BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5095.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777320.1| hypothetical protein Hsero_3941 [Herbaspiril... 874 0.0 ref|YP_003776913.1| hypothetical protein Hsero_3526 [Herbaspiril... 737 0.0 ref|YP_004234204.1| hypothetical protein Acav_1719 [Acidovorax a... 585 e-165 ref|YP_002889949.1| hypothetical protein Tmz1t_2973 [Thauera sp.... 545 e-153 ref|YP_348482.1| hypothetical protein Pfl01_2751 [Pseudomonas fl... 516 e-144 >ref|YP_003777320.1| hypothetical protein Hsero_3941 [Herbaspirillum seropedicae SmR1] gb|ADJ65412.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 454 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 425/454 (93%), Positives = 440/454 (96%) Query: 1 MKRTILGLSLLAMGAALAHAASVQDLGSTLTPLGGDKAAGQGVPEWKAENVELPGWSYGK 60 MKRTILGLS+LA+GA LAHAASVQDLG+TLTPLGGDKAAGQGVPEWKAENVELPGWSYGK Sbjct: 1 MKRTILGLSILAVGATLAHAASVQDLGTTLTPLGGDKAAGQGVPEWKAENVELPGWSYGK 60 Query: 61 LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV 120 LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV Sbjct: 61 LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV 120 Query: 121 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGVGVDFPNTITA 180 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRG+GVDFPNTITA Sbjct: 121 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGLGVDFPNTITA 180 Query: 181 VSPRKGSNEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTT 240 VSPRKGSNEWIKA Q T+F+P KGS LSTL VE+YTY AY+SPTALAGQAL++TT Sbjct: 181 VSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYSSPTALAGQALTVTT 240 Query: 241 FLNQPGGETFYYFPGQRRVRRMPSYAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGK 300 +LN+PG ETFYYFPGQRRVRRMPSYAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGK Sbjct: 241 YLNRPGAETFYYFPGQRRVRRMPSYAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGK 300 Query: 301 KEIYVAYNSFGANNFKANFDDIAKPDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTF 360 KEIY+AYNSFGANNFKANFDDIAKPDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTF Sbjct: 301 KEIYIAYNSFGANNFKANFDDIAKPDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTF 360 Query: 361 YVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACDLAGFAQYNLAEGRYLMDSHSA 420 YVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACDL+GFAQYNLAEGRYLMDSHSA Sbjct: 361 YVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACDLSGFAQYNLAEGRYLMDSHSA 420 Query: 421 GTGKDIRWETEVKDNPRLRDSFYSADNLRAISDR 454 GTGKDIRWETE KDNPRLRD+FYSADNLRAISDR Sbjct: 421 GTGKDIRWETEAKDNPRLRDNFYSADNLRAISDR 454 >ref|YP_003776913.1| hypothetical protein Hsero_3526 [Herbaspirillum seropedicae SmR1] gb|ADJ65005.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 354/430 (82%), Positives = 391/430 (90%), Gaps = 1/430 (0%) Query: 25 DLGSTLTPLGGDKAAGQGVPEWKAENVELPGWSYGKLRKDYFKYKDEKPTEVIDASNVDK 84 DLG++LTPLGGDKA G GVP+WK ENV LPGWSYGKLR+D+FKYKD+K +E IDASNVDK Sbjct: 25 DLGASLTPLGGDKAGGNGVPDWKDENVTLPGWSYGKLRRDFFKYKDDKKSETIDASNVDK 84 Query: 85 YADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFVVENTKKNVADGKIGADGWSLAEAN 144 YA L+ GQ+ALIKQ+KGYKMD+YP+HRYC+APDFVV+NTKKN + K+GADGWSLAEA Sbjct: 85 YASKLSAGQIALIKQIKGYKMDVYPSHRYCSAPDFVVDNTKKNTS-AKLGADGWSLAEAV 143 Query: 145 VPGIPFPLPKTGLEVMYNSKMRYRGVGVDFPNTITAVSPRKGSNEWIKAGSQQTMFFPWA 204 VPGIPFPLPK+G EVMYNSKMRYRGV ++ +TITAVSPRKG +EWIKAGSQQTMFFPWA Sbjct: 144 VPGIPFPLPKSGEEVMYNSKMRYRGVAQEWKSTITAVSPRKGGSEWIKAGSQQTMFFPWA 203 Query: 205 AKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQPGGETFYYFPGQRRVRRMPS 264 AKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQPGGETFYYFPGQRRVRRMPS Sbjct: 204 AKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQPGGETFYYFPGQRRVRRMPS 263 Query: 265 YAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGKKEIYVAYNSFGANNFKANFDDIAK 324 YAYD+PQIGMENQYT+DEP VFNGT+DRFDWKLVGKKE+YV Y SFGA +FKA F+D+A Sbjct: 264 YAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKKEMYVPYGSFGATDFKAKFEDVAG 323 Query: 325 PDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWKH 384 +++AENARRYELHRVWVVEATVK GVRHLAPKRTFYVDEDSWNLV +DDYDAQ KLWKH Sbjct: 324 EEYIAENARRYELHRVWVVEATVKAGVRHLAPKRTFYVDEDSWNLVAADDYDAQGKLWKH 383 Query: 385 REGYIIPVYETGACDLAGFAQYNLAEGRYLMDSHSAGTGKDIRWETEVKDNPRLRDSFYS 444 RE YIIPVYETG+CD AGF QYNLAEGRY+ D HSAGTGKD+ WE + K NPR + SFYS Sbjct: 384 REAYIIPVYETGSCDQAGFTQYNLAEGRYVFDLHSAGTGKDMAWEVDGKGNPRAKASFYS 443 Query: 445 ADNLRAISDR 454 ADNLRAISDR Sbjct: 444 ADNLRAISDR 453 >ref|YP_004234204.1| hypothetical protein Acav_1719 [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45637.1| protein of unknown function DUF1329 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 465 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 273/427 (63%), Positives = 336/427 (78%), Gaps = 3/427 (0%) Query: 30 LTPLGGDKAAGQ--GVPEWKAENVELPGWSYGKLRKDYFKYKDEKPTEVIDASNVDKYAD 87 LTP G +K + +P W+ GW +GKLR + +K+KDEKP IDASN DKYAD Sbjct: 40 LTPSGAEKEGNKDGSIPAWQGAEAPQAGWEWGKLRVESWKHKDEKPLLTIDASNADKYAD 99 Query: 88 HLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFVVENTKKNVADGKIGADGWSLAEANVPG 147 L+ GQ+A+++Q K Y+MD+YP+HR C PDFV NT+KN+ K+ DGWSL EA VPG Sbjct: 100 KLSAGQLAMLRQRKDYRMDVYPSHRTCGVPDFVAANTRKNLGTAKLNDDGWSLKEATVPG 159 Query: 148 IPFPLPKTGLEVMYNSKMRYRGVGVDFPNTITAVSPRKGSNEWIKAGSQQTMFFPWAAKG 207 PFP+P +G+E M+NSKMRYRGVG+D+ TITAVSPR+GS EWI+A S+QT+F P AKG Sbjct: 160 YPFPIPSSGVEAMWNSKMRYRGVGIDYKGTITAVSPRRGSTEWIRADSEQTVFIPSGAKG 219 Query: 208 SVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQPGGETFYYFPGQRRVRRMPSYAY 267 S LS+LPPVE+Y YF Y +P ALAGQAL++T ++NQ ETFYYFPGQRRVRRMP+Y++ Sbjct: 220 STQLSSLPPVEFYVYFGYVAPAALAGQALAITQYINQAENETFYYFPGQRRVRRMPTYSH 279 Query: 268 DAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGKKEIYVAYNSFGANNFKANFDDIAKPDF 327 DAPQIGMENQYT+DEP VFNG +DRFDWKLVGKKE+YV YN+FGA +FKA F+D+AKPDF Sbjct: 280 DAPQIGMENQYTLDEPQVFNGALDRFDWKLVGKKEMYVPYNAFGAFDFKAKFEDVAKPDF 339 Query: 328 VAENARRYELHRVWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWKHREG 387 +A+ RRYELHRVWV+EATVK G+RH APKRT Y+DEDSW VL DD+D QNKL K REG Sbjct: 340 IAQTHRRYELHRVWVIEATVKSGMRHSAPKRTIYLDEDSWAPVLMDDFDGQNKLAKMREG 399 Query: 388 YIIPVYETGACDLAGFAQYNLAEGRYLMDSHSAGTGKDIRWETEVKDNPRLRDSFYSADN 447 ++IPVYETG+CD+ Q NLAEGRY+ D+H+ G GKDIRW TE PR + FY++DN Sbjct: 400 FLIPVYETGSCDVMAMVQNNLAEGRYVFDTHTVGVGKDIRWFTE-PTGPRFKPGFYTSDN 458 Query: 448 LRAISDR 454 LRAIS+R Sbjct: 459 LRAISER 465 >ref|YP_002889949.1| hypothetical protein Tmz1t_2973 [Thauera sp. MZ1T] gb|ACR01572.1| protein of unknown function DUF1329 [Thauera sp. MZ1T] Length = 455 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 269/430 (62%), Positives = 325/430 (75%), Gaps = 4/430 (0%) Query: 27 GSTLTPLGGDKA--AGQGVPEWKAENVELPGWSYGKLRKDYFKYKDEKPTEVIDASNVDK 