BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5092.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777317.1| oxidoreductase [Herbaspirillum seropedicae S... 583 e-164 ref|YP_003776916.1| plant photosystem II stability/assembly fact... 289 6e-76 ref|YP_001861017.1| hypothetical protein Bphy_4866 [Burkholderia... 242 8e-62 ref|YP_001892848.1| glycosyl hydrolase, BNR repeat [Ralstonia pi... 237 2e-60 ref|YP_002889946.1| hypothetical protein Tmz1t_2970 [Thauera sp.... 236 6e-60 >ref|YP_003777317.1| oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65409.1| oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 327 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 322/327 (98%), Positives = 325/327 (99%) Query: 10 MNVWKTLLWLALAGCSTLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGARD 69 MNVWKTLLWLALAGCSTLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGAR Sbjct: 1 MNVWKTLLWLALAGCSTLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGARG 60 Query: 70 EVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHSADGGETWQVQRSA 129 EVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIH+ADGGETWQ+QRSA Sbjct: 61 EVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSA 120 Query: 130 TEVDQPLFTVYFRDREHGWAAGLWSLLLQTEDGGKTWTPLHLPVAAGSKRSDLNLLRFFP 189 T+VDQPLFTVYFRDREHGWAAGLWSLLLQTEDGGKTWT LHLPVAAGSKRSDLNLLRFFP Sbjct: 121 TDVDQPLFTVYFRDREHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFP 180 Query: 190 GSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRS 249 GSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRS Sbjct: 181 GSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRS 240 Query: 250 TDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTI 309 TDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTI Sbjct: 241 TDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTI 300 Query: 310 LVNRLGQVLPFSKEGVLKPVEGVAAKP 336 LVNRLGQVLPFSKEGVLKPVEGVAAKP Sbjct: 301 LVNRLGQVLPFSKEGVLKPVEGVAAKP 327 >ref|YP_003776916.1| plant photosystem II stability/assembly factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65008.1| plant photosystem II stability/assembly factor protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 157/266 (59%), Positives = 197/266 (74%), Gaps = 1/266 (0%) Query: 44 DRFADRAMMLDAALAGERVVAVGARDEVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKE 103 D A MML AA AG R+VAVGA +ILSDDGG +RQA QVPVD TLT+VSF D + Sbjct: 40 DAHALHNMMLGAARAGSRIVAVGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADASQ 99 Query: 104 GWAVGHGGVVIHSADGGETWQVQRSATEVDQPLFTVYFRDREHGWAAGLWSLLLQTEDGG 163 GWA GHGGV++H+ADGG+TW +QRS T VDQPLF+++F + GWAAGLWSLLL T+DGG Sbjct: 100 GWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQDGG 159 Query: 164 KTWTPLHLPVAAGSKRSDLNLLRFFPGSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKA 223 K+W + LP A G +R+DLNLL FPG L++AAEQG L+RS D GQHW+ LATG+KA Sbjct: 160 KSWQQVKLPAAPGQQRADLNLLHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGTKA 219 Query: 224 SLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQWQTVALPTSGSITRVQATPGLLTAASLE 283 SLWSG V+ +GA++V GLGGKLLRS DGG WQ +A PTSGSIT +++ + A+SL Sbjct: 220 SLWSG-VSTASGAIVVGGLGGKLLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSLS 278 Query: 284 GKILQSRDEGVSWQVLWSAPQGLTTI 309 G +L S D+G W++ +A LTT+ Sbjct: 279 GALLASDDDGRQWRIKATARDALTTL 304 >ref|YP_001861017.1| hypothetical protein Bphy_4866 [Burkholderia phymatum STM815] gb|ACC73971.