BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5114.p (485 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777335.1| amino acid permease family protein [Herbaspi... 743 0.0 ref|YP_002872669.1| putative amino acid permease [Pseudomonas fl... 575 e-162 ref|ZP_07774432.1| basic helix-loop-helix dimerization domain bH... 574 e-161 ref|YP_004354364.1| amino acid permease [Pseudomonas brassicacea... 571 e-160 ref|YP_004353621.1| amino acid transporter membrane protein [Pse... 563 e-158 >ref|YP_003777335.1| amino acid permease family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65427.1| amino acid permease family protein [Herbaspirillum seropedicae SmR1] Length = 485 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 451/485 (92%), Positives = 471/485 (97%) Query: 1 MSQLDCSKHDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGPGTPALL 60 MSQ+DC+ DKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNG GTPALL Sbjct: 1 MSQVDCTTQDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALL 60 Query: 61 VLILLLLLAFSVGYTTMARHVTNAGGFYAFSSAGLGGMAGGVAGVLAMFAYNILQIGLYG 120 VLILLLLLAFSVGYTTMARHVTNAGGFYAFSSAGLGG+AGGVAGVLAMFAYNILQIGLYG Sbjct: 61 VLILLLLLAFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYG 120 Query: 121 MFGGVMSATIFDIFGVQLAWWVYAALAMLSVAVLGYRNIDLSARLLSVVVVAEYLAVLVL 180 MFGGVMSAT DIFG+ LAWWVYAA+AMLSVA+LGYRNIDLSARLLSVVVVAEYLAVLVL Sbjct: 121 MFGGVMSATFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVL 180 Query: 181 DFCILRAGGDHGVNLDSFAPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIP 240 DFCILR+GGD GVNLDSF+PANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIP Sbjct: 181 DFCILRSGGDRGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIP 240 Query: 241 IATYTSVLLIGAFYGISLWALIIGAGSDKVVKLLEHMQDPTAFIYVMSDHYAGGGLTAVI 300 IATYTSVLLIG FYGISLW+LIIGAGSDKVVKLLE MQDPTAFIY+MSDHYAG GLTAVI Sbjct: 241 IATYTSVLLIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVI 300 Query: 301 RILFVISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHKTYQSPHMGSALQSAIAAVV 360 RILFVISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTH+TYQSPHMGSALQSAIAAVV Sbjct: 301 RILFVISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVV 360 Query: 361 VTLFAVSGAHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRHPQACDSAWRVRILPA 420 VTLFAV AHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRR P+AC+SAWRVRILPA Sbjct: 361 VTLFAVFDAHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACNSAWRVRILPA 420 Query: 421 VSLVALLYILCTAILHFDVLTGASKSMSWALCSMIPLAILIGVMLASRLRRCAPMRFAAL 480 VSL+ALLYIL TAILHFDVLTGAS+SMS+ALCSMIPLAI++GVMLA+RLRRCAP+RFAAL Sbjct: 421 VSLLALLYILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAAL 480 Query: 481 GSHKL 485 GSHKL Sbjct: 481 GSHKL 485 >ref|YP_002872669.1| putative