BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5088.p (906 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777313.1| periplasmic glucans biosynthesis protein [He... 840 0.0 ref|ZP_00945394.1| Periplasmic glucans biosynthesis protein mdoG... 757 0.0 ref|YP_298866.1| glucan biosynthesis protein D [Ralstonia eutrop... 756 0.0 ref|YP_002257221.1| periplasmic glucans biosynthesis protein [Ra... 756 0.0 ref|NP_521823.1| glucan biosynthesis protein D [Ralstonia solana... 755 0.0 >ref|YP_003777313.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65405.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 428/545 (78%), Positives = 455/545 (83%), Gaps = 21/545 (3%) Query: 381 MPSRRQFLAAASTASALAALGLSPR---ALAAQGLRLGRAQPFSFDSLIARARDMARTPY 437 M SRR+FL A + AAL ALAAQG+ QPFSF LI RAR MA TPY Sbjct: 2 MTSRRRFLCATGATATAAALSALGLPSGALAAQGIETSAPQPFSFAQLIERARQMASTPY 61 Query: 438 QAPPAVPADVLDKIDYEAHGKIRFKTADALFAQGPGAFPVTFFHLGKFFRVPVRMFILAG 497 Q A PA +LD+IDY+AHGKIRFK A FA GPG FP+TFFHLGKFFRVPVRMF+L G Sbjct: 62 QPAAAAPAAILDRIDYDAHGKIRFKPDRAAFATGPGPFPLTFFHLGKFFRVPVRMFLLEG 121 Query: 498 QGDGTVPAQSREVSYRDDYFDMPADSPAHQLPAGSGFAGFRFQESRLADQKEKDWHTNDW 557 GD T P Q+RE+ YRDDYFDMPADSPAH LP GSGFAGFRFQESRL DQ+ KDW NDW Sbjct: 122 AGDATAPTQARELRYRDDYFDMPADSPAHALPPGSGFAGFRFQESRLGDQQVKDWRKNDW 181 Query: 558 VAFLGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFEPSAPGSDTVVVYA 617 VAFLGASYFRAIGDLYQYGLSARG+AIDVA A + EEFPDFTQFFFEP APGSDTVVVYA Sbjct: 182 VAFLGASYFRAIGDLYQYGLSARGVAIDVAVAGKSEEFPDFTQFFFEPGAPGSDTVVVYA 241 Query: 618 LLDGPSITGAYRFAMQRKQGGGVHMEIDKSLFLRRDVARLGLAPATSMYWFSETVKGTGA 677 LLDGPSITGAYRFAMQR G GV MEIDK LFLRRDV RLGLAPATSMYW+SETVKGTG Sbjct: 242 LLDGPSITGAYRFAMQR--GQGVTMEIDKQLFLRRDVERLGLAPATSMYWYSETVKGTGV 299 Query: 678 DWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQHLRGFGLLQRDRDFDHYLDG 737 DWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRT++S+F+D+ RGFGL+QRDRDFDHYLDG Sbjct: 300 DWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTIASSFADRQPRGFGLMQRDRDFDHYLDG 359 Query: 738 VHYERRPSLWVEPVGDWGEGEVQLIELRTDDEIHDNIVAMWVPKAKAAAGNAYRLRYRLY 797 VHYERRPSLWVEP+GDWGEG+VQLIELRTDDEIHDNIVAMWVPKA A AG+ Y+LRYRL+ Sbjct: 360 VHYERRPSLWVEPLGDWGEGQVQLIELRTDDEIHDNIVAMWVPKAAARAGDRYQLRYRLH 419 Query: 798 WQQDEPFPSPLARCVAT----------------RKFMVEFKGEALAGLPFGVKPEAVITA 841 WQ + PFPS LARCVAT RKFMVEFKG L LPFGVKPEAVI+A Sbjct: 420 