BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5084.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777308.1| LysR family transcription regulator protein ... 510 e-143 ref|YP_001354284.1| LysR family transcriptional regulator [Janth... 459 e-127 ref|YP_001100752.1| LysR family transcriptional regulator [Hermi... 451 e-124 ref|ZP_04589201.1| regulatory protein, LysR substrate-binding pr... 360 2e-97 ref|ZP_06494661.1| regulatory protein, LysR:LysR, substrate-bind... 357 1e-96 >ref|YP_003777308.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65400.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 279/302 (92%), Positives = 292/302 (96%) Query: 1 MAALNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQISLFEESLGYKLFKRVGRRLEL 60 MA LNYKHLHYFWTVAKTGG+ARA ERLHLTAQTISGQ+SLFEESLGY LF+RVGRRLEL Sbjct: 1 MAGLNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQLSLFEESLGYPLFRRVGRRLEL 60 Query: 61 NDEGRMVFDYAERIFSLGEELEEALRLRPGGRTLQLRVGVADAVPKAIAYLLLESALAMQ 120 NDEGRMVFDYAERIFS+GEELEEALRLRPGGR LQLRVGVADAVPKAIAYLLLESALAMQ Sbjct: 61 NDEGRMVFDYAERIFSIGEELEEALRLRPGGRALQLRVGVADAVPKAIAYLLLESALAMQ 120 Query: 121 DPIRIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELA 180 DPIRIICREGKLDVLLADLA+HKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELA Sbjct: 121 DPIRIICREGKLDVLLADLALHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELA 180 Query: 181 RRYRKGFPQSLDAAPFLMPGEDAAVRPRLLRWFEKEGIRPQITGEFDDGALLLAFGDAGA 240 RRYRKGFP S D APFLMPGEDAAVRPRLLRWFEKE IRP+ITGEFDDGALLLAFGDAGA Sbjct: 181 RRYRKGFPGSFDGAPFLMPGEDAAVRPRLLRWFEKEKIRPRITGEFDDGALLLAFGDAGA 240 Query: 241 GIFAAPTAIAGQIRKQYGLVEIGKTDAIREQFYAISVERRLSHPAVLAIQTAARGNLIVG 300 GIFAAP AIA QIRKQYGLVEIG+T+AIREQFYAISV+R+L+HPAVLAIQ+AARGNLIVG Sbjct: 241 GIFAAPAAIAAQIRKQYGLVEIGRTEAIREQFYAISVQRKLTHPAVLAIQSAARGNLIVG 300 Query: 301 ST 302 S+ Sbjct: 301 SS 302 >ref|YP_001354284.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90731.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 299 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 221/298 (74%), Positives = 259/298 (86%) Query: 1 MAALNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQISLFEESLGYKLFKRVGRRLEL 60 M+ +NYKHLHYFW VAK+GGI RA ERLHLT QTISGQIS FE+ LGYKLF RVGRRLEL Sbjct: 1 MSGINYKHLHYFWVVAKSGGIGRASERLHLTPQTISGQISQFEDVLGYKLFNRVGRRLEL 60 Query: 61 NDEGRMVFDYAERIFSLGEELEEALRLRPGGRTLQLRVGVADAVPKAIAYLLLESALAMQ 120 ND GR+V YA+ IF+LGEEL+E LR RPGG LQ RVGVADAVPKAIAYLLLE A+ + Sbjct: 61 NDAGRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELP 120 Query: 121 DPIRIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELA 180 + +RI+CREGKL LLADLA+H+LDI+IADSPMP N+DVRGY+HLLGEC +FFAT LA Sbjct: 121 ESLRIVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGMTFFATDALA 180 Query: 181 RRYRKGFPQSLDAAPFLMPGEDAAVRPRLLRWFEKEGIRPQITGEFDDGALLLAFGDAGA 240 + Y+K FP+SLDAAPFLMPGEDAAVRPRL+RWFEKE +RP+I GEFDDGALL AFG+AG Sbjct: 181 KTYQKDFPKSLDAAPFLMPGEDAAVRPRLIRWFEKEKVRPRIVGEFDDGALLQAFGEAGK 240 Query: 241 GIFAAPTAIAGQIRKQYGLVEIGKTDAIREQFYAISVERRLSHPAVLAIQTAARGNLI 298 GIFAAP+A+A QI+KQYG+ EIG+T+A+ EQFYAISVER+L+HPAV+AI +AAR +LI Sbjct: 241 GIFAAPSAVAEQIKKQYGVTEIGRTNAVSEQFYAISVERQLTHPAVVAISSAARESLI 298 >ref|YP_001100752.