BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5094.p (579 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777319.1| hypothetical protein Hsero_3940 [Herbaspiril... 1030 0.0 ref|YP_003776914.1| hypothetical protein Hsero_3527 [Herbaspiril... 740 0.0 ref|YP_004234203.1| hypothetical protein Acav_1718 [Acidovorax a... 574 e-161 ref|YP_348481.1| hypothetical protein Pfl01_2750 [Pseudomonas fl... 479 e-133 ref|NP_744955.1| hypothetical protein PP_2811 [Pseudomonas putid... 476 e-132 >ref|YP_003777319.1| hypothetical protein Hsero_3940 [Herbaspirillum seropedicae SmR1] gb|ADJ65411.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 1030 bits (2663), Expect = 0.0, Method: Composition-based stats. Identities = 537/581 (92%), Positives = 558/581 (96%), Gaps = 2/581 (0%) Query: 1 MKKPMRKT-RRAGSALPRMLPIVVPLMGACLYTGNAQAFTFEGESVSGNFDSTVTVGVGI 59 MK +RK RR GSALPRMLP+V+PLMGACLY+GNAQAFTFE ESVSGNFDSTVT+GVGI Sbjct: 1 MKMQLRKKLRRTGSALPRMLPVVLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGI 60 Query: 60 RASKPVCAGIIGSVNGGQPSGPTGAGAPDGCADSLSQYNDQGNLNYDRGSAFTTYIKGTH 119 RA+KP C+ IIG+VNGGQPSGPTGAGAP GCADSLSQYNDQGNLNYDRGSAFTTY+KGTH Sbjct: 61 RAAKPGCSSIIGTVNGGQPSGPTGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTH 120 Query: 120 ELMLKLPSDVKFLGRVSWLRDFAA-DSATGYVSGGGGSSFPGNAASQVRNKTRLLDLWVS 178 ELMLKLP D KFLGRVSW+RDFAA S TGYVSGGGGS+FPGNA+ QV NKTRLLDLWVS Sbjct: 121 ELMLKLPDDFKFLGRVSWMRDFAAATSTTGYVSGGGGSTFPGNASGQVSNKTRLLDLWVS 180 Query: 179 KEFSIGEQRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN 238 KEFSIG+QRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN Sbjct: 181 KEFSIGDQRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN 240 Query: 239 FATGLGHGLSVETYVQQGWQRNYFPPVGSYWSIGTIGNGASELGVPTTSTPRSSGQYGVA 298 FATGLG G S+ETY+QQGWQRNYFPPVGSYWSIGTIGNGA ELGVPTTSTPRSSGQYGVA Sbjct: 241 FATGLGKGFSIETYLQQGWQRNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVA 300 Query: 299 LRYSPKDTEMNFGLYLMNYHDKSPVMSTSTSSVSGFGYSYLQDRKMIGASMNFPVGNWAV 358 LRYSPKD+EMNFGLYLMNYHDKSPVMSTSTSS+SGFGYSYLQDRKMIGASMNFPVGNWAV Sbjct: 301 LRYSPKDSEMNFGLYLMNYHDKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAV 360 Query: 359 GTELSYRPKDPITLNTSTAGKSPTTNGSGCLANGNCYVETAKYQLAVTGLLSMTPSDNPT 418 GTELSYRPKDPITLNTSTAG SPTTNG+GCLANGNCYVETAKYQLAVTGLLSMTPSDNPT Sbjct: 361 GTELSYRPKDPITLNTSTAGNSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPT 420 