BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5086.p (410 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777310.1| transport protein [Herbaspirillum seropedica... 526 e-147 ref|YP_002980794.1| hypothetical protein Rpic12D_0821 [Ralstonia... 342 1e-91 ref|ZP_07675678.1| major facilitator superfamily transporter pro... 340 2e-91 emb|CAQ57111.1| major facilitator transporter protein [Ralstonia... 340 4e-91 ref|YP_004751158.1| hypothetical protein CFU_0498 [Collimonas fu... 339 7e-91 >ref|YP_003777310.1| transport protein [Herbaspirillum seropedicae SmR1] gb|ADJ65402.1| transport protein [Herbaspirillum seropedicae SmR1] Length = 412 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 312/390 (80%), Positives = 338/390 (86%), Gaps = 2/390 (0%) Query: 14 KTALRIALSGLVALSVAMGIGRFAFTPLLPMMLHEGSLSLQMGGWLATANYLGYFAGAML 73 + + ++ L+G+VALSVAMGIGRFAFTPLLP+MLHEGSL+LQMGGWLATANYLGYF GAM Sbjct: 21 RLSWKVCLAGMVALSVAMGIGRFAFTPLLPLMLHEGSLNLQMGGWLATANYLGYFVGAMA 80 Query: 74 CAFHRSKRGVAMLRAGLVVTILLTLGMGVLHQDWIWLWMRFLSGVASAYVFVYTAGWCLQ 133 CA HRSKRGV MLR GLV TILLTLGMG+L +W+WL MRFLSGVASAYVFVYTAGWCL Sbjct: 81 CAVHRSKRGVRMLRIGLVATILLTLGMGLLQWNWLWLLMRFLSGVASAYVFVYTAGWCLH 140 Query: 134 QLTQLGRPELGGVIFCGPGLGIALTGLLSGPMIAAGWLAAGGWILFGVIALGLTALVWKS 193 QLTQL RPELGGVIFCGPGLGIALTGLL+GPMI+AGW+AAGGWI +G+IALGLTALVW++ Sbjct: 141 QLTQLQRPELGGVIFCGPGLGIALTGLLTGPMISAGWVAAGGWIAYGIIALGLTALVWQT 200 Query: 194 FSFDAGRGLNVHPHDSNAAQAPVPESASRKREVMIQVIAYGIAGFGYIITATFLPVIARQ 253 F FDAG+G + A ES +KREV +QVIAYGIAGFGYIITATFLPVIARQ Sbjct: 201 FRFDAGQGQASAA--TTTTDASAQESPRQKREVTVQVIAYGIAGFGYIITATFLPVIARQ 258 Query: 254 ALPGSVWPDYFWPIFGLSVAAGAFSATRLSVQGDQRLLLTGAYLMQAAGVLVSILFPTAP 313 ALPGS WPDYFWPIFGLSVAAGAFSATR SV DQRLLLT AYLMQAAGVL+SILFP A Sbjct: 259 ALPGSAWPDYFWPIFGLSVAAGAFSATRFSVHTDQRLLLTAAYLMQAAGVLLSILFPNAW 318 Query: 314 GFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLATKLVHV 373 GFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLAT LVH Sbjct: 319 GFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLATSLVHA 378 Query: 374 SGSFTPSLSIAAATLLAGAGVYGWLATRDR 403 SGSFTPSL +AA TL+ GA +Y L R Sbjct: 379 SGSFTPSLCVAAITLIIGAALYYRLTRTHR 408 >ref|YP_002980794.1| hypothetical protein Rpic12D_0821 [Ralstonia pickettii 12D] gb|ACS62122.1| protein of unknown function DUF1228 [Ralstonia pickettii 12D] Length = 404 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 225/388 (57%), Positives = 270/388 (69%), Gaps = 11/388 (2%) Query: 10 QANRKTALRIALSGLVALSVAMGIGRFAFTPLLPMMLHEGSLSLQMGGWLATANYLGYFA 69 + R TA R+A++G+VALSVAMGIGRFAFTP+LPMMLH+GSL+L G WLAT NYLGYF Sbjct: 15 HSQRATAWRVAIAGMVALSVAMGIGRFAFTPILPMMLHDGSLTLAQGSWLATGNYLGYFV 74 Query: 70 GAMLCAFHRSKRGVAMLRAGLVVTILLTLGMGVLHQDWIWLWMRFLSGVASAYVFVYTAG 129 GA+ C R ++R GLV T+LLT GMGVL WL +RF +G+ASA VFV+TAG Sbjct: 75 GALACMAVRGD-AARLIRIGLVATVLLTAGMGVLQGQPAWLLLRFAAGMASALVFVFTAG 133 