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 329 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 142/304 (46%), Positives = 185/304 (60%), Gaps = 2/304 (0%) Query: 25 STLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGARDEVILSDDGGRQWRQA 84 S L A G + + A R A +L + AG R+VAVG V+ SDDGG+ + QA Sbjct: 27 SQLPALSGHAELRLGEAERTRSAAHTQILGVSRAGSRIVAVGDHGVVLRSDDGGKTFNQA 86 Query: 85 RQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHSADGGETWQVQRSATEVDQPLFTVYFRDR 144 R VPVD TLTAVSFVD K GWAVGH GV+I + DGGETW ++RS T+VDQPLF+V+F D Sbjct: 87 RSVPVDSTLTAVSFVDSKNGWAVGHWGVIIRTRDGGETWVLERSDTKVDQPLFSVHFDDA 146 Query: 145 EHGWAAGLWSLLLQTEDGGKTWTPLHLPVAAGSKRSDLNLLRFFPGSGDTLYLAAEQGTL 204 EHGWA GLWSLLL TEDGG+TW + P+ G+K++D N +LY+A EQG + Sbjct: 147 EHGWAVGLWSLLLHTEDGGRTWHSVSAPIPPGAKKADRNFFSVVGDGKGSLYIACEQGLV 206 Query: 205 FRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQWQTVALPTS 264 RS D GQ W TG SLWS AV G LIV GL G + RSTD G WQ + Sbjct: 207 LRSRDGGQTWSYSQTGYDGSLWS-AVVLNDGTLIVGGLRGTIYRSTDNGETWQRSESQSK 265 Query: 265 GSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLW-SAPQGLTTILVNRLGQVLPFSKE 323 SIT G + A++L+G +L+S+D G ++ S + LT I+ + G ++ FS+ Sbjct: 266 SSITDFSVHSGKIVASALDGVVLESKDGGKTFSSTQRSGREALTAIVQSASGSLVLFSQG 325 Query: 324 GVLK 327 G+ + Sbjct: 326 GIAR 329 >ref|YP_001892848.1| glycosyl hydrolase, BNR repeat [Ralstonia pickettii 12J] ref|YP_002984350.1| BNR repeat-containing glycosyl hydrolase [Ralstonia pickettii 12D] gb|ACD29421.1| glycosyl hydrolase, BNR repeat [Ralstonia pickettii 12J] gb|ACS65678.1| BNR repeat-containing glycosyl hydrolase [Ralstonia pickettii 12D] Length = 323 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 139/277 (50%), Positives = 179/277 (64%), Gaps = 2/277 (0%) Query: 51 MMLDAALAGERVVAVGARDEVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHG 110 M+LDA AG+R+VAVG V+LSDD G+ +RQAR VP TL+AVSF D++ GWAVG Sbjct: 45 MLLDATRAGKRIVAVGEHGIVLLSDDEGQTYRQARTVPASATLSAVSFADERHGWAVGQW 104 Query: 111 GVVIHSADGGETWQVQRSATEVDQPLFTVYFRDREHGWAAGLWSLLLQTEDGGKTWTPLH 170 GV++ ++DGGETWQ QR T VDQPLF+V F + G A GLWSL+LQT DGGKTWT Sbjct: 105 GVILATSDGGETWQKQRMDTAVDQPLFSVLFTNDRDGIAIGLWSLMLQTHDGGKTWTKTT 164 Query: 171 LPVAAGSKRSDLNLLRFFPGSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAV 230 LP G R+D NL F Y++AEQGT+ +STD G WD LATG K SLWSG V Sbjct: 165 LPKPPGGGRADRNLYHVFADGKGAFYISAEQGTVLKSTDGGATWDYLATGGKGSLWSG-V 223 Query: 231 AQPAGALIVAGLGGKLLRSTDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSR 290 A P G ++V GL G L +S+DGG+ WQ + T SIT + A+ A L+G +L+ R Sbjct: 224 AMPDGRIVVGGLLGSLFQSSDGGANWQPLKAETKSSITGLVASGNGFVAVGLDGLVLKQR 283 Query: 291 DEGVSWQVLWSAPQ-GLTTILVNRLGQVLPFSKEGVL 326 ++G V + LT +++ G+ + FSKEGVL Sbjct: 284 EDGAPLAVAQREDRAALTAAVIDAGGKPILFSKEGVL 320 >ref|YP_002889946.1| hypothetical protein Tmz1t_2970 [Thauera sp. MZ1T] gb|ACR01569.1| conserved hypothetical protein [Thauera sp. MZ1T] Length = 343 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 142/289 (49%), Positives = 175/289 (60%), Gaps = 1/289 (0%) Query: 39 RAAVADRFADRAMMLDAALAGERVVAVGARDEVILSDDGGRQWRQARQVPVDFTLTAVSF 98 R AV FA+ +M+LDA AG R+VAVG R V+LSDD G WRQA VPVD TLTAVSF Sbjct: 56 RPAVRSPFAEHSMILDATRAGTRLVAVGERGVVLLSDDEGAHWRQAGTVPVDATLTAVSF 115 Query: 99 VDDKEGWAVGHGGVVIHSADGGETWQVQRSATEVDQPLFTVYFRDREHGWAAGLWSLLLQ 158 D +EGWAVGH GV++HSADGGETW VQR D+PLF V F D +G A GLWSL+L+ Sbjct: 116 ADAREGWAVGHLGVILHSADGGETWSVQRIDPVEDRPLFAVAFTDARNGVAVGLWSLMLR 175 Query: 159 TEDGGKTWTPLHLPVAAGSKRSDLNLLRFFPGSGDTLYLAAEQGTLFRSTDAGQHWDILA 218 T DGG+TW LP G R+D NL+ F L++A E+G + RS D G W Sbjct: 176 TRDGGRTWEAAELPPPPGDTRADANLMSVFGDGEGRLFIAGERGLVLRSLDGGATWSYHP 235 Query: 219 TGSKASLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQWQTVALPTSGSITRVQATPGLLT 278 TG + + WSG A G LIV GL G + RSTD G WQ V + S+T + A G + Sbjct: 236 TGYRGTFWSGT-ALADGTLIVGGLRGSVYRSTDNGEHWQRVETGSQSSVTDLVAFDGRVH 294 Query: 279 AASLEGKILQSRDEGVSWQVLWSAPQGLTTILVNRLGQVLPFSKEGVLK 327 A L+G L SRD G S+ V A + T V G VL FS+ G+++ Sbjct: 295 AVGLDGVSLDSRDGGASFAVERRADRLSLTAAVATAGGVLHFSRAGLVR 343