BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5085.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777309.1| LysR family transcription regulator [Herbasp... 439 e-121 ref|YP_004751160.1| LysR family transcriptional regulator [Colli... 313 2e-83 ref|YP_001857840.1| LysR family transcriptional regulator [Burkh... 265 9e-69 ref|YP_773182.1| LysR family transcriptional regulator [Burkhold... 263 2e-68 ref|ZP_04886666.1| transcriptional regulator, LysR family [Burkh... 257 2e-66 >ref|YP_003777309.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ65401.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 296 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 242/287 (84%), Positives = 267/287 (93%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFVRDRKRLVLTAS 60 ME+A LEIFR VV+EGG+TRAAERL+RVQSNVTTRI+QLE+S+GVPLFVRDR+R+VLTA+ Sbjct: 10 MELAELEIFRTVVAEGGVTRAAERLNRVQSNVTTRIKQLEQSMGVPLFVRDRRRMVLTAA 69 Query: 61 GEALLDYAERILDLVQEAREVVSPQNPRGRLRIGSMESAAASRLPAPLAEFHQRWPEVRL 120 GEALLDYAERILDL QEAR+ V+PQ+PRGRLRIGSMESAAASRLP PLAEFHQRWPEVRL Sbjct: 70 GEALLDYAERILDLAQEARQAVAPQSPRGRLRIGSMESAAASRLPGPLAEFHQRWPEVRL 129 Query: 121 ELSTGPTDVLIAGVRAGKLDAALVAGPIEDGALSATPLYKEELLLVTPRSHRRVRSPEDV 180 ELST PTDVL+A VRA KLDAALVAGP+ D A ATPL++EELLLVTPRSHRRVR+PE+V Sbjct: 130 ELSTAPTDVLMAQVRACKLDAALVAGPVSDPAFDATPLFREELLLVTPRSHRRVRAPEEV 189 Query: 181 MLDTLIVFEQGCAYRRHAESWFAGQGKGGVPVRTLELASYHAILACVAAGAGVAVVPRSV 240 MLDTLIVFEQGCAYRRHAE+WFAG G G RTLELASYHAILACV+AGAGVAVVPRSV Sbjct: 190 MLDTLIVFEQGCAYRRHAEAWFAGHGAGRQLPRTLELASYHAILACVSAGAGVAVVPRSV 249 Query: 241 IAMQMEPHGFATHSLGRDGRVTTFLISRRERSSASLLALRSLLVASL 287 IAMQMEPHGFATHSLGRDGR+TTFLISRRER SAS LALR+LL+AS+ Sbjct: 250 IAMQMEPHGFATHSLGRDGRITTFLISRRERYSASFLALRALLMASV 296 >ref|YP_004751160.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60337.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 291 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 176/286 (61%), Positives = 209/286 (73%), Gaps = 1/286 (0%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFVRDRKRLVLTAS 60 M++ +LEIFR VV EGGITRAAE+LHRVQSNVTTRIRQLE S+GV LF R+ KRLVLT + Sbjct: 1 MDLLSLEIFRTVVREGGITRAAEQLHRVQSNVTTRIRQLETSLGVSLFSRNNKRLVLTPA 60 Query: 61 GEALLDYAERILDLVQEAREVVSPQNPRGRLRIGSMESAAASRLPAPLAEFHQRWPEVRL 120 GE LL YAER+L+L EARE V P P+GRLRIGSMES AASRLP PLA FHQ WP V+L Sbjct: 61 GETLLGYAERLLNLAGEAREAVQPAVPQGRLRIGSMESTAASRLPLPLARFHQEWPAVQL 120 Query: 121 ELSTGPTDVLIAGVRAGKLDAALVAGPIEDGALSATPLYKEELLLVTPRSHRRVRSPEDV 180 ELSTG T LI VRA LDAALVAGP++D PLY EEL+++ R+H + P+DV Sbjct: 121 ELSTGATQQLIDRVRAFTLDAALVAGPLDDPLFEMLPLYAEELVVLAARNHPPISGPDDV 180 Query: 181 MLDTLIVFEQGCAYRRHAESWFA-GQGKGGVPVRTLELASYHAILACVAAGAGVAVVPRS 239 TL+ FE GCAYRRHAE+W A G G P R LEL SYHA+LACVAAGAG+A+ PRS Sbjct: 181 QSRTLVAFEHGCAYRRHAENWLASGSVPGRRPDRILELGSYHAMLACVAAGAGIALAPRS 240 Query: 240 VIAMQMEPHGFATHSLGRDGRVTTFLISRRERSSASLLALRSLLVA 285 V+ + AT+ +G G+VTT+LI R + SS + AL +L A Sbjct: 241 VLELHNNTQSLATYPIGPAGQVTTYLIRRHDYSSPAFDALSQILQA 286 >ref|YP_001857840.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC70794.