Query: 130 WCLQQLTQLGRPELGGVIFCGPGLGIALTGLLSGPMIAAGWLAAGGWILFGVIALGLTAL 189 WCL +LT+LG LGG+IFCGPGLGIA+ GL + M+A GW A WI FGV++ L+A Sbjct: 134 WCLHRLTELGHAALGGIIFCGPGLGIAIPGLAASGMVALGWHATSAWIAFGVLSALLSAA 193 Query: 190 VWKSFSFDAGRGLNVHPHDSNAAQA-PVPESASRKREVMIQVIAYGIAGFGYIITATFLP 248 VW + +A P S A P SA IAYG+AGFGYIITATFLP Sbjct: 194 VWSTIRPEAPAHAAPAPAASGKAPGLDAPTSA--------LTIAYGLAGFGYIITATFLP 245 Query: 249 VIARQALP-GSVWPDYFWPIFGLSVAAGAFSATRLSVQGDQRLLLTGAYLMQAAGVLVSI 307 VIAR+ LP GS+WPD FWP+FG VA GAF +TR+S+ D R LL AY MQA V +SI Sbjct: 246 VIARKVLPAGSLWPDLFWPMFGAGVALGAFLSTRISLARDNRSLLATAYGMQAVAVTISI 305 Query: 308 LFPTAPGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLA 367 ++PT G ALS LLGLPFTAITLF MREARRL A LM LMTAAYGIGQIAGPPLA Sbjct: 306 VWPTVAGLALSSTLLGLPFTAITLFAMREARRLWPHAAPRLMGLMTAAYGIGQIAGPPLA 365 Query: 368 TKLVHVSGSFTPSLSIAAATLLAGAGVY 395 +L +G F SL++AA +L+AG ++ Sbjct: 366 NRLFAATGGFNASLAVAAVSLVAGVVIF 393 >ref|ZP_07675678.1| major facilitator superfamily transporter protein [Ralstonia sp. 5_7_47FAA] gb|EFP65900.1| major facilitator superfamily transporter protein [Ralstonia sp. 5_7_47FAA] Length = 404 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 224/388 (57%), Positives = 270/388 (69%), Gaps = 11/388 (2%) Query: 10 QANRKTALRIALSGLVALSVAMGIGRFAFTPLLPMMLHEGSLSLQMGGWLATANYLGYFA 69 + R +A R+A++G+VALSVAMGIGRFAFTP+LPMMLH+GSL+L G WLAT NYLGYF Sbjct: 15 HSQRASAWRVAIAGMVALSVAMGIGRFAFTPILPMMLHDGSLTLAQGSWLATGNYLGYFV 74 Query: 70 GAMLCAFHRSKRGVAMLRAGLVVTILLTLGMGVLHQDWIWLWMRFLSGVASAYVFVYTAG 129 GA+ C R ++R GLV T+LLT GMGVL WL +RF +G+ASA VFV+TAG Sbjct: 75 GALACMAVRGD-AARLIRIGLVATVLLTAGMGVLQGQPAWLVLRFAAGMASALVFVFTAG 133 Query: 130 WCLQQLTQLGRPELGGVIFCGPGLGIALTGLLSGPMIAAGWLAAGGWILFGVIALGLTAL 189 WCL +LT+LG LGG+IFCGPGLGIA+ GL + M+A GW A WI FGV++ L+A Sbjct: 134 WCLHRLTELGHAALGGIIFCGPGLGIAIPGLAASGMVALGWHATSAWIAFGVLSALLSAA 193 Query: 190 VWKSFSFDAGRGLNVHPHDSNAAQA-PVPESASRKREVMIQVIAYGIAGFGYIITATFLP 248 VW + +A P S A P SA IAYG+AGFGYIITATFLP Sbjct: 194 VWSTIRPEAPAHAAPAPAASGKAPGLDAPTSA--------LTIAYGLAGFGYIITATFLP 245 Query: 249 VIARQALP-GSVWPDYFWPIFGLSVAAGAFSATRLSVQGDQRLLLTGAYLMQAAGVLVSI 307 VIAR+ LP GS+WPD FWP+FG VA GAF +TR+S+ D R LL AY MQA V +SI Sbjct: 246 VIARKVLPAGSLWPDLFWPMFGAGVALGAFLSTRISLARDNRSLLATAYGMQAVAVTISI 305 Query: 308 LFPTAPGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLA 367 ++PT G ALS LLGLPFTAITLF MREARRL A LM LMTAAYGIGQIAGPPLA Sbjct: 306 VWPTVAGLALSSTLLGLPFTAITLFAMREARRLWPHAAPRLMGLMTAAYGIGQIAGPPLA 365 Query: 368 TKLVHVSGSFTPSLSIAAATLLAGAGVY 395 +L +G F SL++AA +L+AG ++ Sbjct: 366 NRLFAATGGFNASLAVAAVSLVAGVVIF 393 >emb|CAQ57111.1| major facilitator transporter protein [Ralstonia solanacearum MolK2] Length = 418 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 224/386 (58%), Positives = 272/386 (70%), Gaps = 12/386 (3%) Query: 13 RKTALRIALSGLVALSVAMGIGRFAFTPLLPMMLHEGSLSLQMGGWLATANYLGYFAGAM 