WQSETPFPSALARCVATRLGRGGQPGQPRPPQVRKFMVEFKGPPLQALPFGVKPEAVISA 479 Query: 842 SRGSISYVYTEALPNGVPGHWRAQFDLTASGEEPVELRLFLRHQGQALSETWLFQYHPFA 901 SRGSISYVYTEALPNGVPGHWRAQFDLTA GEEPVELRLFLRHQGQALSETWLFQYHPF Sbjct: 480 SRGSISYVYTEALPNGVPGHWRAQFDLTAEGEEPVELRLFLRHQGQALSETWLFQYHPFI 539 Query: 902 AREVY 906 AREVY Sbjct: 540 AREVY 544 >ref|ZP_00945394.1| Periplasmic glucans biosynthesis protein mdoG precursor [Ralstonia solanacearum UW551] gb|EAP72146.1| Periplasmic glucans biosynthesis protein mdoG precursor [Ralstonia solanacearum UW551] Length = 551 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 371/544 (68%), Positives = 430/544 (79%), Gaps = 26/544 (4%) Query: 376 TGEHRMPSRRQFLAAASTASALAALGLSPRALAAQGLRLGRAQPFSFDSLIARARDMART 435 T + M +RR LA+AS ++ LAALG++P ALAA ++LG A PFSFD+L+ RAR MA Sbjct: 10 TSQAPMVTRRHLLASASLSATLAALGITPEALAASRVKLGNAAPFSFDALVERARAMAGQ 69 Query: 436 PYQAPPAVPADVLDKIDYEAHGKIRFKTADALFAQGPGAFPVTFFHLGKFFRVPVRMFIL 495 PY P PAD+L KIDYEAHGKIRF TA ALFA GPG FPVTFFHLG FFR PVRM ++ Sbjct: 70 PYTPPATAPADILAKIDYEAHGKIRFDTAHALFADGPGQFPVTFFHLGTFFRAPVRMHVV 129 Query: 496 AGQGDGTVPAQSREVSYRDDYFDMPADSPAHQLPAGSGFAGFRFQESRLADQKEKDWHTN 555 ++RE+ Y + YFDMPADSPA +LP SGFAGFRFQESRL DQK+ DW N Sbjct: 130 D-------KGEAREIVYDESYFDMPADSPARKLPRNSGFAGFRFQESRLGDQKKLDWKKN 182 Query: 556 DWVAFLGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFE-PSAPGSDTVV 614 DWVAFLGASYFRAIG+LYQYGLSARGIA+DVAQA + EEFP+FT +F+ P+ +D+V Sbjct: 183 DWVAFLGASYFRAIGELYQYGLSARGIALDVAQAGKAEEFPNFTHVWFDTPANEHADSVT 242 Query: 615 VYALLDGPSITGAYRFAMQRKQGGGVHMEIDKSLFLRRDVARLGLAPATSMYWFSETVKG 674 +YALLDGP ITGAYRF M R G GV MEID +LFLRRD+ R G+APA+SMYWFSET KG Sbjct: 243 IYALLDGPGITGAYRFVMHR--GKGVVMEIDTALFLRRDIERFGIAPASSMYWFSETAKG 300 Query: 675 TGADWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQHLRGFGLLQRDRDFDHY 734 T DWRPEVHDSDGLA+W G GE +WRPLN+PPR M+SAFSD + RGFGLLQRDRDF++Y Sbjct: 301 TATDWRPEVHDSDGLAMWTGNGERIWRPLNDPPRVMTSAFSDNNPRGFGLLQRDRDFNNY 360 Query: 735 LDGVHYERRPSLWVEPVGDWGEGEVQLIELRTDDEIHDNIVAMWVPKAKAAAGNAYRLRY 794 +DGVHYERRPSLWVEP+ WGEG VQL+E+ TDDEIHDNIVAMWVPKA A AGN YRLRY Sbjct: 361 MDGVHYERRPSLWVEPLEGWGEGAVQLVEIPTDDEIHDNIVAMWVPKAPARAGNQYRLRY 420 Query: 795 RLYWQQDEPFPSPLARCVAT----------------RKFMVEFKGEALAGLPFGVKPEAV 838 RL+W DEP+P+PLARCVAT RKFMVEFKG L LPFGVKPEAV Sbjct: 421 RLHWLADEPYPTPLARCVATRLGNGGQPGQPRPHGVRKFMVEFKGGPLEKLPFGVKPEAV 480 