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 301 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 166/290 (57%), Positives = 203/290 (70%), Gaps = 6/290 (2%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFVRDRKRLVLTAS 60 M++AAL IFRAVV E G+TRAA +L+RVQSNVTTRIRQLEE +G LF RD +RLVLT + Sbjct: 1 MDLAALTIFRAVVRENGVTRAAAKLNRVQSNVTTRIRQLEEQLGTELFTRDGRRLVLTPA 60 Query: 61 GEALLDYAERILDLVQEAREVVSPQNPRGRLRIGSMESAAASRLPAPLAEFHQRWPEVRL 120 GE LL YAER+L L EAR V P GRLR+G+MES AA+RLP LA +HQ WPEV L Sbjct: 61 GETLLPYAERLLALADEARHAVKDAQPSGRLRLGTMESVAATRLPGLLAHYHQTWPEVAL 120 Query: 121 ELSTGPTDVLIAGVRAGKLDAALVAGPIEDGAL----SATPLYKEELLLVTPRSHRRVRS 176 EL G TD LI VR ++DAA+VA P++ G + +++EEL+++TPR H VR Sbjct: 121 ELEVGTTDKLIDRVREFEVDAAIVARPLDAGWIGDLFEVEAVFREELVMLTPRGHPPVRE 180 Query: 177 PEDVMLDTLIVFEQGCAYRRHAESWFAGQGKGGVPVRTLELASYHAILACVAAGAGVAVV 236 P D+ L TLI FE GCAYR H E W+ +G P R LEL SYHAI+ACVAAGAGVAV Sbjct: 181 PSDITLSTLIAFETGCAYRVHVEKWY--MDRGLRPARVLELGSYHAIVACVAAGAGVAVA 238 Query: 237 PRSVIAMQMEPHGFATHSLGRDGRVTTFLISRRERSSASLLALRSLLVAS 286 PRSV+A+ E + A H+L G + T LI RR S++L ALR +LVAS Sbjct: 239 PRSVLALLPESNDIAVHALDDLGSIDTLLIWRRGHFSSALNALRGMLVAS 288 >ref|YP_773182.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gb|ABI86848.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 309 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 173/287 (60%), Positives = 202/287 (70%), Gaps = 6/287 (2%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFVRDRKRLVLTAS 60 M++AAL IFRAVV E G+TRAA +L+RVQSNVTTRI+QLEE +G LFVRD +RLVLT + Sbjct: 1 MDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLEEELGAALFVRDGRRLVLTPA 60 Query: 61 GEALLDYAERILDLVQEAREVVSPQNPRGRLRIGSMESAAASRLPAPLAEFHQRWPEVRL 120 GE LL YAER+L L EAR V PRGRLR+G+MES AASRLPA LA +HQ WPEV L Sbjct: 61 GETLLPYAERLLALADEARHAVREDRPRGRLRLGAMESTAASRLPAVLARYHQAWPEVTL 120 Query: 121 ELSTGPTDVLIAGVRAGKLDAALVAGPIEDGAL----SATPLYKEELLLVTPRSHRRVRS 176 EL TG T LI VRA ++DAALVA P AL +++EELLL+TPR H VRS Sbjct: 121 ELVTGTTGWLIDKVRAFEIDAALVARPPAPDALPDMFDTVQVFREELLLLTPRGHPPVRS 180 Query: 177 PEDVMLDTLIVFEQGCAYRRHAESWFAGQGKGGVPVRTLELASYHAILACVAAGAGVAVV 236 P DVML TLI FE+GC YR HAE W+A G P R LEL SYHAI+ACVAAGAGVAV Sbjct: 181 PRDVMLPTLIAFERGCTYRSHAEQWYAAHGVK--PARVLELGSYHAIVACVAAGAGVAVA 238 Query: 237 PRSVIAMQMEPHGFATHSLGRDGRVTTFLISRRERSSASLLALRSLL 283 PRSV+ Q E A H++ + T LI R +SA+L ALR +L Sbjct: 239 PRSVLDRQPEAENLALHAVPAFDAIDTLLIWRHGHASAALGALRDVL 285 >ref|ZP_04886666.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gb|EDU07650.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 341 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 168/287 (58%), Positives = 200/287 (69%), Gaps = 6/287 (2%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFVRDRKRLVLTAS 60 M++AAL IFRAVV E G+TRAA +L+RVQSNVTTRI+QLEE +G PLFVRD +RLVLT + Sbjct: 21 MDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLEEQLGAPLFVRDGRRLVLTPA 80 Query: 61 GEALLDYAERILDLVQEAREVVSPQNPRGRLRIGSMESAAASRLPAPLAEFHQRWPEVRL 120 GE LL YAER+L L EAR V+ P GRLR+G+MES AASRLPA LA +HQ WP+V L Sbjct: 81 GETLLPYAERLLALADEARHAVTENRPHGRLRLGAMESTAASRLPALLARYHQAWPDVTL 140 Query: 121 ELSTGPTDVLIAGVRAGKLDAALVAGPIEDGAL----SATPLYKEELLLVTPRSHRRVRS 176 EL TG T LI VR +LDAALVA P AL + EEL+L+TPR H RVR+ Sbjct: 141 ELVTGTTGKLIGLVRDFELDAALVATPAGSEALGEPFETASAFTEELVLLTPRGHPRVRT 200 Query: 177 PEDVMLDTLIVFEQGCAYRRHAESWFAGQGKGGVPVRTLELASYHAILACVAAGAGVAVV 236 P DV L TL+ FE+GCAYR E W+A +G P R LEL SYHAI+ACVAAGAGVAV Sbjct: 201 PRDVRLPTLVAFERGCAYRGCVERWYAAEGLK--PERVLELGSYHAIVACVAAGAGVAVA 258 Query: 237 PRSVIAMQMEPHGFATHSLGRDGRVTTFLISRRERSSASLLALRSLL 283 PRSV+A+Q EP H + + T L+ R+ SA+L ALR L Sbjct: 259 PRSVLAVQREPDSLGVHPIDGMPPIDTMLVWRQGHFSAALAALRDTL 305