amino acid permease [Pseudomonas fluorescens SBW25] emb|CAY49321.1| putative amino acid permease [Pseudomonas fluorescens SBW25] Length = 503 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 334/470 (71%), Positives = 405/470 (86%) Query: 16 LRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGPGTPALLVLILLLLLAFSVGYT 75 L++ ALGVGFIIFFV+SAASPLSVIAGGFPIGIMLGNG GTPALL+L LL+LLAFSVGYT Sbjct: 34 LKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLILALLVLLAFSVGYT 93 Query: 76 TMARHVTNAGGFYAFSSAGLGGMAGGVAGVLAMFAYNILQIGLYGMFGGVMSATIFDIFG 135 TM+RHVTNAGGFYAF+S GLGG+AGG AGVLAMFAYNILQ+GLYGMFGGV+S T+ FG Sbjct: 94 TMSRHVTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFGGVVSGTMEAAFG 153 Query: 136 VQLAWWVYAALAMLSVAVLGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRAGGDHGVNL 195 + L WW Y+ +AM S+A+LGYR IDLSAR+LSVVV+AEYLA+LVLDF IL++GGD G+NL Sbjct: 154 LVLPWWSYSLMAMASIAILGYRKIDLSARVLSVVVIAEYLAILVLDFAILKSGGDSGINL 213 Query: 196 DSFAPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLIGAFYG 255 DSF+ ++V SGTPSIGLLF FAAFIGFEATTIYGEEAKNPKR+IPIATY SVLLIG FY Sbjct: 214 DSFSSSHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKNPKRSIPIATYCSVLLIGGFYA 273 Query: 256 ISLWALIIGAGSDKVVKLLEHMQDPTAFIYVMSDHYAGGGLTAVIRILFVISIYAGLLAF 315 +S+W++++G G+DK+V LL+ +QDPT FIY MSDH+ G LT +IR+LF++SIYAGLLAF Sbjct: 274 LSVWSMVVGVGADKIVPLLQSLQDPTTFIYGMSDHFVGPQLTQIIRVLFMVSIYAGLLAF 333 Query: 316 HSSAARYFYAVGRDGLLHRLLGTTHKTYQSPHMGSALQSAIAAVVVTLFAVSGAHPILHL 375 H++AARYFYA+GRDGLLH LLGTTH+ +QSPHMGSALQS IAAVVV +FA A PIL L Sbjct: 334 HNAAARYFYAIGRDGLLHSLLGTTHRVHQSPHMGSALQSLIAAVVVLIFAAMDADPILQL 393 Query: 376 FAWFSSLAALCLMLLMIMTSAAVICYFRRHPQACDSAWRVRILPAVSLVALLYILCTAIL 435 FAW S+LA LC++LLM +TS AV YF RHP+ R RILP +S +AL+ +L A++ Sbjct: 394 FAWLSNLATLCVILLMALTSVAVCAYFHRHPELKVGMLRGRILPGISCLALVMVLVLAVV 453 Query: 436 HFDVLTGASKSMSWALCSMIPLAILIGVMLASRLRRCAPMRFAALGSHKL 485 HFDVLTGAS+ +S++LC++IP A++IG++LA+RLR+ +P RF ALGSHKL Sbjct: 454 HFDVLTGASQLLSYSLCAIIPAALIIGIVLAARLRKSSPQRFLALGSHKL 503 >ref|ZP_07774432.1| basic helix-loop-helix dimerization domain bHLH:DNA topoisomerase II:amino acid/polyamine transpor [Pseudomonas fluorescens WH6] gb|EFQ64430.1| basic helix-loop-helix dimerization domain bHLH:DNA topoisomerase II:amino acid/polyamine transpor [Pseudomonas fluorescens WH6] Length = 478 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 336/470 (71%), Positives = 398/470 (84%) Query: 16 LRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGPGTPALLVLILLLLLAFSVGYT 75 L++ ALGVGFIIFFV+SAASPLSVIAGGFPIGIMLGNG GTPALL+L L +L+AFSVGYT Sbjct: 9 LKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLLLALAVLMAFSVGYT 68 Query: 76 TMARHVTNAGGFYAFSSAGLGGMAGGVAGVLAMFAYNILQIGLYGMFGGVMSATIFDIFG 135 TMARHVTNAGGFYAF+S GLGG+AGG