BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5098.p (535 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777322.1| methyl-accepting chemotaxis I (serine chemor... 598 e-169 ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 275 2e-71 ref|YP_984693.1| methyl-accepting chemotaxis sensory transducer ... 274 3e-71 ref|YP_002551838.1| methyl-accepting chemotaxis sensory transduc... 273 7e-71 ref|YP_004126390.1| chemotaxis sensory transducer [Alicycliphilu... 263 4e-68 >ref|YP_003777322.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65414.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 468/535 (87%), Positives = 500/535 (93%) Query: 1 MRQALAALSIAARLRLAFALLLLMLVGMALFSYGRMSHINRQVEQLGSINVPAMESVSGI 60 MRQ A SIAARLRLAF LLLLML+GMA+FSY RMS IN QV+QLG INVPAMESVSGI Sbjct: 1 MRQWFAGFSIAARLRLAFCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGI 60 Query: 61 RIGMAQYRMGVTLALLADDGSGGTAAAQARREGLAYAEKYLKILVDFASNDDERATSRQL 120 RIGMAQYRMGVTL+LL DDGSGG AA +ARR+GLAYAEKYL+ILVDFASNDDERATSRQL Sbjct: 61 RIGMAQYRMGVTLSLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQL 120 Query: 121 SASWQAYRALAEKAVALAAAGQSAEALLLAADSAAPYEQMAGILKFISDSVAQESAASVA 180 ASW+AYR LA KAVALA AGQS+EAL+LAADSA PYEQMA ILKFISDSV+QESAASV Sbjct: 121 VASWKAYRELAGKAVALAQAGQSSEALMLAADSAQPYEQMASILKFISDSVSQESAASVV 180 Query: 181 DGQQAFVSARHALIAVSVAALLGTLVLARLLIGGIAGPLRRAVQAAHRIAEGALDQEITV 240 DG+QA+ SA AL+AVSVAALL TL LARLLI GIA PLRRAV+AA+RIAEGALDQ+I V Sbjct: 181 DGEQAYRSAWRALLAVSVAALLCTLGLARLLIRGIATPLRRAVEAANRIAEGALDQDIVV 240 Query: 241 SGRDEISQLLTAMQRMQQALVGIVAGVRREAEHVATASVQIAAGNADLSTRTEAQAAALE 300 GRDEI+QLL+AMQRMQ ALVGIVAGVRREAEHVATASV+IA+GNADLSTRTEAQAAALE Sbjct: 241 HGRDEIAQLLSAMQRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRTEAQAAALE 300 Query: 301 ETAATMNELSATVQKNAEDARQASGTARQASTVALQGGEVVQEVVQTMRGIEDSSQRISE 360 ETAATMNEL+ATVQKNA+DAR+AS TA+QAS VALQGG+VVQ+VVQTMRGIEDSSQRISE Sbjct: 301 ETAATMNELNATVQKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIEDSSQRISE 360 Query: 361 IVGTIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKALIHE 420 IVGTIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETK LIHE Sbjct: 361 IVGTIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKTLIHE 420 Query: 421 SVARIQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAEVEGAIRQLDDA 480 SVARIQ GARLVD+AGQTM++IVAAVRSVSAIVAQIS+AS+ QS DIAEVEGAIRQLDDA Sbjct: 421 SVARIQAGARLVDQAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEGAIRQLDDA 480 Query: 481 LQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVASGLPLLAQ 535 LQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVASGLPLLAQ Sbjct: 481 LQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVASGLPLLAQ 535 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 