BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5111.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777332.1| AraC family transcription regulator protein ... 561 e-158 ref|YP_003774702.1| AraC family transcription regulator protein ... 412 e-113 ref|YP_004234207.1| AraC family transcriptional regulator [Acido... 371 e-101 ref|YP_004354366.1| AraC family transcriptional regulator [Pseud... 351 1e-94 ref|YP_002872673.1| AraC family regulatory protein [Pseudomonas ... 348 8e-94 >ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65424.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 305/328 (92%), Positives = 312/328 (95%), Gaps = 3/328 (0%) Query: 19 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 78 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG Sbjct: 1 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 60 Query: 79 EAPKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 138 EAP+DQICFAFPIAAPGAAHVQGREAD+KSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF Sbjct: 61 EAPRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 120 Query: 139 EEHLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQAN---AQ 195 EEHLHQMPDPDRI+ALL+QPVIKVPPKGLRACRERLL LFS +MLQ D G QA+ Q Sbjct: 121 EEHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQ 180 Query: 196 AEQREQALESSLLGELLGLLSAPDSDPVRQMSTTRSYIVEKLHRQAIVDAANVPSIFEVC 255 QREQALESSLLGELLGLL APD DPVRQMSTTRSYIVEKLHRQ IVDAANVPSIFEVC Sbjct: 181 TLQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVC 240 Query: 256 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDVASRWGFFHL 315 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGD+ASRWGFFHL Sbjct: 241 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDIASRWGFFHL 300 Query: 316 SHFAEDYQELFGELPSQTARRVPQKIFQ 343 SHFAEDYQ LFGELPSQTARRVPQKIFQ Sbjct: 301 SHFAEDYQALFGELPSQTARRVPQKIFQ 328 >ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62794.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 221/318 (69%), Positives = 257/318 (80%), Gaps = 4/318 (1%) Query: 19 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 78 MLQS+ RFQDVH HAAAI W YAQISAGK+ESSL+QLST RCH FRERIN+RVVQ G Sbjct: 1 MLQSVLRFQDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQG 60 Query: 79 EAPKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 138 EAP++Q+CFAFP+AAPG AHVQGRE DE +LFLQGG+EFM H+P+DTDL ++TFDR LF Sbjct: 61 EAPREQVCFAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALF 120 Query: 139 EEHLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQANAQAEQ 198 E L P+RI AL++QPV+KV + L ACRERLLN+F +ML I+ G + Q Q Sbjct: 121 EAQLEHTASPERIVALMKQPVVKVASQDLHACRERLLNIFYWAMLSIEDG----HGQHPQ 176 Query: 199 REQALESSLLGELLGLLSAPDSDPVRQMSTTRSYIVEKLHRQAIVDAANVPSIFEVCQRL 258 EQ LE SLL ELL LLSAPD RQ+ST RSYIV+KLHRQ + DA NVPSIFEVC+++ Sbjct: 177 HEQELELSLLAELLALLSAPDCGASRQISTIRSYIVDKLHRQTMNDAINVPSIFEVCEQM 236 Query: 259 QVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDVASRWGFFHLSHF 318 QVSRRTVQNSFQTV ETTP NYLRCVRLNGVRR L+ST+ ++ +IGD+ASRWGFFHLSHF Sbjct: 237 QVSRRTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAEQITIGDIASRWGFFHLSHF 296 Query: 319 AEDYQELFGELPSQTARR 336 AEDY+ LF ELPSQT RR Sbjct: 297 AEDYRALFCELPSQTIRR 314 >ref|YP_004234207.1| AraC family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45640.1| transcriptional regulator, AraC family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 322 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 198/318 (62%), Positives = 240/318 (75%), Gaps = 5/318 (1%) Query: 19 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 78 M QSI RFQD+HVHA+A+ W QTY+QI+AG LESSL+QL++ RCH FRE IN+RVVQHG Sbjct: 1 MNQSIDRFQDIHVHASAVREWHQTYSQITAGALESSLIQLNSARCHVFREHINQRVVQHG 60 Query: 79 EAPKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 138 EAP+ ++CFA PIA PG+ +QGREAD+KSI L+GGEEFMFHMPM DLL++TF++ F Sbjct: 61 EAPRGKLCFAVPIAIPGSIRMQGREADDKSIFVLRGGEEFMFHMPMGMDLLAITFEQSFF 120 Query: 139 EEHLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQANAQAEQ 198 ++ L P I LLRQPVIKVP + L R RLL +FS++M D G Q E Sbjct: 121 DQALADTPWEREIGMLLRQPVIKVPQQRLEEARRRLLAIFSRAMASGDAG---VPLQGEP 177 Query: 199 REQALESSLLGELLGLLSAPDSDPV-RQMSTTRSYIVEKLHRQAIVDAANVPSIFEVCQR 257 QALE ++L E+L L++ P D R S+T S+IVEK HR A+ DA NVPS+ ++C+R Sbjct: 178 -PQALEQAMLDEMLRLVTDPACDRAQRHGSSTHSFIVEKCHRLAMSDAVNVPSVMDLCER 236 Query: 258 LQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDVASRWGFFHLSH 317 L VSRRTVQNSF+TVAETTPLNYLR VRLNGVRR+L+ST E SIGD AS WGFFHLSH Sbjct: 237 LHVSRRTVQNSFRTVAETTPLNYLRSVRLNGVRRKLMSTAASELSIGDAASAWGFFHLSH 296 Query: 318 FAEDYQELFGELPSQTAR 335 FA +YQELFGELPSQT R Sbjct: 297 FAAEYQELFGELPSQTRR 314 >ref|YP_004354366.1| AraC family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69362.1| putative Transcription factor, AraC family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 322 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 185/318 (58%), Positives = 233/318 (73%), Gaps = 11/318 (3%) Query: 21 QSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEA 80 Q+I F+D+HVHAA + W Q Y Q++AG ESSL+QL+T RCH FRE+IN+RVVQHG A Sbjct: 4 QNISHFRDIHVHAATVQEWNQDYNQLTAGTAESSLIQLTTGRCHVFREQINQRVVQHGVA 63 Query: 81 PKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEE 140 P+ ++CFA PI PG+ +QGRE DE S+ FL GGEEFMFHMPM +LL++TF+R+LFE+ Sbjct: 64 PRGKMCFAVPITVPGSIRMQGREVDESSLFFLHGGEEFMFHMPMGMELLAITFERELFEQ 123 Query: 141 HLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSML--QIDGGQWQANAQAEQ 198 L Q IS LLRQPVI++PP+ R R+L FSQ++ ++D GQ Sbjct: 124 ALAQTASAKEISQLLRQPVIRLPPQRYADARRRMLAAFSQALSNEELDNGQ--------D 175 Query: 199 REQALESSLLGELLGLLSAPDSDP-VRQMSTTRSYIVEKLHRQAIVDAANVPSIFEVCQR 257 RE A E ++L ELL L++ P D R S+TRS+IVEK HR A + NVPS+ E+CQR Sbjct: 176 RELAFEQAMLDELLQLMTDPACDKQQRSPSSTRSFIVEKCHRLATAELNNVPSVDELCQR 235 Query: 258 LQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDVASRWGFFHLSH 317 LQVSRRTVQNSF++VAETTP+NYLR VRLNGVRR L++T SIGD A++WGF+HLSH Sbjct: 236 LQVSRRTVQNSFRSVAETTPINYLRSVRLNGVRRTLMTTQASRLSIGDAAAQWGFYHLSH 295 Query: 318 FAEDYQELFGELPSQTAR 335 FA +YQELF ELPSQTAR Sbjct: 296 FAAEYQELFAELPSQTAR 313 >ref|YP_002872673.1| AraC family regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY49325.1| AraC family regulatory protein [Pseudomonas fluorescens SBW25] Length = 322 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 183/316 (57%), Positives = 232/316 (73%), Gaps = 7/316 (2%) Query: 21 QSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEA 80 Q+I F+DVHVHAA I W Q Y+Q++AG ESSLMQL+T CH F E+IN+RVVQ+G A Sbjct: 4 QTISHFRDVHVHAATIQQWNQDYSQLTAGCAESSLMQLTTTGCHLFLEQINQRVVQNGVA 63 Query: 81 PKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEE 140 P+ ++CFA PI PG+ +QGRE D+ S+ FL GGEEFMFHMPM +LLS+TF+R+LFE+ Sbjct: 64 PRGKMCFAVPINVPGSIRMQGREVDDSSLFFLHGGEEFMFHMPMGMELLSITFERELFEQ 123 Query: 141 HLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQANAQAEQRE 200 L Q ++ LLRQPVI+V P+ R+RLL LFSQ+++ ++ RE Sbjct: 124 ALEQTASAKELNRLLRQPVIRVSPQRFARARQRLLALFSQALM------YEDLDSTPDRE 177 Query: 201 QALESSLLGELLGLLSAPDSDP-VRQMSTTRSYIVEKLHRQAIVDAANVPSIFEVCQRLQ 259 ALE ++LGELL L++ P D R S+TRS+IVEK HR + NVPS+ E+C+RLQ Sbjct: 178 VALEQAMLGELLQLMTDPACDKHQRSPSSTRSFIVEKCHRLTTAEMINVPSVIELCERLQ 237 Query: 260 VSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDVASRWGFFHLSHFA 319 VSRRT+QNSF++VAETTPLNYLR VRLNGVRR L+ST E SIGD A++WGF+HLSHFA Sbjct: 238 VSRRTLQNSFRSVAETTPLNYLRSVRLNGVRRLLMSTRACELSIGDAAAQWGFYHLSHFA 297 Query: 320 EDYQELFGELPSQTAR 335 +YQELF ELPS TAR Sbjct: 298 AEYQELFAELPSHTAR 313