BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5106.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777328.1| hypothetical protein Hsero_3949 [Herbaspiril... 673 0.0 ref|NP_883006.1| hypothetical protein BPP0665 [Bordetella parape... 550 e-154 ref|NP_887222.1| hypothetical protein BB0672 [Bordetella bronchi... 549 e-154 ref|YP_003979083.1| BNR/Asp-box repeat family protein [Achromoba... 473 e-131 ref|YP_004234192.1| hypothetical protein Acav_1707 [Acidovorax a... 446 e-123 >ref|YP_003777328.1| hypothetical protein Hsero_3949 [Herbaspirillum seropedicae SmR1] gb|ADJ65420.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 340/345 (98%), Positives = 344/345 (99%) Query: 1 MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAIDPSDPSRVLAGADAGI 60 MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLA+DPSDP+RVLAGADAGI Sbjct: 1 MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAVDPSDPARVLAGADAGI 60 Query: 61 CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 120 CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL Sbjct: 61 CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 120 Query: 121 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN 180 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN Sbjct: 121 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN 180 Query: 181 SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP 240 SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP Sbjct: 181 SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP 240 Query: 241 QGNQLLLAIGDGTPGTRTRIYRSEDRGQSWQPSVLHTAPNSTVWAFGGHPSDPQLLFAGT 300 +GNQLLLAIGDGTPGTRTRIYRSEDRGQ+WQ SVLHTAPNSTVWAFGGHPSDPQLLFAGT Sbjct: 241 EGNQLLLAIGDGTPGTRTRIYRSEDRGQNWQASVLHTAPNSTVWAFGGHPSDPQLLFAGT 300 Query: 301 KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSID 345 KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSID Sbjct: 301 KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSID 345 >ref|NP_883006.1| hypothetical protein BPP0665 [Bordetella parapertussis 12822] emb|CAE40074.1| conserved hypothetical protein [Bordetella parapertussis] Length = 344 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 269/344 (78%), Positives = 303/344 (88%) Query: 1 MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAIDPSDPSRVLAGADAGI 60 MQGTILVGTAGQGI+RS DNGA+WHRLGLKEAIEFDG VRSLA+DP++P+RVLAGADAGI Sbjct: 1 MQGTILVGTAGQGILRSNDNGASWHRLGLKEAIEFDGTVRSLAVDPANPARVLAGADAGI 60 Query: 61 CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 120 CLSTDGGAHF + SPA+ QT+WS+AFSP +P+LVFAG+GAPSRARMYRSRDGG SW+QL Sbjct: 61 CLSTDGGAHFSLVDSPANGQTIWSVAFSPRDPRLVFAGSGAPSRARMYRSRDGGQSWEQL 120 Query: 121 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN 180 ELPEFCSGVH+PRILT+ + +EVWFGVEEGGAWRS D GDTW RID PGRGINN Sbjct: 121 SPELPEFCSGVHRPRILTVCAHPEQAEEVWFGVEEGGAWRSTDAGDTWERIDAPGRGINN 180 Query: 181 SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP 240 SDIH+IT+LPA + P +VVTVNSVC+S D+A SF +AS+ERFDG+YYTR + LD Sbjct: 181 SDIHSITLLPAASGQPATQIVVTVNSVCQSVDEARSFDCQASRERFDGLYYTRAVYPLDA 240 Query: 241 QGNQLLLAIGDGTPGTRTRIYRSEDRGQSWQPSVLHTAPNSTVWAFGGHPSDPQLLFAGT 300 G LLLA+GDGTPGTRTRIYRSEDRG+SW P++LHTAPNSTVWAFG HPSDP L+FAGT Sbjct: 241 AGQTLLLAVGDGTPGTRTRIYRSEDRGRSWAPALLHTAPNSTVWAFGAHPSDPALVFAGT 300 Query: 301 KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSI 344 KYG+LLRSTDGGRSWYKEWRDFSEITSVAWTP VAPVHAHPQSI Sbjct: 301 KYGHLLRSTDGGRSWYKEWRDFSEITSVAWTPHVAPVHAHPQSI 344 >ref|NP_887222.1| hypothetical protein BB0672 [Bordetella bronchiseptica RB50] emb|CAE31172.