218/522 (41%), Positives = 327/522 (62%), Gaps = 1/522 (0%) Query: 8 LSIAARLRLAFALLLLMLVGMALFSYGRMSHINRQVEQLGSINVPAMESVSGIRIGMAQY 67 L IA +L AF ++L+ ++G+ FS ++ +N+ + +P+++++S + + +A+ Sbjct: 7 LKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMSLALARS 66 Query: 68 RMGVTLALLADDGSGGTAAAQARREGLAYAEKYLKILVDFASNDDERATSRQLSASWQAY 127 R LL D A+ + + +A K + S E+ ++ + Y Sbjct: 67 RSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIERNIALY 126 Query: 128 RALAEKAVALAAAGQSAEALLLAADSAAP-YEQMAGILKFISDSVAQESAASVADGQQAF 186 + E+ AL Q A L ++ P Y ++ + +S+ ++ +A S AD + Sbjct: 127 KEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDADADHIY 186 Query: 187 VSARHALIAVSVAALLGTLVLARLLIGGIAGPLRRAVQAAHRIAEGALDQEITVSGRDEI 246 A A++A+ ++ + L+ + +A PL AV A ++A G L +I + RDE Sbjct: 187 GQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPTAHRDET 246 Query: 247 SQLLTAMQRMQQALVGIVAGVRREAEHVATASVQIAAGNADLSTRTEAQAAALEETAATM 306 QLL A+++M L+ IV VR+ + + TAS +IA GN DLS+RTE QA ALEETA+ M Sbjct: 247 GQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALEETASAM 306 Query: 307 NELSATVQKNAEDARQASGTARQASTVALQGGEVVQEVVQTMRGIEDSSQRISEIVGTID 366 EL++TV++N+++ARQA+ A AS VA GG VV +VV TM I DSS++I +I+G ID Sbjct: 307 EELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDIIGVID 366 Query: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKALIHESVARIQ 426 GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ AA E KALI +SVA++ Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDDSVAKVD 426 Query: 427 TGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAEVEGAIRQLDDALQQNAA 486 TG++LVD AGQTM ++VA+V+ VS IVA+I+ A Q+ I ++ A+ Q+D+ QQNAA Sbjct: 427 TGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDENTQQNAA 486 Query: 487 LVEQSAAASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVAS 528 LVEQ+AAA+++L++QAG L TVSVFR+ A VP + A+ Sbjct: 487 LVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAA 528 >ref|YP_984693.1| methyl-accepting chemotaxis sensory transducer [Acidovorax sp. JS42] gb|ABM40617.1| methyl-accepting chemotaxis sensory transducer [Acidovorax sp. JS42] Length = 580 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 232/511 (45%), Positives = 317/511 (62%), Gaps = 1/511 (0%) Query: 5 LAALSIAARLRLAFALLLLMLVGMALFSYGRMSHINRQVEQLGSINVPAMESVSGIRIGM 64 L+ L + RL L+F L+LL+ V +A R+ + QL S + + + S R + Sbjct: 3 LSNLKVGTRLALSFGLVLLITVVIAAVGIWRLQELASVTHQLTSTDNERLRAASTWRQAI 62 Query: 65 AQYRMGVTLALLADDGSGGTAAAQARREGLAYAEKYLKILVDFASNDDERATSRQLSASW 124 + A+L D S ++ + A K +++ + D+ R ++ + Sbjct: 63 DLNWVRTRAAILDADTSHLSSWQSEIAKTSEEASKAQEVVERLVTTDEGRRLLADIAKTR 122 Query: 125 QAYRALAEKAVALAAAGQSAEALLLAADSAAPYEQMAGILKFISDSVAQESAASVADGQQ 184 +AYR + + AAG+S LL + + I+ A + +Q