BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5110.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777331.1| transcription regulator protein [Herbaspiril... 472 e-131 ref|YP_004234211.1| IclR family transcriptional regulator [Acido... 312 3e-83 ref|YP_004354365.1| IclR family transcriptional regulator [Pseud... 292 3e-77 ref|YP_003979080.1| transcriptional regulator family protein 18 ... 266 2e-69 ref|YP_004353625.1| IclR family transcriptional regulator [Pseud... 177 1e-42 >ref|YP_003777331.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65423.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 234/244 (95%), Positives = 242/244 (99%) Query: 1 MNSLSRMLEVLTLFKPSQPVIDIDIICAQLGYTPASAYRYVRELGHAGLLVKMPRGYAVG 60 MNSLSRMLEVLTLFKPSQPVIDI++ICAQLGYTPASAYRYVRELG+AGLLVKMPRGYAVG Sbjct: 1 MNSLSRMLEVLTLFKPSQPVIDIELICAQLGYTPASAYRYVRELGNAGLLVKMPRGYAVG 60 Query: 61 PKVIELDRHMTQFDPLLAASRDIVGDLVAQTGLELLISELYGSTVINILQESGNNDARLN 120 PKVIELDRHMTQFDPLL+ASRDIVGDLVAQTGLELLISELYGSTVI ILQESG+NDARLN Sbjct: 61 PKVIELDRHMTQFDPLLSASRDIVGDLVAQTGLELLISELYGSTVITILQESGSNDARLN 120 Query: 121 YGRGTPMDLFHSATARVILAYLLPRQLRKHFDGATAEELRLVGSNWKDFSKVMLKIRKDG 180 +GRGTPMDLFHSATARVILAYLLPRQLRKHFDGA+AEELRLVGSNW+DFSKVMLKIRKDG Sbjct: 121 FGRGTPMDLFHSATARVILAYLLPRQLRKHFDGASAEELRLVGSNWRDFSKVMLKIRKDG 180 Query: 181 YCVSEGELDPGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITA 240 YCVSEGELD GKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITA Sbjct: 181 YCVSEGELDAGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITA 240 Query: 241 RIAG 244 RIAG Sbjct: 241 RIAG 244 >ref|YP_004234211.1| IclR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45644.1| transcriptional regulator, IclR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 246 Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 152/244 (62%), Positives = 188/244 (77%), Gaps = 1/244 (0%) Query: 1 MNSLSRMLEVLTLFKPSQPVIDIDIICAQLGYTPASAYRYVRELGHAGLLVKMPRGYAVG 60 MNSL RML VL LF+P QPVID+D IC +L YTPASAYRY+RELG GLLV++PRGYA+G Sbjct: 1 MNSLRRMLAVLDLFRPEQPVIDVDTICRELDYTPASAYRYLRELGDVGLLVRLPRGYALG 60 Query: 61 PKVIELDRHMTQFDPLLAASRDIVGDLVAQTGLELLISELYGSTVINILQESGNNDARLN 120 P++I L+R MT +DP+L SRD++ LV +T L+ LISELYG VIN+L + G++ A + Sbjct: 61 PRIIALERQMTDYDPMLVRSRDLIDRLVKETQLDALISELYGDVVINVLLQRGSDAAPAD 120 Query: 121 YGRGTPMDLFHSATARVILAYLLPRQLRKHFDG-ATAEELRLVGSNWKDFSKVMLKIRKD 179 GRG P+DLFHSATARV+LAYL PRQ+R+ +D A EL VG WKDFSK +L IRK Sbjct: 121 SGRGKPIDLFHSATARVVLAYLSPRQIRRIYDAHAAGPELEHVGLQWKDFSKSLLAIRKQ 180 Query: 180 GYCVSEGELDPGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKIT 239 GYC+SEGEL P + GIAAP+FDEKQR+LGSITL G +ER AF FL L+T+AA ++T Sbjct: 181 GYCISEGELHPERIGIAAPVFDEKQRVLGSITLVGRSERFKAFQEGFLCKLVTEAAAELT 240 Query: 240 ARIA 243 RIA Sbjct: 241 ERIA 244 >ref|YP_004354365.1| IclR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69361.1| putative Transcription factor, IclR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 246 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 139/244 (56%), Positives = 185/244 (75%), Gaps = 1/244 (0%) Query: 1 MNSLSRMLEVLTLFKPSQPVIDIDIICAQLGYTPASAYRYVRELGHAGLLVKMPRGYAVG 