Query: 419 ILKMLGGADTATLMAEAVGIYYPNMKKSYQGIPVAAGNWGWGYDTTANAIATGAGSPPSV 478 ILK LGGADTATLMAEAVGIYYPNMK +YQGIPVAAGNWGWGYDT+ANA ATGAG+PPSV Sbjct: 421 ILKALGGADTATLMAEAVGIYYPNMKSAYQGIPVAAGNWGWGYDTSANARATGAGTPPSV 480 Query: 479 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF 538 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF Sbjct: 481 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF 540 Query: 539 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF 579 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF Sbjct: 541 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF 581 >ref|YP_003776914.1| hypothetical protein Hsero_3527 [Herbaspirillum seropedicae SmR1] gb|ADJ65006.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 378/562 (67%), Positives = 451/562 (80%), Gaps = 11/562 (1%) Query: 22 VVPLMGACLYTGNAQAFTFEGESVSGNFDSTVTVGVGIRASKPVCAGIIGSVNGGQPSGP 81 ++ L A L +G AQA TFEGE+VSGNFDSTV+ GVG+RASK C +IGS + G +G Sbjct: 9 IIALAAATLCSGGAQAMTFEGETVSGNFDSTVSFGVGVRASKQACGLVIGS-SAGNAAGA 67 Query: 82 TGAGAPDGCADSLSQYNDQGNLNYDRGSAFTTYIKGTHELMLKLPSDVKFLGRVSWLRDF 141 +G AP GCAD+LS NDQG+LNY+RG FTTY+KGTHEL+L +P DVKFLGRVSWLRD+ Sbjct: 68 SGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRVSWLRDY 127 Query: 142 AADSATGYVSGGG--GSSFPGNAASQVRNKTRLLDLWVSKEFSIGEQRARLRVGNQVVNW 199 +A TG +SGG G S +A +++ +K RLLDLWVSK F +GE+RAR+RVGNQVVNW Sbjct: 128 SATRNTGNISGGNPTGRSLSDDATNELHSKVRLLDLWVSKSFDLGEERARIRVGNQVVNW 187 Query: 200 GESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGHGLSVETYVQQGWQR 259 GESLFI GGINQTNA+D+MRLS PGTQ+KEA+LPAPMVNFATGLG G SVETYVQQGW+ Sbjct: 188 GESLFIAGGINQTNAIDIMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETYVQQGWES 247 Query: 260 NYFPPVGSYWSIGTIGNGASELGVPTTSTPRSSGQYGVALRYSPKDTEMNFGLYLMNYHD 319 NYFPPVGSYWS T+G GA LGVP TS PRS+GQYGVALRY+P ++NFGLY+MNYHD Sbjct: 248 NYFPPVGSYWSTATVGIGAEALGVPVTSRPRSTGQYGVALRYTPPGADVNFGLYVMNYHD 307 Query: 320 KSPVMSTSTSSVSGFGYSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAGK 379 KSPV+ST+ + SG GYSYL+DRKM+G S NFP+GNWA+GTELSYRPKDP++LN G Sbjct: 308 KSPVLSTANTP-SGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDPVSLN----GS 362 Query: 380 SPTTNGSGCLANGNCYVETAKYQLAVTGLLSMTPSDNPTILKMLGGADTATLMAEAVGIY 439 P NG C+ NG CYVE KYQLAVTGLLS++PS++ ++LK L GADTATLM EAV I Sbjct: 363 VPNANGGFCMVNGKCYVEAEKYQLAVTGLLSLSPSEHGSVLKAL-GADTATLMVEAVAIK 421 Query: 440 