjct: 181 VVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRAELLASCLPEGDTLERTVDSHVSKL 240 Query: 238 RKKLEDLGLAGIPVSIRGVGYRFQQG 263 RKKLEDLG+AGIPVSIRGVGYRFQQG Sbjct: 241 RKKLEDLGIAGIPVSIRGVGYRFQQG 266 >ref|YP_839437.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABK12544.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 245 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 179/235 (76%), Positives = 204/235 (86%) Query: 29 AAPATGALILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQM 88 A AL+LIAED PEIAEIL AY AR+G+R+VHAADG RALELHLSLKPDLVLLD+QM Sbjct: 10 AGQGAQALVLIAEDEPEIAEILTAYFARNGLRTVHAADGRRALELHLSLKPDLVLLDVQM 69 Query: 89 PQVNGWQVLAQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAV 148 P V+GW+VLA+IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVAR +AV Sbjct: 70 PHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVARAQAV 129 Query: 149 LRRSLPREEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRR 208 LRRS+ +E++R+LRA PF ID E HE E++G HTLVLTLTEFKLLAQLARAPRR Sbjct: 130 LRRSMAGSRQEEQRVLRAAPFEIDLEHHEATVEVDGARHTLVLTLTEFKLLAQLARAPRR 189 Query: 209 VFSRAELLATCLPEGDTLERTVDSHVSKLRKKLEDLGLAGIPVSIRGVGYRFQQG 263 VFSRAEL+ATCLPEGD LERTVDSHVSKLRKKL+DLG+AG+P S+RGVGY+ G Sbjct: 190 VFSRAELMATCLPEGDALERTVDSHVSKLRKKLDDLGVAGVPASVRGVGYKLWSG 244 >ref|YP_002232744.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] emb|CAR53967.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 245 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 180/235 (76%), Positives = 205/235 (87%) Query: 29 AAPATGALILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQM 88 A AL+LIAED PEIAEIL AY AR+G+R+VHAADG RALELHLSLKPDLVLLD+QM Sbjct: 10 AGQGAQALVLIAEDEPEIAEILIAYFARNGLRTVHAADGRRALELHLSLKPDLVLLDVQM 69 Query: 89 PQVNGWQVLAQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAV 148 P V+GW+VLA+IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVAR +AV Sbjct: 70 PHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVARAQAV 129 Query: 149 LRRSLPREEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRR 208 LRRS+ +E++R+LRA PF ID E HE E++GV HTLVLTLTEFKLLAQLARAPRR Sbjct: 130 LRRSMAGARQEEQRVLRAAPFEIDLEHHEATVEVDGVRHTLVLTLTEFKLLAQLARAPRR 189 Query: 209 VFSRAELLATCLPEGDTLERTVDSHVSKLRKKLEDLGLAGIPVSIRGVGYRFQQG 263 VFSRAEL+ATCLPEGD LERTVDSHVSKLRKKL+DLG+AG+P S+RGVGY+ G Sbjct: 190 VFSRAELMATCLPEGDALERTVDSHVSKLRKKLDDLGVAGVPASVRGVGYKLWSG 244 >ref|YP_624897.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gb|ABF79924.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] Length = 259 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 182/250 (72%), Positives = 211/250 (84%), Gaps = 1/250 (0%) Query: 15 ENARMAATQVKAGEAA-PATGALILIAEDAPEIAEILAAYLARSGMRSVHAADGARALEL 73 E+ R+A + + A AL+LIAED PEIAEIL AY AR+G+R+VHAADG RALEL Sbjct: 9 ESERVAMPEFSSSPGAGQGAQALVLIAEDEPEIAEILTAYFARNGLRTVHAADGRRALEL 68 Query: 74 HLSLKPDLVLLDIQMPQVNGWQVLAQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVV 133 HLSLKPDLVLLD+QMP V+GW+VLA+IR R +TPVI+LTALDQD+DKLTGLRIGADDYVV Sbjct: 69 HLSLKPDLVLLDVQMPHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVV 128 Query: 134 KPFNPAEVVARVEAVLRRSLPREEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTL 193 KPFNPAEVVAR +AVLRRS+ +E++R+LRA PF ID E HE E++G HTLVLTL Sbjct: 129 KPFNPAEVVARAQAVLRRSMAGSRQEEQRVLRAAPFEIDLEHHEATVEVDGARHTLVLTL 188 Query: 194 TEFKLLAQLARAPRRVFSRAELLATCLPEGDTLERTVDSHVSKLRKKLEDLGLAGIPVSI 253 TEFKLLAQLARAPRRVFSRAEL+ATCLPEGD LERTVDSHVSKLRKKL+DLG+AG+P S+ Sbjct: 189 TEFKLLAQLARAPRRVFSRAELMATCLPEGDALERTVDSHVSKLRKKLDDLGVAGVPASV 248 Query: 254 RGVGYRFQQG 263 RGVGY+ G Sbjct: 249 RGVGYKLWSG 258 >ref|YP_001778003.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA93513.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 245 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 179/235 (76%), Positives = 204/235 (86%) Query: 29 AAPATGALILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQM 88 A AL+LIAED PEIAEIL AY AR+G+R+VHAADG RALELHLSLKPDLVLLD+QM Sbjct: 10 AGQGAQALVLIAEDEPEIAEILTAYFARNGLRTVHAADGRRALELHLSLKPDLVLLDVQM 69 Query: 89 PQVNGWQVLAQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAV 148 P V+GW+VLA+IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVAR +AV Sbjct: 70 PHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVARAQAV 129 Query: 149 LRRSLPREEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRR 208 LRRS+ +E++R+LRA PF ID E HE E++G HTLVLTLTEFKLLAQLARAPRR Sbjct: 130 LRRSMAGSRQEEQRVLRAAPFEIDLEHHEATVEVDGARHTLVLTLTEFKLLAQLARAPRR 189 Query: 209 VFSRAELLATCLPEGDTLERTVDSHVSKLRKKLEDLGLAGIPVSIRGVGYRFQQG 263 VFSRAEL+ATCLPEGD LERTVDSHVSKLRKKL+DLG+AG+P S+RGVGY+ G Sbjct: 190 VFSRAELMATCLPEGDALERTVDSHVSKLRKKLDDLGVAGVPASVRGVGYKLWSG 244