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL62631.1| Putative regulatory protein, LysR family [Herminiimonas arsenicoxydans] Length = 296 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 217/295 (73%), Positives = 253/295 (85%) Query: 4 LNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELNDE 63 +NYKHLHYFW VAK GGI RA ERLHLT QTISGQI+LFE+ LGYKLF R+GRRLELND Sbjct: 1 MNYKHLHYFWVVAKAGGIGRASERLHLTPQTISGQITLFEDVLGYKLFNRIGRRLELNDA 60 Query: 64 GRMVFDYAERIFSLGEELEEALRLRPGGRTLQLRVGVADAVPKAIAYLLLESALAMQDPI 123 GR+V YA+ IF+LGEEL+E LR RPGG LQ RVGVADAVPKAIAYLLLE A+ + + + Sbjct: 61 GRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELPESL 120 Query: 124 RIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELARRY 183 R++CREGKL LLADLA+H+LDI+IADSPMP N+DVRGY+HLLGEC +FFAT ELA+ Y Sbjct: 121 RLVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGVTFFATDELAKEY 180 Query: 184 RKGFPQSLDAAPFLMPGEDAAVRPRLLRWFEKEGIRPQITGEFDDGALLLAFGDAGAGIF 243 +GFP+SLD APFLMPGEDAAVRPRL+RWFEKE +RP+I GEFDDGALL AFG AG GIF Sbjct: 181 EEGFPKSLDGAPFLMPGEDAAVRPRLIRWFEKEKVRPRIIGEFDDGALLQAFGGAGKGIF 240 Query: 244 AAPTAIAGQIRKQYGLVEIGKTDAIREQFYAISVERRLSHPAVLAIQTAARGNLI 298 AAP+A+A QI KQYG+ EIG+T + EQFYAISVER+L+HPAV+AI +AAR +LI Sbjct: 241 AAPSAVADQIIKQYGVTEIGRTSLVTEQFYAISVERQLTHPAVVAISSAARESLI 295 >ref|ZP_04589201.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI03655.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 300 Score = 360 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 169/294 (57%), Positives = 220/294 (74%) Query: 4 LNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELNDE 63 LNY+ LHYFW VAKTG I RA E+L+LTAQT+SGQISL E SLG LF+RVGR+LE+ + Sbjct: 2 LNYRQLHYFWVVAKTGSIVRACEQLNLTAQTVSGQISLLEASLGVDLFQRVGRQLEMTEA 61 Query: 64 GRMVFDYAERIFSLGEELEEALRLRPGGRTLQLRVGVADAVPKAIAYLLLESALAMQDPI 123 GR+ YAE++F LG ELE LR +P + L R+GVAD VPK+I Y L+ + +Q+ I Sbjct: 62 GRLALPYAEQMFQLGNELENLLRSQPDEQQLLFRIGVADVVPKSIVYRLISPTMNLQESI 121 Query: 124 RIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELARRY 183 RI CRE KLD LLADLAI +LD++I+DSPMPP++D++GY H LGEC SFFAT E+A R Sbjct: 122 RITCREDKLDRLLADLAIQRLDLVISDSPMPPHLDIKGYSHKLGECGVSFFATREVAERV 181 Query: 184 RKGFPQSLDAAPFLMPGEDAAVRPRLLRWFEKEGIRPQITGEFDDGALLLAFGDAGAGIF 243 FPQ L AP L+PG++ VR RL+RWF ++ I+P+I GEFDD AL+ AFG +G+GIF Sbjct: 182 GDDFPQCLHGAPLLIPGQETVVRGRLMRWFAEQKIQPRIVGEFDDSALMKAFGKSGSGIF 241 Query: 244 AAPTAIAGQIRKQYGLVEIGKTDAIREQFYAISVERRLSHPAVLAIQTAARGNL 297 AP+ IA +++ QY + IG+TDA+ E FYAI+VER++ HP V+AI +AR L Sbjct: 242 VAPSVIAAEVQSQYAVQVIGQTDAVTESFYAITVERKVKHPGVVAIAESARNQL 295 >ref|ZP_06494661.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae FF5] Length = 300 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 167/294 (56%), Positives = 220/294 (74%) Query: 4 LNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELNDE 63 LNY+ LHYFW VAKTG IARA E+L+LTAQT+SGQISL E SLG LF+RVGR+LE+ + Sbjct: 2 LNYRQLHYFWVVAKTGSIARACEQLNLTAQTVSGQISLLEASLGVDLFQRVGRQLEMTEA 61 Query: 64 GRMVFDYAERIFSLGEELEEALRLRPGGRTLQLRVGVADAVPKAIAYLLLESALAMQDPI 123 GR+ YAE++F LG +LE LR +P + L LR+GVAD VPK+I Y L+ + + +PI Sbjct: 62 GRLALPYAEQMFQLGNDLENLLRSQPDEQQLLLRIGVADVVPKSIVYRLIAPTMTLDEPI 121 Query: 124 RIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELARRY 183 RI CRE KL+ LLADLAI +LD++I+DSPMPP++D++GY LGEC SFFAT E+ R Sbjct: 122 RITCREDKLERLLADLAIQRLDLVISDSPMPPHLDIKGYSQKLGECGVSFFATREIVERI 181 Query: 184 RKGFPQSLDAAPFLMPGEDAAVRPRLLRWFEKEGIRPQITGEFDDGALLLAFGDAGAGIF 243 FPQ + AP L+PG++ VR RL+RWF ++GI+P+I GEFDD AL+ AFG +G+G+F Sbjct: 182 GTDFPQCMHGAPLLIPGQETVVRGRLMRWFAEQGIQPRIIGEFDDSALMKAFGKSGSGVF 241 Query: 244 AAPTAIAGQIRKQYGLVEIGKTDAIREQFYAISVERRLSHPAVLAIQTAARGNL 297 AP+ IA ++ QYG+ IG TDA+ E FYAI+VER++ HP V+AI +AR L Sbjct: 242 VAPSVIADEVEDQYGVQVIGHTDAVTESFYAITVERKVKHPGVVAIAESARNQL 295