YPNMKKSYQGIPVAAGNWGWGYDTTANAIATGA--GSPPSVGTALSYGYNLDFSWVYDGS 497 YPN+K SY GIPVAAG WGWGYDTTANA T A G+ VG++ SYGYN DFSWVYDGS Sbjct: 422 YPNLKSSYGGIPVAAGLWGWGYDTTANANRTLANGGNTAGVGSSTSYGYNFDFSWVYDGS 481 Query: 498 LIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWGG 557 +IPGWQV+PE+++F A+ GRTPN TFM+GAK ANF V+F+QNPAKWQ +LN+A FWGG Sbjct: 482 VIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFMQNPAKWQVALNFAKFWGG 541 Query: 558 DTIFDQPLRGRNFVGATATYNF 579 ++FDQPLR R+F G T + NF Sbjct: 542 ASVFDQPLRDRSFYGMTVSRNF 563 >ref|YP_004234203.1| hypothetical protein Acav_1718 [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45636.1| protein of unknown function DUF1302 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 549 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 297/549 (54%), Positives = 387/549 (70%), Gaps = 31/549 (5%) Query: 37 AFTFEGESVSGNFDSTVTVGVGIRASKPVCAGIIGSVNGGQPSGPTGAGAPDGCADSLSQ 96 A TFE E++ G+FDSTVT+G GIR P C + +G TG GAP GC S Sbjct: 26 AMTFETENIRGSFDSTVTIGTGIRMKDPACTLV--------NAGATGDGAPAGCLAPTSA 77 Query: 97 YNDQGNLNYDRGSAFTTYIKGTHELMLKLPSDVKFLGRVSWLRDFAADSATGYVSGGGGS 156 DQGNLNY +G AFTTY+KG+HEL+LKLPSD+ FLGRV+W++DF A TGY++ G S Sbjct: 78 LGDQGNLNYAKGDAFTTYLKGSHELLLKLPSDITFLGRVNWIKDFTASDTTGYLAAGAPS 137 Query: 157 SF----PGNAASQVRNKTRLLDLWVSKEFSIGEQRARLRVGNQVVNWGESLFIPGGINQT 212 +A +R K RLLDLWVSK F IG+QRAR+RVGNQV+NWGESLF+ GGIN T Sbjct: 138 GLRDGLAPDARRDLRFKARLLDLWVSKSFDIGDQRARVRVGNQVINWGESLFLSGGINST 197 Query: 213 NALDLMRLSQPGTQMKEAVLPAPMVNFATGLGHGLSVETYVQQGWQRNYFPPVGSYWSIG 272 NA+D+MR SQPGTQ+KE +LPAPMV+ A+GLGHGL+VE YVQ W NY PP GSYWS Sbjct: 198 NAVDVMRASQPGTQLKEVLLPAPMVSVASGLGHGLNVEAYVQTHWNGNYMPPTGSYWSTA 257 Query: 273 T-IGNGASELGVPTTSTPRSSGQYGVALRYSPKDTEMNFGLYLMNYHDKSPVMSTSTSSV 331 +G G G+ + PR+SGQ+GVALRY P+ T +N G Y++NY DK S++ + Sbjct: 258 NGLGKGHDTYGL-VEAKPRNSGQWGVALRYQPEGTSLNLGAYVLNYQDKGANFSSNVNGT 316 Query: 332 SGFGYSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAGKSPTTNGSGCLAN 391 G+++ ++R++ G S N PVG+W+VGTELSYRP+D ++LN++ +GC + Sbjct: 317 GRAGWAFAENRRLYGVSANMPVGDWSVGTELSYRPRDAVSLNSA---------ATGCASQ 367 Query: 392 -GNCYVETAKYQLAVTGLLSMTPSDNPTILKMLGGADTATLMAEAVGIYYPNMKKSYQGI 450 GNC+V+ K+Q +TGL S+TPS+ +L +L GA TATLMAE V + YP++++ Y Sbjct: 368 GGNCWVDEKKFQWHLTGLYSVTPSNGQWLLDLL-GASTATLMAETVVVRYPHLRQLYGAD 426 Query: 451 PVAAGNWGWGYDTTANAIATGAGSPPSVGTALSYGYNLDFSWVYDGSLIPGWQVVPEIFY 510 P++AG WGWG + A A SP +G+ ++GYNLDFSWVYDG++IPGWQV+PEI+Y Sbjct: 427 PISAGAWGWGQEFDAGA------SPSPMGSKTAWGYNLDFSWVYDGTVIPGWQVIPEIYY 480 Query: 511 FQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNF 570 FQA+ GRTPN AG M+GAKS N VSF+QNPAKWQ S+NYA F+GG +FDQPLR RN+ Sbjct: 481 FQAVKGRTPNAAGQLMEGAKSINLTVSFVQNPAKWQASINYAAFFGGKRVFDQPLRDRNY 540 Query: 571 VGATATYNF 579 +G T + NF Sbjct: 541 LGFTLSRNF 549 >ref|YP_348481.1| hypothetical protein Pfl01_2750 [Pseudomonas fluorescens Pf0-1] gb|ABA74491.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 548 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 266/550 (48%), Positives = 340/550 (61%), Gaps = 40/550 (7%) Query: 35 AQAFTFEGESVSGNFDSTVTVGVGIRASKPVCAGIIGSVNGGQPSGPTGAGAPDGCADSL 94 A AFTFE E++ G+FDST+ VG+G+R C I S P G P GC Sbjct: 20 AMAFTFETENIRGSFDSTLAVGMGLRTESRGCNLITSS--------PGGHNPPSGCLAPS 71 Query: 95 SQYNDQGNLNYDRGSAFTTYIKGTHELMLKLPSDVKFLGRVSWLRDFAADSATGYVS--- 151 + DQG+LNYDRG FT YIKGTHEL+LK P D F+ R SW+RDFAA +G +S Sbjct: 72 ANIGDQGDLNYDRGDLFTNYIKGTHELVLKFPEDYTFMARGSWIRDFAATDTSGALSANR 131 Query: 152 --GGGGSSFPGNAASQVRNKTRLLDLWVSKEFSIGEQRARLRVGNQVVNWGESLFIPGGI 209 G G +A + K RLLDLWVSK F +GEQR R R+GNQV+NWGESLF GGI Sbjct: 132 PEGVGSDGLTSSARDDLEFKARLLDLWVSKSFDVGEQRVRARLGNQVINWGESLFAAGGI 191 Query: 210 NQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGHGLSVETYVQQGWQRNYFPPVGSYW 269 N TNA D+M LS+PGTQ+KEA+LPAPM++ A+GLG G+++E Y Q W ++ PPVGSYW Sbjct: 192 NNTNAYDVMALSRPGTQLKEALLPAPMLSLASGLGAGVNIEAYWQFNWNKSELPPVGSYW 251 Query: 270 SIG-TIGNGASELGVPTTSTPRSSGQYGVALRYSPKDTEMNFGLYLMNYHDKSPVMSTST 328 S +G G G R+ GQ+GV+LR+ P +T++N GLY+M YHDK P +S Sbjct: 252 STTHALGEGRGAYGYDEKDA-RNGGQWGVSLRWQPDNTDLNLGLYVMRYHDKLPSLSMQV 310 Query: 329 SSVSGFG----YSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAGKSPTTN 384 F + Y +DR M G S N PVG+WA+GTELSYRPKD + LN P + Sbjct: 311 LDPETFALAQTWKYPEDRMMYGISANMPVGDWALGTELSYRPKDAVPLN-------PVID 363 Query: 385 GSGCLAN-GNCYVETAKYQLAVTGLLSMTPSDNPTILKMLGGADTATLMAEAVGIYYPNM 443 C +N G C+ + K Q +TG+ SMTPS++PT+L L GA T TL++E V + YP + Sbjct: 364 --ACASNGGKCWKDEKKLQWHLTGIYSMTPSNSPTLLD-LTGASTGTLLSELVVVKYPGL 420 Query: 444 KKSYQGIPVAAGNWGWGYDTTANAIATGAGSPPSV-GTALSYGYNLDFSWVYDGSLIPGW 502 Y G P+AAG W D + PPS G S G +LDFS YD +LIPGW Sbjct: 421 HNEYAGEPIAAGLNTWQLDPSI---------PPSAKGNKTSSGISLDFSLTYDNTLIPGW 471 Query: 503 QVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWGGDTIFD 562 QV P +FY Q++ GRTPN + TF + A S N ++F++NPA WQ S NYA F GG T +D Sbjct: 472 QVTPGVFYSQSIKGRTPNLSATFTEDASSMNLYLNFVRNPASWQISANYAKFMGGKTPYD 531 Query: 563 QPLRGRNFVG 572 Q LR R++VG Sbjct: 532 QLLRDRDYVG 541 >ref|NP_744955.1| hypothetical protein PP_2811 [Pseudomonas putida KT2440] gb|AAN68419.1|AE016474_8 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 548 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 259/548 (47%), Positives = 342/548 (62%), Gaps = 36/548 (6%) Query: 35 AQAFTFEGESVSGNFDSTVTVGVGIRASKPVCAGIIGSVNGGQPSGPTGAGAPDGCADSL 94 A FTFE E+++G+FDST+T G+G+R C I GPTG P GC Sbjct: 20 AMGFTFETETLNGSFDSTITAGMGLRTESRGCNLI--------NQGPTGHNVPSGCLAQS 71 Query: 95 SQYNDQGNLNYDRGSAFTTYIKGTHELMLKLPSDVKFLGRVSWLRDFAADSATGYVS--- 151 S DQG+LNYDRG FT Y+KGTHEL+LK+P DV F+ R +W+RDFAA TG +S Sbjct: 72 SGVADQGDLNYDRGDMFTNYLKGTHELLLKMPEDVTFMARGTWIRDFAATDTTGTLSFNT 131 Query: 152 --GGGGSSFPGNAASQVRNKTRLLDLWVSKEFSIGEQRARLRVGNQVVNWGESLFIPGGI 209 G + +A + K RLLDLWVSK F +G QR R R+GNQV+NWGESLF+ GGI Sbjct: 132 PESVGSNGLSDDARDDLAFKARLLDLWVSKGFDVGGQRVRARLGNQVINWGESLFVAGGI 191 Query: 210 NQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGHGLSVETYVQQGWQRNYFPPVGSYW 269 N TNA D L++PG Q+KEAVLPAPM++ A+GLG G++VE Y Q W ++ PPVGSYW Sbjct: 192 NNTNAYDYQALARPGVQLKEAVLPAPMLSVASGLGSGVNVEAYYQFRWNKSELPPVGSYW 251 Query: 270 S-IGTIGNGASELGVPTTSTPRSSGQYGVALRYSPKDTEMNFGLYLMNYHDKSPVMSTST 328 S +G G + G + R SGQ+G++LR+ P+D+++N+G Y+M YHDK P + + Sbjct: 252 SNTNALGEGRGDYGF-SEKDARDSGQWGLSLRWQPEDSDINYGFYVMRYHDKLPSLRVAI 310 Query: 329 SSVSGFG----YSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAGKSPTTN 384 + F + Y ++R M G S N P+G+WAVGTELSYRPKD + LN ++N Sbjct: 311 LDPNTFAAAPTWEYQENRMMYGVSANMPIGDWAVGTELSYRPKDSVMLNPVV--DLCSSN 368 Query: 385 GSGCLANGNCYVETAKYQLAVTGLLSMTPSDNPTILKMLGGADTATLMAEAVGIYYPNMK 444 G G C+ + K+Q +TGL S TPS++PT+L GA T TL++E V I YP + Sbjct: 369 G------GKCWKDEKKFQWHLTGLYSFTPSNSPTLLD-FTGASTGTLLSELVVIKYPGLH 421 Query: 445 KSYQGIPVAAGNWGWGYDTTANAIATGAGSPPSVGTALSYGYNLDFSWVYDGSLIPGWQV 504 G P+A G W D A +P S G S G NLDFS YDG+L+PGWQV Sbjct: 422 DEVNGEPLAPGLNAWQLDP--------ATAPKSRGDKTSSGINLDFSLTYDGTLLPGWQV 473 Query: 505 VPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWGGDTIFDQP 564 P +FY ++L GRTPN + TF + A S N ++F++NPA WQ SLNYA F GG+T +DQ Sbjct: 474 TPGVFYSRSLGGRTPNLSATFTEDASSMNLYLNFVRNPASWQISLNYAKFMGGETPYDQL 533 Query: 565 LRGRNFVG 572 R R++VG Sbjct: 534 YRDRDYVG 541