Sbjct: 123 EAYRGPRAELLKRKAAGESVGELLDSQLKPLADAYLQSIVAMEQRQRALYESTRDNAAKQ 182 Query: 185 AFVSARHALIAVSVAALLGTLVLARLLIGGIAGPLRRAVQAAHRIAEGALDQEITVSGRD 244 A +R L+ V+ ALL A LL + GPL+ AV+ A IAEG L Q I GRD Sbjct: 183 A-TRSRAILMVVTAVALLVGAGAAILLSRSVTGPLQLAVRGAGLIAEGDLTQSIQAHGRD 241 Query: 245 EISQLLTAMQRMQQALVGIVAGVRREAEHVATASVQIAAGNADLSTRTEAQAAALEETAA 304 E + LL A+ MQ L +VAGVR AE VA+AS +I+ GN DLS RTE+QA+ALEETAA Sbjct: 242 EAAALLKALGHMQGNLARVVAGVRANAESVASASAEISQGNHDLSGRTESQASALEETAA 301 Query: 305 TMNELSATVQKNAEDARQASGTARQASTVALQGGEVVQEVVQTMRGIEDSSQRISEIVGT 364 +M +L ATV++NA++ARQA+ A ASTVA+QGGEVV EVV TMRGI +SS++I++I+G Sbjct: 302 SMEQLGATVRQNADNARQANQLAMNASTVAVQGGEVVSEVVDTMRGINESSRKIADIIGV 361 Query: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKALIHESVAR 424 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRS+ AA+E K LI SV R Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAEAAKEIKQLITASVER 421 Query: 425 IQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAEVEGAIRQLDDALQQN 484 ++ G++LVD+AG TM ++V A+R V+ I+ +IS AS QSA +A+V AI Q+D A QQN Sbjct: 422 VEQGSQLVDKAGATMTEVVTAIRRVTDIMGEISAASSEQSAGVAQVGEAITQMDQATQQN 481 Query: 485 AALVEQSAAASESLRQQAGNLLGTVSVFRIA 515 AALVE+ AAA+ SL QA L+ V+VF++A Sbjct: 482 AALVEEMAAAASSLSGQARELVEAVAVFKLA 512 >ref|YP_002551838.1| methyl-accepting chemotaxis sensory transducer [Acidovorax ebreus TPSY] gb|ACM31838.1| methyl-accepting chemotaxis sensory transducer [Acidovorax ebreus TPSY] Length = 578 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 233/512 (45%), Positives = 319/512 (62%), Gaps = 1/512 (0%) Query: 5 LAALSIAARLRLAFALLLLMLVGMALFSYGRMSHINRQVEQLGSINVPAMESVSGIRIGM 64 L+ L + RL L+F L+LL+ V +A R+ + QL S + + + S R + Sbjct: 3 LSNLKVGTRLALSFGLVLLITVVIAAVGIWRLQELASVTHQLTSTDNERLRAASTWRQAI 62 Query: 65 AQYRMGVTLALLADDGSGGTAAAQARREGLAYAEKYLKILVDFASNDDERATSRQLSASW 124 + A+L D S ++ + A K +++ + D+ R ++ + Sbjct: 63 DLNWVRTRAAILDADTSHLSSWQSEIAKTSEEASKAQEVVERLVTTDEGRRLLADIAKTR 122 Query: 125 QAYRALAEKAVALAAAGQSAEALLLAADSAAPYEQMAGILKFISDSVAQESAASVADGQQ 184 +AYR + + AAG+S LL + + I+ A + +Q Sbjct: 123 EAYRGPRAELLKRKAAGESVGELLDSQLKPLADAYLQSIVAMEQRQRALYESTRDNAAKQ 182 Query: 185 AFVSARHALIAVSVAALLGTLVLARLLIGGIAGPLRRAVQAAHRIAEGALDQEITVSGRD 244 A +S R L+ V+ ALL A LL + GPL+ AV+ A IAEG L Q I GRD Sbjct: 183 ATLS-RAILMVVTAVALLVGAGAAILLSRSVTGPLQLAVRGAGLIAEGDLTQSIQAHGRD 241 Query: 245 EISQLLTAMQRMQQALVGIVAGVRREAEHVATASVQIAAGNADLSTRTEAQAAALEETAA 304 E + LL A+ MQ L +VAGVR AE VA+AS +I+ GN DLS RTE+QA+ALEETAA Sbjct: 242 EAAALLKALGHMQGNLARVVAGVRANAESVASASAEISQGNHDLSGRTESQASALEETAA 301 Query: 305 TMNELSATVQKNAEDARQASGTARQASTVALQGGEVVQEVVQTMRGIEDSSQRISEIVGT 364 +M +L ATV++NA++ARQA+ A ASTVA+QGGEVV EVV TMRGI +SS++I++I+G Sbjct: 302 