BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5089.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777314.1| hypothetical protein Hsero_3935 [Herbaspiril...    95   3e-18

>ref|YP_003777314.1| hypothetical protein Hsero_3935 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65406.1| hypothetical protein Hsero_3935 [Herbaspirillum seropedicae SmR1]
          Length = 97

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 60  MKKMSFLMLAAGSLAMLAAAKPVLRRYDDLNRRRAGTAPADTASGQPAIIGEEDMQPVAQ 119
           MKK+S  MLAAGSLAMLA A+PV R+YDD+NRRR      +T +G P  +GE+DMQ VAQ
Sbjct: 1   MKKLSLFMLAAGSLAMLACARPVKRQYDDINRRRR----TETDAGMPRTLGEQDMQAVAQ 56

Query: 120 ESSIVADGTQHHDPAGAPPVQAAAVDAPPRKDGDFAPPVGA 160
           ESS+VA   Q H P  A P Q A  DA  RKDGDFAPPVGA
Sbjct: 57  ESSMVAPPAQQHTPNSAAPSQPATADAAARKDGDFAPPVGA 97