Query: 839 ITASRGSISYVYTEALPNGVPGHWRAQFDLTASGEEPVELRLFLRHQGQALSETWLFQYH 898 +T+SRG+ SYV+TEA+PNGVPGHWRAQFDLT G+EPV++RLFLR G+ LSETWL+QYH Sbjct: 481 LTSSRGTFSYVFTEAVPNGVPGHWRAQFDLTVDGKEPVDMRLFLRVDGKPLSETWLYQYH 540 Query: 899 PFAA 902 PF + Sbjct: 541 PFQS 544 >ref|YP_298866.1| glucan biosynthesis protein D [Ralstonia eutropha JMP134] gb|AAZ64022.1| Twin-arginine translocation pathway signal [Ralstonia eutropha JMP134] Length = 540 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 385/542 (71%), Positives = 437/542 (80%), Gaps = 20/542 (3%) Query: 381 MPSRRQFLAAASTASALAALGLSPRALAAQGLRLGRAQPFSFDSLIARARDMARTPYQAP 440 M +RR L +A+ ++ALAALG+ P ALAA G++LG A+PFSFD+LI AR +A PY AP Sbjct: 1 MMNRRTLLVSATASAALAALGIPPSALAASGIKLGDARPFSFDALIDHARALAGKPYAAP 60 Query: 441 PAVPADVLDKIDYEAHGKIRFKTADALFAQGPGAFPVTFFHLGKFFRVPVRMFILAGQGD 500 PA P ++LD+IDY+AHGKIRF+ +ALFA GPG FPVTFFHLG +FR PVRM ++ D Sbjct: 61 PAPPPEILDRIDYDAHGKIRFRPENALFADGPGQFPVTFFHLGTYFRTPVRMHVIERGKD 120 Query: 501 GTVPAQSREVSYRDDYFDMPADSPAHQLPAGSGFAGFRFQESRLADQKEKDWHTNDWVAF 560 +RE+ Y + YFDMPADSPAH+LP GSGFAGFRFQESRL DQK +DW NDWVAF Sbjct: 121 SK--GNAREIVYEESYFDMPADSPAHKLPRGSGFAGFRFQESRLGDQKVRDWKKNDWVAF 178 Query: 561 LGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFEPSAPGSDTVVVYALLD 620 LGASYFRAIG+LYQYGLSARGIAIDVA+A + EEFP+FT F+FEP DTV VYALLD Sbjct: 179 LGASYFRAIGELYQYGLSARGIAIDVAEAGKSEEFPNFTHFYFEPPEGKGDTVTVYALLD 238 Query: 621 GPSITGAYRFAMQRKQGGGVHMEIDKSLFLRRDVARLGLAPATSMYWFSETVKGTGADWR 680 GPSITGAY+F MQR G V M++D +LFLR+DVARLGLAP TSMYWFSET+KGT DWR Sbjct: 239 GPSITGAYKFVMQR--GKAVVMDVDCALFLRKDVARLGLAPLTSMYWFSETMKGTAVDWR 296 Query: 681 PEVHDSDGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQHLRGFGLLQRDRDFDHYLDGVHY 740 PEVHDSDGLAIWNGAGEH+WRPLNNPP+TM+SAF D + RGFGLLQRDR FDHY DGV+Y Sbjct: 297 PEVHDSDGLAIWNGAGEHIWRPLNNPPQTMASAFGDDNPRGFGLLQRDRLFDHYQDGVNY 356 Query: 741 ERRPSLWVEPVGDWGEGEVQLIELRTDDEIHDNIVAMWVPKAKAAAGNAYRLRYRLYWQQ 800 ERRPSLWVEP WG G VQL+ELRTDDEIHDNIVAMWVPKA A AGN YRLRYRL+W Sbjct: 357 ERRPSLWVEPRDGWGAGAVQLVELRTDDEIHDNIVAMWVPKAPARAGNTYRLRYRLHWLA 416 Query: 801 DEPFPSPLARCVAT----------------RKFMVEFKGEALAGLPFGVKPEAVITASRG 844 DEPFPSPLARCVAT RKFMVEFKG L LPFGVKPEAV+TASRG Sbjct: 417 DEPFPSPLARCVATRMGNGGQPGQPRPKGERKFMVEFKGAPLEKLPFGVKPEAVLTASRG 476 Query: 845 SISYVYTEALPNGVPGHWRAQFDLTASGEEPVELRLFLRHQGQALSETWLFQYHPFAARE 904 SYV+TEA+PNGVPGHWRAQFDLTA G+EPV+LRLFLR