SMEQLGATVRQNADNARQANQLAMNASTVAVQGGEVVSEVVDTMRGINESSRKIADIIGV 361 Query: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKALIHESVAR 424 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRS+ AA+E K LI SV R Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAEAAKEIKQLITASVER 421 Query: 425 IQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAEVEGAIRQLDDALQQN 484 ++ G++LVD+AG TM ++V A+R V+ I+ +IS AS QSA +A+V AI Q+D A QQN Sbjct: 422 VEQGSQLVDKAGATMTEVVTAIRRVTDIMGEISAASSEQSAGVAQVGEAITQMDQATQQN 481 Query: 485 AALVEQSAAASESLRQQAGNLLGTVSVFRIAA 516 AALVE+ AAA+ SL QA L+ V+VF++A+ Sbjct: 482 AALVEEMAAAASSLSGQARELVEAVAVFKLAS 513 >ref|YP_004126390.1| chemotaxis sensory transducer [Alicycliphilus denitrificans BC] gb|ADU99502.1| chemotaxis sensory transducer [Alicycliphilus denitrificans BC] Length = 585 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 234/520 (45%), Positives = 325/520 (62%), Gaps = 13/520 (2%) Query: 5 LAALSIAARLRLAFALLLLMLVGMALFSYGRMSHINRQVEQLGSINVPAMESVSGIRIGM 64 L+ + + +L LAFA + L+ + + + + H+N ++ + +P+++++ +R Sbjct: 3 LSDMRVGVKLGLAFAAMALLNLVLGGLAVVWLGHVNEDTREIANKWLPSVQALGDMRATA 62 Query: 65 AQYRMGVTLALLADDGS-----GGTAAAQARREGLAYAEKYLKILVDFASNDDERATSRQ 119 + R A+L D AA R G A ++Y ++ E + Sbjct: 63 NRLRASEIGAVLGSDPQLVPRLREDVAAVGRLLGEA-EQRYAPMVAP-----SEAPLYAE 116 Query: 120 LSASWQAY-RALAEKAVALAAAGQSAEAL-LLAADSAAPYEQMAGILKFISDSVAQESAA 177 AY RA A +A + AEA +L +S + MA + +S + + S A Sbjct: 117 FKNHRDAYLRAQARLMEMVADESRRAEAAHMLYGESQKTFINMAETIGKLSRASHEGSQA 176 Query: 178 SVADGQQAFVSARHALIAVSVAALLGTLVLARLLIGGIAGPLRRAVQAAHRIAEGALDQE 237 + A+ QQ F SAR ++IAV + + L + + P+ AVQAA IA+G L Sbjct: 177 AYAESQQTFGSARGSVIAVLAVVIAAAIALGLWITRLVTRPVAHAVQAAREIAQGNLAAS 236 Query: 238 ITVSGRDEISQLLTAMQRMQQALVGIVAGVRREAEHVATASVQIAAGNADLSTRTEAQAA 297 ++V GRDE+ QL A+ MQ L +V+ VR AE VATAS QIA GN DLS RTE+QA+ Sbjct: 237 LSVHGRDELGQLTQALVDMQANLARVVSDVRANAESVATASAQIAQGNGDLSARTESQAS 296 Query: 298 ALEETAATMNELSATVQKNAEDARQASGTARQASTVALQGGEVVQEVVQTMRGIEDSSQR 357 AL+ETAA+M +L ATV++NA++A QA+ A ASTVA QGGEVV EVV TMRGI D+S + Sbjct: 297 ALQETAASMEQLGATVRQNADNAAQANQLAMSASTVAAQGGEVVSEVVDTMRGINDASHK 356 Query: 358 ISEIVGTIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKAL 417 I++I+G IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+ AA+E K L Sbjct: 357 IADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAEAAKEIKQL 416 Query: 418 IHESVARIQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAEVEGAIRQL 477 I SV R++ G +LVD+AG+TM ++V A+R V+ IV +IS AS QS+ +A+V AI Q+ Sbjct: 417 ITASVERVEQGTQLVDKAGETMTEVVGAIRRVTDIVGEISAASSEQSSGVAQVGEAITQM 476 Query: 478 DDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAAG 517 D A Q+NAALVE+SAAA+ SL+ QA L+ V+VFR+A G Sbjct: 477 DQATQRNAALVEESAAAASSLKAQAAQLVQAVAVFRLAQG 516