84 G+TLTPLGG++A A +P W + PGWSYGK R DYFK+K +KP IDA+NVDK Sbjct: 28 GTTLTPLGGERAGNADGSIPAWTEGSALEPGWSYGKPRADYFKHKGDKPLFTIDAANVDK 87 Query: 85 YADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFVVENTKKNVADGKIGADGWSLAEAN 144 YA LT GQVA+IK K YK+++YP+ RYC+APDFV NTK NV KIGADGWSLAEA Sbjct: 88 YAGKLTEGQVAVIKGFKNYKLEVYPSRRYCSAPDFVQANTKANVGMAKIGADGWSLAEAT 147 Query: 145 VPGIPFPLPKTGLEVMYNSKMRYRGVGVDFPNTITAVSPRKGSNEWIKAGSQQTMFFPWA 204 VPGIPFPLP++G+EV++N+KM+Y GV +D +SPR G ++WI+AGS QT ++PW Sbjct: 148 VPGIPFPLPQSGIEVLWNAKMKYAGVALDMKALWVMLSPRSGGSDWIEAGSTQTYYYPWG 207 Query: 205 AKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQPGGETFYYFPGQRRVRRMPS 264 KGS LS LPPVEY+TYF Y SPTALAGQAL +T++LN+ +TFYYFPGQRRVRRMPS Sbjct: 208 KKGSNKLSELPPVEYHTYFNYTSPTALAGQALVITSYLNKT-SDTFYYFPGQRRVRRMPS 266 Query: 265 YAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGKKEIYVAYNSFGANNFKANFDDIAK 324 Y+YDAPQ+G ENQYT+DEP VFNGT DRFDWKLVGKKE+++ Y SFG + A+ + Sbjct: 267 YSYDAPQVGFENQYTLDEPRVFNGTPDRFDWKLVGKKEMFIGYGSFGMYDPAADRRKVVT 326 Query: 325 PDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWKH 384 PD V A RYELHRVWVVEAT K GVRH+APKR FY DEDSW L+ ++DYDAQ KLWK Sbjct: 327 PDGVDPKATRYELHRVWVVEATAKDGVRHVAPKRRFYFDEDSWALMGAEDYDAQGKLWKV 386 Query: 385 REGYIIPVYETGACDLAGFAQYNLAEGRYLMDSHSAGTGKDIRWETEVKDNPRLRDSFYS 444 RE ++IPV ETGACD F QY+L GR L D G GKD+ W E D+P+ +D+FY+ Sbjct: 387 RESFLIPVAETGACDNPAFVQYDLVSGRVLFDQAGMGAGKDMVWAVEA-DDPKYKDAFYT 445 Query: 445 ADNLRAISDR 454 DNLRAISDR Sbjct: 446 PDNLRAISDR 455 >ref|YP_348482.1| hypothetical protein Pfl01_2751 [Pseudomonas fluorescens Pf0-1] gb|ABA74492.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 474 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 250/432 (57%), Positives = 313/432 (72%), Gaps = 4/432 (0%) Query: 26 LGSTLTPLGGDKAAGQG--VPEWKAENVELPGWSYGKLRKDYFKYKDEKPTEVIDASNVD 83 LG+ LTPLGG+ AA +P W + GWS+G++R +K+KD+KP ID+ NV Sbjct: 44 LGTKLTPLGGEAAASADGVIPAWTPPGPQGGGWSHGQVRGQQWKFKDDKPLFSIDSGNVA 103 Query: 84 KYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFVVENTKKNVADGKIGADGWSLAEA 143 KY L+PGQV + K++ GY+MD+YPT R C PDFV ENTKKNV K+ DG +L EA Sbjct: 104 KYTGKLSPGQVEMFKKIPGYRMDVYPTRRSCGVPDFVAENTKKNVGFAKLDGDGLALQEA 163 Query: 144 NVPGIPFPLPKTGLEVMYNSKMRYRGVGVDFPNTITAVSPRKGSNEWIKAGSQQTMFFPW 203 VPGIPFP P +G EVM+N KMRYRGVG D T++ +SPRKGS +W++ + M+ PW Sbjct: 164 YVPGIPFPFPTSGAEVMWNMKMRYRGVGFDMSKTVSGISPRKGSEDWLRTSTDWFMYTPW 223 Query: 204 AAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQPGGETFYYFPGQRRVRRMP 263 KGS S+ +E TYF+Y+ P ALAGQA +TT + TFYYFPGQRRVRRMP Sbjct: 224 GVKGSALFSSFDRLEVATYFSYSDPAALAGQAGVVTTKAGEQA-TTFYYFPGQRRVRRMP 282 Query: 264 SYAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGKKEIYVAYNSFGANNFKANFDDIA 323 +Y+YDAPQIG++NQYT+DE VF G MDRFDWKLVGK+E+ V YNSFGA + A +D+A Sbjct: 283 AYSYDAPQIGLDNQYTIDESNVFFGPMDRFDWKLVGKQEMLVPYNSFGAYDNSAKIEDVA 342 Query: 324 KPDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWK 383 K DF+A +RRYELHRVWVVEATV+ G+RH APKR FY+DEDSWN +++ DYD Q ++WK Sbjct: 343 KRDFIAPESRRYELHRVWVVEATVRQGMRHQAPKRLFYIDEDSWNALMAVDYDKQGQIWK 402 Query: 384 HREGYIIPVYETGACDLAGFAQYNLAEGRYLMDSHSAGTGK-DIRWETEVKDNPRLRDSF 442 REGY IPVYETG CD+ AQYNL +GRYL D S GTGK D RW T+ +NPRL+ F Sbjct: 403 VREGYTIPVYETGTCDMEAQAQYNLVDGRYLYDMTSIGTGKNDHRWLTDSANNPRLKRDF 462 Query: 443 YSADNLRAISDR 454 Y++DNLRA S+R Sbjct: 463 YTSDNLRATSER 474