BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5101.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004234196.1| NIPSNAP family containing protein [Acidovora...   142   1e-32
ref|YP_626320.1| hypothetical protein Bcen_6486 [Burkholderia ce...   112   2e-23
ref|YP_002907806.1| NIPSNAP family protein [Burkholderia glumae ...   110   1e-22
ref|YP_004360129.1| NIPSNAP family protein [Burkholderia gladiol...   108   2e-22
ref|YP_001114783.1| NIPSNAP family protein [Burkholderia vietnam...   105   2e-21

>ref|YP_004234196.1| NIPSNAP family containing protein [Acidovorax avenae subsp.
          avenae ATCC 19860]
 gb|ADX45629.1| NIPSNAP family containing protein [Acidovorax avenae subsp.
          avenae ATCC 19860]
          Length = 98

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/98 (70%), Positives = 80/98 (81%)

Query: 1  MIHELRTYTMVPGGVREYVRIYNECGRAHQVRLLGHLVAMMIPESGDLNQLVYHWAFDSL 60
          MIHE+RTYT+VPGG REY+R+YNE GR  Q RLLG LVA++ PESGDLNQL+YHW FDS 
Sbjct: 1  MIHEIRTYTLVPGGTREYLRLYNEAGREVQTRLLGGLVAVLTPESGDLNQLIYHWVFDSY 60

Query: 61 EDRARRRTALLADPDFAEFRKQVRGLLVQQESRLLTSA 98
          E+R RRR  L+ADP F EFRK VR LLV Q+SRLL+ A
Sbjct: 61 EERVRRRAQLIADPAFTEFRKSVRHLLVSQDSRLLSPA 98


>ref|YP_626320.1| hypothetical protein Bcen_6486 [Burkholderia cenocepacia AU 1054]
 ref|YP_840343.1| NIPSNAP family protein [Burkholderia cenocepacia HI2424]
 gb|ABF81347.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gb|ABK13450.1| NIPSNAP family containing protein [Burkholderia cenocepacia
          HI2424]
          Length = 110

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 71/95 (74%)

Query: 1  MIHELRTYTMVPGGVREYVRIYNECGRAHQVRLLGHLVAMMIPESGDLNQLVYHWAFDSL 60
          M  E RTYT+VPGGV EY+R+Y ECGRA Q   LG +V     E G LNQLVY WAF+SL
Sbjct: 1  MFVEQRTYTLVPGGVAEYLRLYAECGRAPQEHALGTMVGCFATEIGPLNQLVYLWAFESL 60

Query: 61 EDRARRRTALLADPDFAEFRKQVRGLLVQQESRLL 95
          +DRARRR  L+ADP+F  FR +VR LLV+Q++++L
Sbjct: 61 DDRARRRAVLMADPEFRTFRGKVRHLLVRQDNQIL 95


>ref|YP_002907806.1| NIPSNAP family protein [Burkholderia glumae BGR1]
 gb|ACR30571.1| NIPSNAP family protein [Burkholderia glumae BGR1]
          Length = 110

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/110 (54%), Positives = 75/110 (68%), Gaps = 7/110 (6%)

Query: 1   MIHELRTYTMVPGGVREYVRIYNECGRAHQVRLLGHLVAMMIPESGDLNQLVYHWAFDSL 60
           M  E RTYT+VPGGV EY+++Y  CGRA Q R LG +V     E G LNQLVY WAF SL
Sbjct: 1   MFVEQRTYTLVPGGVAEYLQLYAACGRAAQERALGTMVGCFATEIGPLNQLVYLWAFASL 60

Query: 61  EDRARRRTALLADPDFAEFRKQVRGLLVQQESRLLTS-------APEPAA 103
           +DR+RRR  L+ADP+F  FR +VR L+V+QE+++L         AP PAA
Sbjct: 61  DDRSRRRALLMADPEFRTFRGKVRHLVVRQENQILRQEIGGLLPAPPPAA 110


>ref|YP_004360129.1| NIPSNAP family protein [Burkholderia gladioli BSR3]
 gb|AEA60173.1| NIPSNAP family protein [Burkholderia gladioli BSR3]
          Length = 106

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 73/106 (68%)

Query: 1   MIHELRTYTMVPGGVREYVRIYNECGRAHQVRLLGHLVAMMIPESGDLNQLVYHWAFDSL 60
           M  E RTYT+VPGG  EY+++Y E GRA Q R+LG ++     E G LNQLVY W F++L
Sbjct: 1   MFVEQRTYTLVPGGAAEYLKLYREFGRAPQERILGRMIGCFTAEVGTLNQLVYLWPFETL 60

Query: 61  EDRARRRTALLADPDFAEFRKQVRGLLVQQESRLLTSAPEPAAAAA 106
           ++R+RRR AL+ DP+FA FR +VR LLVQQE+ +L       A +A
Sbjct: 61  DERSRRRAALMVDPEFAVFRGKVRHLLVQQENIVLKQEIGAGAPSA 106


>ref|YP_001114783.1| NIPSNAP family protein [Burkholderia vietnamiensis G4]
 gb|ABO58528.1| NIPSNAP family containing protein [Burkholderia vietnamiensis G4]
          Length = 110

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 7/110 (6%)

Query: 1   MIHELRTYTMVPGGVREYVRIYNECGRAHQVRLLGHLVAMMIPESGDLNQLVYHWAFDSL 60
           M  E R YT+VPGGV EY+R+Y ECGRA Q + LG +V     E G LNQLVY WAFDSL
Sbjct: 1   MFVEQRIYTLVPGGVAEYLRLYAECGRAPQEQALGTMVGCFTTEVGPLNQLVYLWAFDSL 60

Query: 61  EDRARRRTALLADPDFAEFRKQVRGLLVQQESRLLT-------SAPEPAA 103
           ++RARRR AL+ADP F  FR +VR LLV+QE+R+L        + P+PAA
Sbjct: 61  DERARRRAALMADPAFGVFRGKVRHLLVRQENRILRQEIGGLLARPQPAA 110