72 R +A R+A++G++ALSVAMGIGRFAFTP+LPMMLH+GS++L G WLAT NYLGYF GA+ Sbjct: 31 RASAWRVAIAGMIALSVAMGIGRFAFTPILPMMLHDGSITLAQGSWLATGNYLGYFVGAL 90 Query: 73 LCAFHRSKRGVAMLRAGLVVTILLTLGMGVLHQDWIWLWMRFLSGVASAYVFVYTAGWCL 132 C R + R GLV T+LLT GMGVL WL +RF++G+ASA VFV+TAGWCL Sbjct: 91 ACMAVRGD-AARLTRIGLVATVLLTAGMGVLQGQPAWLALRFVAGMASALVFVFTAGWCL 149 Query: 133 QQLTQLGRPELGGVIFCGPGLGIALTGLLSGPMIAAGWLAAGGWILFGVIALGLTALVWK 192 +LT+LG LGG+IFCGPGLGI L GL++ M+A GW A WI FGV+ L+A VW Sbjct: 150 HRLTELGHARLGGIIFCGPGLGITLPGLIASGMVALGWHAQSAWIAFGVLCAVLSAAVWS 209 Query: 193 SFSFDAGRGLNVHPHDSNAAQAPVPESASRKREVMIQVI--AYGIAGFGYIITATFLPVI 250 + + PH AA AP A+ + +V I AYG+AGFGYIITATFLPVI Sbjct: 210 TIRPER------QPH--AAALAPGASGAAPRLDVPTVAITLAYGLAGFGYIITATFLPVI 261 Query: 251 ARQALP-GSVWPDYFWPIFGLSVAAGAFSATRLSVQGDQRLLLTGAYLMQAAGVLVSILF 309 AR+ LP GS+WPD FWP+FG+ VA GAF +TR+S+ D R+LL AY MQA V SI + Sbjct: 262 ARRVLPAGSIWPDLFWPLFGVGVALGAFLSTRISLAHDNRVLLAVAYAMQAVAVAASIAW 321 Query: 310 PTAPGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLATK 369 PT G ALS LLLGLPFTAITLF MREARRL LM LMTAAYGIGQIAGPPLA + Sbjct: 322 PTVGGLALSSLLLGLPFTAITLFAMREARRLWPHAVPRLMGLMTAAYGIGQIAGPPLANR 381 Query: 370 LVHVSGSFTPSLSIAAATLLAGAGVY 395 L +G F SL++AAATL+ G ++ Sbjct: 382 LFAATGGFNASLAVAAATLVLGMAMF 407 >ref|YP_004751158.1| hypothetical protein CFU_0498 [Collimonas fungivorans Ter331] gb|AEK60335.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 402 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 217/374 (58%), Positives = 267/374 (71%), Gaps = 7/374 (1%) Query: 4 QHTQDTQANRKTALRIALSGLVALSVAMGIGRFAFTPLLPMMLHEGSLSLQMGGWLATAN 63 Q T + A R+AL+G +AL+VAMGIGRFAFTPLLPMMLH+G++ L GGWLATAN Sbjct: 6 QATALETGQGRAAWRVALAGALALAVAMGIGRFAFTPLLPMMLHDGAIDLAAGGWLATAN 65 Query: 64 YLGYFAGAMLCAFHRSKRGVAMLRAGLVVTILLTLGMGVLHQDWIWLWMRFLSGVASAYV 123 Y+GY GA+LC R+ A ++ GLV T+LLTLGMG LH +WL +R L+GV+SA Sbjct: 66 YIGYLIGALLCMVLRTDATRA-IKLGLVSTVLLTLGMGWLHSPALWLLLRTLAGVSSACT 124 Query: 124 FVYTAGWCLQQLTQLGRPELGGVIFCGPGLGIALTGLLSGPMIAAGWLAAGGWILFGVIA 183 FV+ +GWCLQ+L QL P LGG+I+CGPGLGI +TGL + MI W A GW+L+G++A Sbjct: 125 FVFASGWCLQRLAQLQAPALGGIIYCGPGLGILITGLATSAMIGQHWRAEHGWLLYGLLA 184 Query: 184 LGLTALVWKSFSFDAGRGLNVHPHDSNAAQAPVPESASRKREVMIQVIAYGIAGFGYIIT 243 L LTALVW +FS A P AA P A+R+ + IAY +AGFGYIIT Sbjct: 185 LILTALVWSTFSGSAAAAGTPSP----AAHGLEPAQAARQTRGL--TIAYALAGFGYIIT 238 Query: 244 ATFLPVIARQALPGSVWPDYFWPIFGLSVAAGAFSATRLSVQGDQRLLLTGAYLMQAAGV 303 ATFLPVIARQALPGS WPD FWP+FG+ V+ GA ATRL D RLLL YL+QA G+ Sbjct: 239 ATFLPVIARQALPGSNWPDLFWPLFGICVSIGALLATRLPTHWDNRLLLAACYLLQAGGI 298 Query: 304 LVSILFPTAPGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAG 363 +V ++ P+ GFAL +LLGLPFTAITLF MR+ARRLR + A SLM L+TA YG+GQI G Sbjct: 299 IVGLVSPSVAGFALGSILLGLPFTAITLFAMRDARRLRGDHARSLMGLLTATYGVGQIIG 358 Query: 364 PPLATKLVHVSGSF 377 PPLAT+LV SG+F Sbjct: 359 PPLATRLVQGSGNF 372