A VLAMFAYNILQI LYGMFGGV+S T+ +FG Sbjct: 69 TMARHVTNAGGFYAFTSRGLGGLAGGSAAVLAMFAYNILQIALYGMFGGVVSGTMESVFG 128 Query: 136 VQLAWWVYAALAMLSVAVLGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRAGGDHGVNL 195 + L WW Y+ LAM S+A+LGYR IDLSAR+LSVVV+AEYLA+L LDF IL+ GGD GVNL Sbjct: 129 LVLPWWSYSLLAMASIAILGYRKIDLSARVLSVVVIAEYLAILTLDFAILKTGGDSGVNL 188 Query: 196 DSFAPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLIGAFYG 255 DSF+ +V SGTPSIGLLF FAAFIGFEATTIYGEEAK+P+R IPIATY+SVLLIG FY Sbjct: 189 DSFSSQHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKDPQRTIPIATYSSVLLIGGFYA 248 Query: 256 ISLWALIIGAGSDKVVKLLEHMQDPTAFIYVMSDHYAGGGLTAVIRILFVISIYAGLLAF 315 +S+WA+++G G+DK+V +L+ +QDPT FIY MSDH+ G LT +IR+LF++SIYAGLLAF Sbjct: 249 LSVWAMVVGVGADKIVPMLQALQDPTTFIYGMSDHFVGPHLTQIIRVLFMVSIYAGLLAF 308 Query: 316 HSSAARYFYAVGRDGLLHRLLGTTHKTYQSPHMGSALQSAIAAVVVTLFAVSGAHPILHL 375 H++AARYFYA+GRDGLLH LLGTTH+ +QSPHMGSALQS IAAVVV +FA A PIL L Sbjct: 309 HNAAARYFYAIGRDGLLHSLLGTTHRVHQSPHMGSALQSLIAAVVVLIFAAMDADPILQL 368 Query: 376 FAWFSSLAALCLMLLMIMTSAAVICYFRRHPQACDSAWRVRILPAVSLVALLYILCTAIL 435 FAWFS+LA LC++LLM MTS AV YF RHP+ WR RILP S +ALL +L A++ Sbjct: 369 FAWFSNLATLCVILLMAMTSVAVCVYFHRHPELKVGLWRGRILPIFSCLALLMVLVLAVV 428 Query: 436 HFDVLTGASKSMSWALCSMIPLAILIGVMLASRLRRCAPMRFAALGSHKL 485 HFDVLTGAS+ +S+ LC++IP A+L GV LA+RLR+ +P RF ALGSHKL Sbjct: 429 HFDVLTGASQLLSYGLCAVIPAALLAGVYLAARLRKVSPQRFLALGSHKL 478 >ref|YP_004354364.1| amino acid permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69360.1| putative amino acid permease, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 482 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 334/470 (71%), Positives = 397/470 (84%) Query: 16 LRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGPGTPALLVLILLLLLAFSVGYT 75 L++ ALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNG GTPALL+L LL+LLAFSVGYT Sbjct: 13 LKRGALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLILALLVLLAFSVGYT 72 Query: 76 TMARHVTNAGGFYAFSSAGLGGMAGGVAGVLAMFAYNILQIGLYGMFGGVMSATIFDIFG 135 TM+RHVTNAGGFYAF+S GLGG+AGG AGVLAMFAYNILQ+GLYGMFGGV+S T+ +FG Sbjct: 73 TMSRHVTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFGGVVSGTMESVFG 132 Query: 136 VQLAWWVYAALAMLSVAVLGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRAGGDHGVNL 195 + L WW Y+ +AM SVA+LGYR IDLSAR+LSV+V+AEYLA+L+LDF ILR GGD G+NL Sbjct: 133 LVLPWWSYSLMAMASVAILGYRKIDLSARVLSVIVIAEYLAILLLDFAILRTGGDSGINL 192 Query: 196 DSFAPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLIGAFYG 255 D+FA +V SGTPSIGLLF FAAFIGFEATTIYGEEAKNP+R IPIATY SVLLIG FY Sbjct: 193 DAFAGRHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKNPQRTIPIATYCSVLLIGGFYA 252 Query: 256 ISLWALIIGAGSDKVVKLLEHMQDPTAFIYVMSDHYAGGGLTAVIRILFVISIYAGLLAF 315 +S+W+++IG G+DK+V