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 344 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 269/344 (78%), Positives = 303/344 (88%) Query: 1 MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAIDPSDPSRVLAGADAGI 60 MQGTILVGTAGQGI+RS DNGA+WHRLGLKEAIEFDG VRSLA+DP++P+RVLAGADAGI Sbjct: 1 MQGTILVGTAGQGILRSNDNGASWHRLGLKEAIEFDGTVRSLAVDPANPARVLAGADAGI 60 Query: 61 CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 120 CLSTDGGAHF + SPA+ QT+WS+AFSP +P+LVFAG+GAPSRARMYRSRDGG SW+QL Sbjct: 61 CLSTDGGAHFSLVDSPANGQTIWSVAFSPRDPRLVFAGSGAPSRARMYRSRDGGQSWEQL 120 Query: 121 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN 180 ELPEFCSGVH+PRILT+ + +EVWFGVEEGGAWRS D GDTW RID PGRGINN Sbjct: 121 SPELPEFCSGVHRPRILTVCAHPERAEEVWFGVEEGGAWRSTDAGDTWERIDAPGRGINN 180 Query: 181 SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP 240 SDIH+IT+LPA + P +VVTVNSVC+S D+A SF +AS+ERFDG+YYTR + LD Sbjct: 181 SDIHSITLLPAASGQPATQIVVTVNSVCQSVDEARSFDCQASRERFDGLYYTRAVYPLDA 240 Query: 241 QGNQLLLAIGDGTPGTRTRIYRSEDRGQSWQPSVLHTAPNSTVWAFGGHPSDPQLLFAGT 300 G LLLA+GDGTPGTRTRIYRSEDRG+SW P++LHTAPNSTVWAFG HPSDP L+FAGT Sbjct: 241 AGQTLLLAVGDGTPGTRTRIYRSEDRGRSWAPALLHTAPNSTVWAFGAHPSDPALVFAGT 300 Query: 301 KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSI 344 KYG+LLRSTDGGRSWYKEWRDFSEITSVAWTP VAPVHAHPQSI Sbjct: 301 KYGHLLRSTDGGRSWYKEWRDFSEITSVAWTPHVAPVHAHPQSI 344 >ref|YP_003979083.1| BNR/Asp-box repeat family protein [Achromobacter xylosoxidans A8] gb|ADP16368.1| BNR/Asp-box repeat family protein [Achromobacter xylosoxidans A8] Length = 346 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 241/347 (69%), Positives = 281/347 (80%), Gaps = 3/347 (0%) Query: 1 MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAIDPSDPSRVLAGADAGI 60 MQGTILVGTAGQGI+RSVD+GATWHRLGLKEAIEFDG VRSLA+DP+DP RV AGAD G+ Sbjct: 1 MQGTILVGTAGQGILRSVDDGATWHRLGLKEAIEFDGTVRSLAVDPADPRRVFAGADVGM 60 Query: 61 CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 120 C+STDGGAHF R+ SP D TVW+IA P NP+ ++AGTGAPSRA M+RS DGG SWQ+L Sbjct: 61 CVSTDGGAHFTRVDSPMDGMTVWAIAIDPKNPRRMYAGTGAPSRAAMFRSVDGGASWQRL 120 Query: 121 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGR--GI 178 ELPEFC GV++PRIL++ V D +EVWFGVEEGG W S D GD+W+R D G I Sbjct: 121 SPELPEFCRGVNRPRILSVCVDPDDGREVWFGVEEGGLWHSRDGGDSWSRQDEEGNADAI 180 Query: 179 NNSDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQAL 238 N DIH + VLPATA AP +V+TVNSV S +D + ASK RFDGMYYTRT+QAL Sbjct: 181 ANPDIHCVAVLPATASAPKTAMVLTVNSVYLS-EDGRRWDGVASKSRFDGMYYTRTVQAL 239 Query: 239 DPQGNQLLLAIGDGTPGTRTRIYRSEDRGQSWQPSVLHTAPNSTVWAFGGHPSDPQLLFA 298 + LLLAIGDGTPGTR++IYRS DRG++WQP++LHTAPNST WAFG H +DP+L FA Sbjct: 240 PDDPDALLLAIGDGTPGTRSKIYRSSDRGRNWQPALLHTAPNSTFWAFGVHAADPRLAFA 299 Query: 299 GTKYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSID 345 GTKYG+L RSTDGGRSW+KEWRDFSEIT+VAWTP+ APV AHPQSI+ Sbjct: 300 GTKYGHLFRSTDGGRSWFKEWRDFSEITAVAWTPYAAPVTAHPQSIN 346 >ref|YP_004234192.1| hypothetical protein Acav_1707 [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45625.1| hypothetical protein Acav_1707 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 352 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 224/344 (65%), Positives = 268/344 (77%), Gaps = 2/344 (0%) Query: 1 MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAIDPSDPSRVLAGADAGI 60 MQGTILVGTAGQGI+RS D+GA+WHRLGLKEAIEFDGVVRSL +DP DP R+ AGADAGI Sbjct: 1 MQGTILVGTAGQGILRSADDGASWHRLGLKEAIEFDGVVRSLLVDPHDPQRIFAGADAGI 60 Query: 61 CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 120 CLS D GAHF+R+ SPA+ VW++A P + ++++AGTGAPSRA M+RS DGG SW +L Sbjct: 61 CLSEDAGAHFRRLESPANGMHVWALAIDPRDARVIYAGTGAPSRAVMFRSLDGGASWTRL 120 Query: 121 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN 180 +ELPEFC+GV++PRIL I V D VWFGVEEGGAW S D GDTW R+D GI N Sbjct: 121 PIELPEFCAGVNRPRILAIAVDPD-DGSVWFGVEEGGAWHSTDRGDTWRRVDDAESGIAN 179 Query: 181 SDIHAITVLPATADAPVKHVVVTVNSVCESTDD-AASFTAKASKERFDGMYYTRTIQALD 239 SDIH I +LPA A P H++ TVNSV ST+ A + A++S +RFDGMYYTR + L+ Sbjct: 180 SDIHCIRILPAAAGQPKTHIIATVNSVYTSTEGPAGPWAAESSADRFDGMYYTRILTPLE 239 Query: 240 PQGNQLLLAIGDGTPGTRTRIYRSEDRGQSWQPSVLHTAPNSTVWAFGGHPSDPQLLFAG 299 LL AIGDGTPGTRT+IYRS+DRG++W PS+LH PNST WA G H +DP L+FAG Sbjct: 240 GDREVLLAAIGDGTPGTRTQIYRSQDRGRTWAPSLLHAVPNSTFWALGTHAADPDLVFAG 299 Query: 300 TKYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQS 343 TKYG+L RS DGGRSW+K+WRDFSEIT+VAWTP A V AHP+S Sbjct: 300 TKYGHLFRSMDGGRSWFKDWRDFSEITAVAWTPVAAAVKAHPKS 343