60 MNSL R+L V LF+P QPVID+DIIC +LGYTPA+AYRY+RELG AG L ++PRGYA+G Sbjct: 1 MNSLRRLLRVFDLFRPEQPVIDVDIICQELGYTPATAYRYLRELGDAGFLKRLPRGYALG 60 Query: 61 PKVIELDRHMTQFDPLLAASRDIVGDLVAQTGLELLISELYGSTVINILQESGNNDARLN 120 P+++ L+ M +DPLLA SRD+V LV TGL+ L+SE +G +V+N+L + G++ + Sbjct: 61 PRIVTLEHQMANYDPLLACSRDLVDRLVDDTGLDALVSEWHGDSVVNVLIQRGSDVGPVG 120 Query: 121 YGRGTPMDLFHSATARVILAYLLPRQLRKHFDG-ATAEELRLVGSNWKDFSKVMLKIRKD 179 RG P+DLFHSAT+RV+LAYLLPRQ+R+ +D A L +G WK F+K +L IRK Sbjct: 121 GDRGRPIDLFHSATSRVVLAYLLPRQIRRIYDAHAIPSGLLHLGLAWKPFTKSLLAIRKQ 180 Query: 180 GYCVSEGELDPGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKIT 239 GYC+SE EL PG++G+AAPIFDEK+R+LGS+TL G +ER AF +L L+T AA ++T Sbjct: 181 GYCISESELHPGRSGVAAPIFDEKRRVLGSMTLVGRSERFRAFQPGYLCDLVTGAASELT 240 Query: 240 ARIA 243 ARIA Sbjct: 241 ARIA 244 >ref|YP_003979080.1| transcriptional regulator family protein 18 [Achromobacter xylosoxidans A8] gb|ADP16365.1| bacterial transcriptional regulator family protein 18 [Achromobacter xylosoxidans A8] Length = 248 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 132/238 (55%), Positives = 175/238 (73%), Gaps = 1/238 (0%) Query: 7 MLEVLTLFKPSQPVIDIDIICAQLGYTPASAYRYVRELGHAGLLVKMPRGYAVGPKVIEL 66 ML+VL LF+P +PV+D+D IC GY PA+AYRYVREL GLLV++P GYA+GP++I L Sbjct: 1 MLDVLDLFQPDRPVLDVDAICQLRGYAPATAYRYVRELCACGLLVRLPAGYALGPRIIAL 60 Query: 67 DRHMTQFDPLLAASRDIVGDLVAQTGLELLISELYGSTVINILQESGNNDARLNYGRGTP 126 D M ++DP+L SRD++ +L +QTGL++L+S Y VIN+ Q+ G N LN+GRG Sbjct: 61 DLQMREYDPMLTVSRDLIEELSSQTGLDVLLSARYDDKVINVHQQPGRNTQALNFGRGRF 120 Query: 127 MDLFHSATARVILAYLLPRQLRKHFD-GATAEELRLVGSNWKDFSKVMLKIRKDGYCVSE 185 M L SATARVILA L PRQLR+ +D A + +++ +G +WK FS+ ML++RK GYCVS Sbjct: 121 MPLLRSATARVILANLGPRQLRRVYDEHAQSPDMQRLGPDWKAFSRAMLQVRKAGYCVSS 180 Query: 186 GELDPGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITARIA 243 GELD GKTGIAAPIFDE+ +LGSIT+ G + AF ++L+GLI AA +IT RIA Sbjct: 181 GELDSGKTGIAAPIFDEENHVLGSITIIGAQDAFAAFREDYLAGLILRAAAEITRRIA 238 >ref|YP_004353625.1| IclR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68621.1| putative transcription factor, IclR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 250 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 96/244 (39%), Positives = 148/244 (60%), Gaps = 3/244 (1%) Query: 1 MNSLSRMLEVLTLFKPSQPVIDIDIICAQLGYTPASAYRYVRELGHAGLLVKMPRG-YAV 59 M+SLS+ML VL LF P+ ID D I ++G + A+ YRYV++L AGLLV++ G Y + Sbjct: 1 MSSLSKMLSVLDLFDPATLKIDPDTIAERMGLSRATVYRYVKDLCDAGLLVRVDAGSYGL 60 Query: 60 GPKVIELDRHMTQFDPLLAASRDIVGDLVAQTGLELLISELYGSTVINILQESGNNDARL 119 GP++IELD M Q+DP+L A R+++ L TGL + S Y +IN N+ + Sbjct: 61 GPRIIELDWMMRQYDPILVAGRELMHQLSEATGLAVFASVFYDGHIINTYIAEPNDTYQF 120 Query: 120 NYGRGTPMDLFHSATARVILAYLLPRQLRKHFDGATAEELRLVGSNWKDFSKVMLKIRKD 179 +GRG P+ F A ++V++A+ R+L++ F+ A + G +W FSKV KIRKD Sbjct: 121 AFGRGQPLPFFRGAQSKVLIAFQKGRRLQRLFEEHMANDPD-NGYDWASFSKVAKKIRKD 179 Query: 180 GYCVSEGELDPGKTGIAAPIFDEK-QRILGSITLAGNTERVNAFNREFLSGLITDAARKI 238 GYC++ EL+ G TGIAAPI + ++GS++ G+T+ +E + ++ D R+I Sbjct: 180 GYCMTHDELNLGLTGIAAPIINPGLDEVVGSLSAVGSTDSFKLLRQETVIEMVMDTTRRI 239 Query: 239 TARI 242 R+ Sbjct: 240 AERM 243