G+ LSETWL+QYHPF ++ Sbjct: 477 KFSYVFTEAVPNGVPGHWRAQFDLTADGKEPVDLRLFLRLDGKPLSETWLYQYHPFQSQT 536 Query: 905 VY 906 Y Sbjct: 537 AY 538 >ref|YP_002257221.1| periplasmic glucans biosynthesis protein [Ralstonia solanacearum IPO1609] emb|CAQ18023.1| periplasmic glucans biosynthesis protein [Ralstonia solanacearum MolK2] emb|CAQ59102.1| periplasmic glucans biosynthesis protein [Ralstonia solanacearum IPO1609] Length = 537 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 370/539 (68%), Positives = 428/539 (79%), Gaps = 26/539 (4%) Query: 381 MPSRRQFLAAASTASALAALGLSPRALAAQGLRLGRAQPFSFDSLIARARDMARTPYQAP 440 M +RR LA+AS ++ LAALG++P ALAA ++LG A PFSFD+L+ RAR MA PY P Sbjct: 1 MVTRRHLLASASLSATLAALGITPEALAASRVKLGNAAPFSFDALVERARAMAGQPYTPP 60 Query: 441 PAVPADVLDKIDYEAHGKIRFKTADALFAQGPGAFPVTFFHLGKFFRVPVRMFILAGQGD 500 PAD+L KIDYEAHGKIRF TA ALFA GPG FPVTFFHLG FFR PVRM ++ Sbjct: 61 ATAPADILAKIDYEAHGKIRFDTAHALFADGPGQFPVTFFHLGTFFRAPVRMHVVD---- 116 Query: 501 GTVPAQSREVSYRDDYFDMPADSPAHQLPAGSGFAGFRFQESRLADQKEKDWHTNDWVAF 560 ++RE+ Y + YFDMPADSPA +LP SGFAGFRFQESRL DQK+ DW NDWVAF Sbjct: 117 ---KGEAREIVYDESYFDMPADSPARKLPRNSGFAGFRFQESRLGDQKKLDWKKNDWVAF 173 Query: 561 LGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFE-PSAPGSDTVVVYALL 619 LGASYFRAIG+LYQYGLSARGIA+DVAQA + EEFP+FT +F+ P+ +D+V +YALL Sbjct: 174 LGASYFRAIGELYQYGLSARGIALDVAQAGKAEEFPNFTHVWFDTPANEHADSVTIYALL 233 Query: 620 DGPSITGAYRFAMQRKQGGGVHMEIDKSLFLRRDVARLGLAPATSMYWFSETVKGTGADW 679 DGP ITGAYRF M R G GV MEID +LFLRRD+ R G+APA+SMYWFSET KGT DW Sbjct: 234 DGPGITGAYRFVMHR--GKGVVMEIDTALFLRRDIERFGIAPASSMYWFSETAKGTATDW 291 Query: 680 RPEVHDSDGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQHLRGFGLLQRDRDFDHYLDGVH 739 RPEVHDSDGLA+W G GE +WRPLN+PPR M+SAFSD + RGFGLLQRDRDF++Y+DGVH Sbjct: 292 RPEVHDSDGLAMWTGNGERIWRPLNDPPRVMTSAFSDNNPRGFGLLQRDRDFNNYMDGVH 351 Query: 740 YERRPSLWVEPVGDWGEGEVQLIELRTDDEIHDNIVAMWVPKAKAAAGNAYRLRYRLYWQ 799 YERRPSLWVEP+ WGEG VQL+E+ TDDEIHDNIVAMWVPKA A AGN YRLRYRL+W Sbjct: 352 YERRPSLWVEPLEGWGEGAVQLVEIPTDDEIHDNIVAMWVPKAPARAGNQYRLRYRLHWL 411 Query: 800 QDEPFPSPLARCVAT----------------RKFMVEFKGEALAGLPFGVKPEAVITASR 843 DEP+P+PLARCVAT RKFMVEFKG L LPFGVKPEAV+T+SR Sbjct: 412 ADEPYPTPLARCVATRLGNGGQPGQPRPHGVRKFMVEFKGGPLEKLPFGVKPEAVLTSSR 471 Query: 844 GSISYVYTEALPNGVPGHWRAQFDLTASGEEPVELRLFLRHQGQALSETWLFQYHPFAA 902 G+ SYV+TEA+PNGVPGHWRAQFDLT G+EPV++RLFLR G+ LSETWL+QYHPF + Sbjct: 472 GTFSYVFTEAVPNGVPGHWRAQFDLTVDGKEPVDMRLFLRVDGKPLSETWLYQYHPFQS 530 >ref|NP_521823.1| glucan biosynthesis protein D [Ralstonia solanacearum GMI1000] emb|CAD17413.1| probable periplasmic glucans biosynthesis transmembrane protein [Ralstonia solanacearum GMI1000] Length = 551 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 370/544 (68%), Positives = 431/544 (79%), Gaps = 26/544 (4%) Query: 376 TGEHRMPSRRQFLAAASTASALAALGLSPRALAAQGLRLGRAQPFSFDSLIARARDMART 435 T + M +RR LA+AS ++ LAALG++P ALAA ++LG A PF+FD+LI RAR MA Sbjct: 10 TSQAPMVTRRHLLASASLSATLAALGITPEALAASRVKLGNAAPFNFDALIERARAMAGQ 69 Query: 436 PYQAPPAVPADVLDKIDYEAHGKIRFKTADALFAQGPGAFPVTFFHLGKFFRVPVRMFIL 495 PY P PAD+L KIDYEAHGKI+F TA ALFA GPG FPVTFFHLG FFR PVRM ++ Sbjct: 70 PYTPPATAPADILAKIDYEAHGKIKFDTAHALFADGPGQFPVTFFHLGTFFRAPVRMHVV 129 Query: 496 AGQGDGTVPAQSREVSYRDDYFDMPADSPAHQLPAGSGFAGFRFQESRLADQKEKDWHTN 555 ++RE+ Y + YFDMPADSPA +LP SGFAGFRFQESRL DQK+ DW N Sbjct: 130 D-------KGEAREIVYDESYFDMPADSPARKLPRNSGFAGFRFQESRLGDQKKLDWKKN 182 Query: 556 DWVAFLGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFE-PSAPGSDTVV 614 DWVAFLGASYFRAIG+LYQYGLSARGIA+DVAQA R EEFP+FT +F+ PS +D+V Sbjct: 183 DWVAFLGASYFRAIGELYQYGLSARGIALDVAQAGRAEEFPNFTHVWFDTPSNEHADSVT 242 Query: 615 VYALLDGPSITGAYRFAMQRKQGGGVHMEIDKSLFLRRDVARLGLAPATSMYWFSETVKG 674 +YALLDGP ITGAYRF M R G GV MEID +LFLRRD+ R G+APA+SMYWFSET KG Sbjct: 243 IYALLDGPGITGAYRFVMHR--GKGVVMEIDTALFLRRDIDRFGIAPASSMYWFSETAKG 300 Query: 675 TGADWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQHLRGFGLLQRDRDFDHY 734 T DWRPEVHDSDGLA+W G+GE +WRPLN+PPR M+SAFSD + RGFGLLQRDRDF++Y Sbjct: 301 TATDWRPEVHDSDGLAMWTGSGERIWRPLNDPPRVMTSAFSDNNPRGFGLLQRDRDFNNY 360 Query: 735 LDGVHYERRPSLWVEPVGDWGEGEVQLIELRTDDEIHDNIVAMWVPKAKAAAGNAYRLRY 794 +DGVHYERRPSLWVEP+ WGEG VQL+E+ TDDEIHDNIVAMWVPKA A AG+ YRLRY Sbjct: 361 MDGVHYERRPSLWVEPLEGWGEGAVQLVEIPTDDEIHDNIVAMWVPKAPARAGSHYRLRY 420 Query: 795 RLYWQQDEPFPSPLARCVAT----------------RKFMVEFKGEALAGLPFGVKPEAV 838 RL+W DEP+P+PLARCVAT RKFMVEFKG L +PFGVKPEAV Sbjct: 421 RLHWLADEPYPTPLARCVATRLGNGGQPGQPRPRGVRKFMVEFKGGPLEKVPFGVKPEAV 480 Query: 839 ITASRGSISYVYTEALPNGVPGHWRAQFDLTASGEEPVELRLFLRHQGQALSETWLFQYH 898 +T+SRG+ SYV+TEA+PNGVPGHWRAQFDLT G+EPV++RLFLR G+ LSETWL+QYH Sbjct: 481 LTSSRGTFSYVFTEAVPNGVPGHWRAQFDLTVDGKEPVDMRLFLRLDGKPLSETWLYQYH 540 Query: 899 PFAA 902 PF + Sbjct: 541 PFQS 544