L+ +QDPT FIY MSDH+ G LT VIR+LF++SIYAGLLAF Sbjct: 253 LSVWSMVIGVGADKIVSTLQALQDPTTFIYGMSDHFVGPHLTQVIRVLFMVSIYAGLLAF 312 Query: 316 HSSAARYFYAVGRDGLLHRLLGTTHKTYQSPHMGSALQSAIAAVVVTLFAVSGAHPILHL 375 H++AARYFYA+GRDGLL LGTTH+ +QSPHMGSALQS I+AVVV +FA A PIL L Sbjct: 313 HNAAARYFYAIGRDGLLPSRLGTTHRVHQSPHMGSALQSLISAVVVLIFAAMDADPILQL 372 Query: 376 FAWFSSLAALCLMLLMIMTSAAVICYFRRHPQACDSAWRVRILPAVSLVALLYILCTAIL 435 FAW S+LA LC++LLM +TSAAV + RRHP+ WR RI P S +ALL +L A++ Sbjct: 373 FAWLSNLATLCVILLMALTSAAVWAFARRHPELKLGIWRGRIFPGFSCIALLTVLFIAVV 432 Query: 436 HFDVLTGASKSMSWALCSMIPLAILIGVMLASRLRRCAPMRFAALGSHKL 485 HFDVLTGASK++S+ LC++IP A+L GV LA+RLR+ AP R+ LGSHKL Sbjct: 433 HFDVLTGASKTLSYGLCAIIPAALLAGVFLAARLRKVAPQRYRVLGSHKL 482 >ref|YP_004353621.1| amino acid transporter membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68617.1| putative amino acid transporter, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 482 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 332/470 (70%), Positives = 397/470 (84%) Query: 16 LRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGPGTPALLVLILLLLLAFSVGYT 75 L++ ALGVGFIIFFV+SAASPLSVIAGGFPIGIMLGNG GTPALL+L LL+LLAFS GYT Sbjct: 13 LKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLLLALLVLLAFSAGYT 72 Query: 76 TMARHVTNAGGFYAFSSAGLGGMAGGVAGVLAMFAYNILQIGLYGMFGGVMSATIFDIFG 135 M+RH+TNAGGFYAF+S GLGG+AGG AGVLAMFAYNILQ+GLYGMFGGV+S T+ +FG Sbjct: 73 AMSRHMTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFGGVVSGTMASVFG 132 Query: 136 VQLAWWVYAALAMLSVAVLGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRAGGDHGVNL 195 + L WW Y+ LAM S+A+LGYR IDLSAR+LSVVV+AEYLA+L LDF IL+ GGD G+NL Sbjct: 133 LDLPWWTYSLLAMASIAILGYRKIDLSARVLSVVVIAEYLAILTLDFAILKTGGDSGINL 192 Query: 196 DSFAPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLIGAFYG 255 DSF ++V SGTPSIGLLF FAAFIGFEATTIYGEEA+NP R IPIATY+SVLLIG FY Sbjct: 193 DSFDRSHVFSGTPSIGLLFCFAAFIGFEATTIYGEEARNPHRTIPIATYSSVLLIGGFYA 252 Query: 256 ISLWALIIGAGSDKVVKLLEHMQDPTAFIYVMSDHYAGGGLTAVIRILFVISIYAGLLAF 315 +S+WA++IG G+DK+V L+ +QDPT FIY MSDH+ G LT +IR+LF++SIYAGLLAF Sbjct: 253 LSVWAMVIGVGADKIVPTLQALQDPTTFIYGMSDHFVGPHLTQIIRVLFMVSIYAGLLAF 312 Query: 316 HSSAARYFYAVGRDGLLHRLLGTTHKTYQSPHMGSALQSAIAAVVVTLFAVSGAHPILHL 375 H++AARYFYA+GRDGLLH LGTTH+ +QSPHMGS LQS IAAVVV +FA A PIL L Sbjct: 313 HNAAARYFYAIGRDGLLHSRLGTTHRVHQSPHMGSVLQSLIAAVVVLIFAALDADPILQL 372 Query: 376 FAWFSSLAALCLMLLMIMTSAAVICYFRRHPQACDSAWRVRILPAVSLVALLYILCTAIL 435 FAWFS+LA LC++LLM +TSAAV YFR HP+ WR RILP S +ALL +L A++ Sbjct: 373 FAWFSNLATLCVILLMALTSAAVFVYFRAHPELKLGLWRGRILPVFSCLALLAVLALAVI 432 Query: 436 HFDVLTGASKSMSWALCSMIPLAILIGVMLASRLRRCAPMRFAALGSHKL 485 HFDVLTGAS+ +S+ LC++IP A+++GV LA+RLR+ +P RF ALGSHKL Sbjct: 433 HFDVLTGASQLLSYGLCAVIPAALIVGVFLAARLRKVSPERFMALGSHKL 482